RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 QTRT2Q9H974 415 aaKnown RBP23.3■■□□□ 1.32
CLSTN3-213ENST00000541953 PXDNQ92626 1479 aa23.3■■□□□ 1.32
CLSTN3-213ENST00000541953 PLEKHH1Q9ULM0 1364 aa23.28■■□□□ 1.32
CLSTN3-213ENST00000541953 EP400Q96L91 3159 aa23.28■■□□□ 1.32
CLSTN3-213ENST00000541953 CCDC144AA2RUR9 1427 aa23.27■■□□□ 1.32
CLSTN3-213ENST00000541953 TECPR2O15040 1411 aa23.27■■□□□ 1.32
CLSTN3-213ENST00000541953 RGL3Q3MIN7 710 aa23.27■■□□□ 1.32
CLSTN3-213ENST00000541953 MYOM2P54296 1465 aa23.27■■□□□ 1.32
CLSTN3-213ENST00000541953 KNDC1Q76NI1 1749 aa23.27■■□□□ 1.32
CLSTN3-213ENST00000541953 RBM6P78332 1123 aaKnown RBP23.26■■□□□ 1.31
CLSTN3-213ENST00000541953 WAPLQ7Z5K2 1190 aa23.26■■□□□ 1.31
CLSTN3-213ENST00000541953 NGLY1Q96IV0 654 aa23.26■■□□□ 1.31
CLSTN3-213ENST00000541953 SRCAPQ6ZRS2 3230 aa23.26■■□□□ 1.31
CLSTN3-213ENST00000541953 XPCQ01831 940 aaPredicted RBP23.25■■□□□ 1.31
CLSTN3-213ENST00000541953 STK26Q9P289 416 aa23.25■■□□□ 1.31
CLSTN3-213ENST00000541953 TMEM132EQ6IEE7 984 aa23.24■■□□□ 1.31
CLSTN3-213ENST00000541953 PIK3C2GO75747 1445 aa23.24■■□□□ 1.31
CLSTN3-213ENST00000541953 FMN2Q9NZ56 1722 aa23.23■■□□□ 1.31
CLSTN3-213ENST00000541953 MARF1Q9Y4F3 1742 aaKnown RBP23.23■■□□□ 1.31
CLSTN3-213ENST00000541953 NUTM2FA1L443 756 aa23.23■■□□□ 1.31
CLSTN3-213ENST00000541953 ESCO1Q5FWF5 840 aa23.22■■□□□ 1.31
CLSTN3-213ENST00000541953 MPHOSPH9Q99550 1183 aa23.22■■□□□ 1.31
CLSTN3-213ENST00000541953 LRPPRCP42704 1394 aaKnown RBP23.22■■□□□ 1.31
CLSTN3-213ENST00000541953 USP21Q9UK80 565 aa23.21■■□□□ 1.31
CLSTN3-213ENST00000541953 ATRNO75882 1429 aa23.2■■□□□ 1.3
CLSTN3-213ENST00000541953 FOXO3O43524 673 aa23.19■■□□□ 1.3
CLSTN3-213ENST00000541953 FNBP4Q8N3X1 1017 aaPredicted RBP23.19■■□□□ 1.3
CLSTN3-213ENST00000541953 BCL9LQ86UU0 1499 aa23.18■■□□□ 1.3
CLSTN3-213ENST00000541953 ANKRD30BQ9BXX2 1392 aa23.18■■□□□ 1.3
CLSTN3-213ENST00000541953 NPHP3Q7Z494 1330 aa23.18■■□□□ 1.3
CLSTN3-213ENST00000541953 YTHDC2Q9H6S0 1430 aaKnown RBP23.17■■□□□ 1.3
CLSTN3-213ENST00000541953 RGPD8O14715 1765 aaPredicted RBP23.17■■□□□ 1.3
CLSTN3-213ENST00000541953 ABCC11Q96J66 1382 aa23.17■■□□□ 1.3
CLSTN3-213ENST00000541953 NRXN1Q9ULB1 1477 aa23.13■■□□□ 1.29
CLSTN3-213ENST00000541953 TRPC5Q9UL62 973 aaPredicted RBP23.13■■□□□ 1.29
CLSTN3-213ENST00000541953 KIF1AQ12756 1690 aa23.13■■□□□ 1.29
CLSTN3-213ENST00000541953 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.11■■□□□ 1.29
CLSTN3-213ENST00000541953 GLI3P10071 1580 aa23.1■■□□□ 1.29
CLSTN3-213ENST00000541953 ATAD2Q6PL18 1390 aa23.09■■□□□ 1.29
CLSTN3-213ENST00000541953 USP32Q8NFA0 1604 aa23.08■■□□□ 1.29
CLSTN3-213ENST00000541953 CFAP70Q5T0N1 1121 aa23.08■■□□□ 1.29
CLSTN3-213ENST00000541953 ABCA3Q99758 1704 aa23.08■■□□□ 1.28
CLSTN3-213ENST00000541953 SPATA31A3Q5VYP0 1347 aa23.08■■□□□ 1.28
CLSTN3-213ENST00000541953 C14orf93Q9H972 538 aaKnown RBP23.07■■□□□ 1.28
CLSTN3-213ENST00000541953 SLIT2O94813 1529 aa23.07■■□□□ 1.28
CLSTN3-213ENST00000541953 SAFB2Q14151 953 aaKnown RBP eCLIP23.04■■□□□ 1.28
CLSTN3-213ENST00000541953 RALGAPBQ86X10 1494 aa23.03■■□□□ 1.28
CLSTN3-213ENST00000541953 BRWD3Q6RI45 1802 aa23.03■■□□□ 1.28
CLSTN3-213ENST00000541953 ADGRB1O14514 1584 aa23.02■■□□□ 1.28
CLSTN3-213ENST00000541953 TNS3Q68CZ2 1445 aa23.02■■□□□ 1.28
CLSTN3-213ENST00000541953 KRT28Q7Z3Y7 464 aa23.02■■□□□ 1.28
CLSTN3-213ENST00000541953 PLCH1Q4KWH8 1693 aa23.02■■□□□ 1.28
CLSTN3-213ENST00000541953 RAB3GAP2Q9H2M9 1393 aa23.01■■□□□ 1.27
CLSTN3-213ENST00000541953 CABLES1Q8TDN4 633 aa23.01■■□□□ 1.27
CLSTN3-213ENST00000541953 GJD4Q96KN9 370 aaPredicted RBP23.01■■□□□ 1.27
CLSTN3-213ENST00000541953 PRAM1Q96QH2 718 aa23.01■■□□□ 1.27
CLSTN3-213ENST00000541953 PLEKHG5O94827 1062 aa23■■□□□ 1.27
CLSTN3-213ENST00000541953 PHF8Q9UPP1 1060 aa23■■□□□ 1.27
CLSTN3-213ENST00000541953 ADGRB2O60241 1585 aa22.99■■□□□ 1.27
CLSTN3-213ENST00000541953 SIRT1Q96EB6 747 aa22.99■■□□□ 1.27
CLSTN3-213ENST00000541953 DLC1Q96QB1 1528 aa22.98■■□□□ 1.27
CLSTN3-213ENST00000541953 DHX57Q6P158 1386 aaKnown RBP22.98■■□□□ 1.27
CLSTN3-213ENST00000541953 TRPM3Q9HCF6 1732 aaPredicted RBP22.97■■□□□ 1.27
CLSTN3-213ENST00000541953 UNC5CLQ8IV45 518 aa22.97■■□□□ 1.27
CLSTN3-213ENST00000541953 NWD2Q9ULI1 1742 aa22.94■■□□□ 1.26
CLSTN3-213ENST00000541953 SBNO1A3KN83 1393 aa22.93■■□□□ 1.26
CLSTN3-213ENST00000541953 PMFBP1Q8TBY8 1022 aa22.93■■□□□ 1.26
CLSTN3-213ENST00000541953 NRAPQ86VF7 1730 aa22.93■■□□□ 1.26
CLSTN3-213ENST00000541953 PRR36Q9H6K5 1346 aa22.92■■□□□ 1.26
CLSTN3-213ENST00000541953 HIRIP3Q9BW71 556 aaPredicted RBP22.92■■□□□ 1.26
CLSTN3-213ENST00000541953 ALS2Q96Q42 1657 aa22.92■■□□□ 1.26
CLSTN3-213ENST00000541953 ANKARQ7Z5J8 1434 aa22.91■■□□□ 1.26
CLSTN3-213ENST00000541953 CRYBG1Q9Y4K1 1723 aa22.9■■□□□ 1.26
CLSTN3-213ENST00000541953 LMOD2Q6P5Q4 547 aa22.89■■□□□ 1.25
CLSTN3-213ENST00000541953 TRAK1Q9UPV9 953 aa22.89■■□□□ 1.25
CLSTN3-213ENST00000541953 POGKQ9P215 609 aa22.88■■□□□ 1.25
CLSTN3-213ENST00000541953 MINK1Q8N4C8 1332 aaPredicted RBP22.87■■□□□ 1.25
CLSTN3-213ENST00000541953 PSME1Q06323 249 aa22.87■■□□□ 1.25
CLSTN3-213ENST00000541953 ARHGEF28Q8N1W1 1705 aaKnown RBP22.87■■□□□ 1.25
CLSTN3-213ENST00000541953 TULP4Q9NRJ4 1543 aa22.87■■□□□ 1.25
CLSTN3-213ENST00000541953 HAP1P54257 671 aaPredicted RBP22.86■■□□□ 1.25
CLSTN3-213ENST00000541953 VPS72Q15906 364 aa22.86■■□□□ 1.25
CLSTN3-213ENST00000541953 SEPT12Q8IYM1 358 aa22.86■■□□□ 1.25
CLSTN3-213ENST00000541953 ARHGEF10O15013 1369 aa22.86■■□□□ 1.25
CLSTN3-213ENST00000541953 BLMP54132 1417 aaPredicted RBP22.85■■□□□ 1.25
CLSTN3-213ENST00000541953 FAM83GA6ND36 823 aa22.85■■□□□ 1.25
CLSTN3-213ENST00000541953 KDM2AQ9Y2K7 1162 aa22.85■■□□□ 1.25
CLSTN3-213ENST00000541953 DEFB132Q7Z7B7 95 aa22.84■■□□□ 1.25
CLSTN3-213ENST00000541953 ZRANB1Q9UGI0 708 aa22.83■■□□□ 1.25
CLSTN3-213ENST00000541953 DCAF11Q8TEB1 546 aa22.82■■□□□ 1.24
CLSTN3-213ENST00000541953 ACIN1Q9UKV3 1341 aaKnown RBP22.82■■□□□ 1.24
CLSTN3-213ENST00000541953 CCDC125Q86Z20 511 aa22.81■■□□□ 1.24
CLSTN3-213ENST00000541953 COL14A1Q05707 1796 aaKnown RBP22.81■■□□□ 1.24
CLSTN3-213ENST00000541953 ATP7BP35670 1465 aa22.8■■□□□ 1.24
CLSTN3-213ENST00000541953 CCDC9Q9Y3X0 531 aaKnown RBP22.8■■□□□ 1.24
CLSTN3-213ENST00000541953 ONECUT3O60422 494 aaPredicted RBP22.79■■□□□ 1.24
CLSTN3-213ENST00000541953 WASLO00401 505 aaPredicted RBP22.78■■□□□ 1.24
CLSTN3-213ENST00000541953 BTG4Q9NY30 223 aa22.77■■□□□ 1.24
CLSTN3-213ENST00000541953 ITSN1Q15811 1721 aa22.76■■□□□ 1.23
CLSTN3-213ENST00000541953 PHRF1Q9P1Y6 1649 aaKnown RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms