RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TNS1Q9HBL0 1735 aaKnown RBP12.67□□□□□ -0.38
CHD4-208ENST00000540960 NINLQ9Y2I6 1382 aa12.67□□□□□ -0.38
CHD4-208ENST00000540960 XRN1Q8IZH2 1706 aaKnown RBP12.66□□□□□ -0.38
CHD4-208ENST00000540960 ADGRL3Q9HAR2 1447 aa12.66□□□□□ -0.38
CHD4-208ENST00000540960 TMEM131LA2VDJ0 1609 aa12.66□□□□□ -0.38
CHD4-208ENST00000540960 CAMKK2Q96RR4 588 aa12.65□□□□□ -0.38
CHD4-208ENST00000540960 SLC52A1Q9NWF4 448 aa12.65□□□□□ -0.38
CHD4-208ENST00000540960 DUOX2Q9NRD8 1548 aa12.64□□□□□ -0.39
CHD4-208ENST00000540960 SPON1Q9HCB6 807 aa12.64□□□□□ -0.39
CHD4-208ENST00000540960 KCNQ2O43526 872 aa12.63□□□□□ -0.39
CHD4-208ENST00000540960 HDGFP51858 240 aaKnown RBP12.63□□□□□ -0.39
CHD4-208ENST00000540960 DISP2A7MBM2 1401 aa12.62□□□□□ -0.39
CHD4-208ENST00000540960 XPCQ01831 940 aaPredicted RBP12.62□□□□□ -0.39
CHD4-208ENST00000540960 VPS72Q15906 364 aa12.62□□□□□ -0.39
CHD4-208ENST00000540960 GIGYF1O75420 1035 aaPredicted RBP12.61□□□□□ -0.39
CHD4-208ENST00000540960 CCDC9Q9Y3X0 531 aaKnown RBP12.61□□□□□ -0.39
CHD4-208ENST00000540960 A0A0G2JS52 829 aa12.6□□□□□ -0.39
CHD4-208ENST00000540960 MYT1Q01538 1121 aa12.6□□□□□ -0.39
CHD4-208ENST00000540960 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.6□□□□□ -0.39
CHD4-208ENST00000540960 LMTK2Q8IWU2 1503 aa12.6□□□□□ -0.39
CHD4-208ENST00000540960 NUP188Q5SRE5 1749 aa12.59□□□□□ -0.39
CHD4-208ENST00000540960 CHGAP10645 457 aaKnown RBP12.59□□□□□ -0.39
CHD4-208ENST00000540960 RRP7BPQ9NSQ0 103 aa12.59□□□□□ -0.39
CHD4-208ENST00000540960 PXDNQ92626 1479 aa12.59□□□□□ -0.39
CHD4-208ENST00000540960 CAPN15O75808 1086 aa12.58□□□□□ -0.4
CHD4-208ENST00000540960 FAM98CQ17RN3 349 aaKnown RBP12.58□□□□□ -0.4
CHD4-208ENST00000540960 NRXN3Q9Y4C0 1643 aa12.58□□□□□ -0.4
CHD4-208ENST00000540960 RREB1Q92766 1687 aa12.57□□□□□ -0.4
CHD4-208ENST00000540960 METP08581 1390 aa12.57□□□□□ -0.4
CHD4-208ENST00000540960 KANK1Q14678 1352 aa12.57□□□□□ -0.4
CHD4-208ENST00000540960 ZEB1P37275 1124 aaPredicted RBP12.57□□□□□ -0.4
CHD4-208ENST00000540960 KIF15Q9NS87 1388 aa12.56□□□□□ -0.4
CHD4-208ENST00000540960 TRIM37O94972 964 aa12.56□□□□□ -0.4
CHD4-208ENST00000540960 SLC34A2O95436 690 aa12.56□□□□□ -0.4
CHD4-208ENST00000540960 PLCH1Q4KWH8 1693 aa12.56□□□□□ -0.4
CHD4-208ENST00000540960 ERBINQ96RT1 1412 aa12.55□□□□□ -0.4
CHD4-208ENST00000540960 NRKQ7Z2Y5 1582 aa12.55□□□□□ -0.4
CHD4-208ENST00000540960 USP32Q8NFA0 1604 aa12.55□□□□□ -0.4
CHD4-208ENST00000540960 FOXO3O43524 673 aa12.54□□□□□ -0.4
CHD4-208ENST00000540960 APBA3O96018 575 aa12.54□□□□□ -0.4
CHD4-208ENST00000540960 MYOM1P52179 1685 aa12.54□□□□□ -0.4
CHD4-208ENST00000540960 RPRD2Q5VT52 1461 aaKnown RBP12.53□□□□□ -0.4
CHD4-208ENST00000540960 PTPN23Q9H3S7 1636 aa12.53□□□□□ -0.4
CHD4-208ENST00000540960 PDGFDQ9GZP0 370 aaPredicted RBP12.53□□□□□ -0.4
CHD4-208ENST00000540960 NWD2Q9ULI1 1742 aa12.52□□□□□ -0.41
CHD4-208ENST00000540960 PLEKHG5O94827 1062 aa12.52□□□□□ -0.41
CHD4-208ENST00000540960 CABLES1Q8TDN4 633 aa12.52□□□□□ -0.41
CHD4-208ENST00000540960 NBPF8Q3BBV2 869 aa12.51□□□□□ -0.41
CHD4-208ENST00000540960 ESCO1Q5FWF5 840 aa12.51□□□□□ -0.41
CHD4-208ENST00000540960 NBPF14Q5TI25 921 aa12.51□□□□□ -0.41
CHD4-208ENST00000540960 NPHP3Q7Z494 1330 aa12.51□□□□□ -0.41
CHD4-208ENST00000540960 SYT17Q9BSW7 474 aa12.5□□□□□ -0.41
CHD4-208ENST00000540960 ADGRB2O60241 1585 aa12.49□□□□□ -0.41
CHD4-208ENST00000540960 ADGRL2O95490 1459 aa12.49□□□□□ -0.41
CHD4-208ENST00000540960 FHDC1Q9C0D6 1143 aaPredicted RBP12.49□□□□□ -0.41
CHD4-208ENST00000540960 SHANK3Q9BYB0 1731 aa12.48□□□□□ -0.41
CHD4-208ENST00000540960 PARD3Q8TEW0 1356 aa12.48□□□□□ -0.41
CHD4-208ENST00000540960 FAM83GA6ND36 823 aa12.48□□□□□ -0.41
CHD4-208ENST00000540960 PTGER2P43116 358 aa12.48□□□□□ -0.41
CHD4-208ENST00000540960 CASZ1Q86V15 1759 aa12.48□□□□□ -0.41
CHD4-208ENST00000540960 COL13A1Q5TAT6 717 aaPredicted RBP12.47□□□□□ -0.41
CHD4-208ENST00000540960 NRAPQ86VF7 1730 aa12.47□□□□□ -0.41
CHD4-208ENST00000540960 SPATA31A3Q5VYP0 1347 aa12.46□□□□□ -0.41
CHD4-208ENST00000540960 ZBTB7AO95365 584 aa12.46□□□□□ -0.41
CHD4-208ENST00000540960 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.41
CHD4-208ENST00000540960 ROBO2Q9HCK4 1378 aa12.45□□□□□ -0.42
CHD4-208ENST00000540960 THSD7AQ9UPZ6 1657 aa12.45□□□□□ -0.42
CHD4-208ENST00000540960 HSPA6P17066 643 aa12.45□□□□□ -0.42
CHD4-208ENST00000540960 PPARGC1BQ86YN6 1023 aaKnown RBP12.45□□□□□ -0.42
CHD4-208ENST00000540960 CROCC2H7BZ55 1655 aa12.44□□□□□ -0.42
CHD4-208ENST00000540960 ABCC5O15440 1437 aa12.44□□□□□ -0.42
CHD4-208ENST00000540960 NUTM2FA1L443 756 aa12.43□□□□□ -0.42
CHD4-208ENST00000540960 HAP1P54257 671 aaPredicted RBP12.43□□□□□ -0.42
CHD4-208ENST00000540960 FAM196AQ6ZSG2 479 aa12.43□□□□□ -0.42
CHD4-208ENST00000540960 ABCA3Q99758 1704 aa12.42□□□□□ -0.42
CHD4-208ENST00000540960 PRELPP51888 382 aa12.42□□□□□ -0.42
CHD4-208ENST00000540960 ANO8Q9HCE9 1232 aaPredicted RBP12.42□□□□□ -0.42
CHD4-208ENST00000540960 BTG4Q9NY30 223 aa12.42□□□□□ -0.42
CHD4-208ENST00000540960 MYOM3Q5VTT5 1437 aa12.42□□□□□ -0.42
CHD4-208ENST00000540960 SPATA31A5Q5VU36 1347 aa12.4□□□□□ -0.42
CHD4-208ENST00000540960 SPATA31A7Q8IWB4 1347 aa12.4□□□□□ -0.42
CHD4-208ENST00000540960 CHIC2Q9UKJ5 165 aa12.4□□□□□ -0.42
CHD4-208ENST00000540960 E9PCH4 1651 aa12.38□□□□□ -0.43
CHD4-208ENST00000540960 GPR162Q16538 588 aa12.38□□□□□ -0.43
CHD4-208ENST00000540960 KRT28Q7Z3Y7 464 aa12.38□□□□□ -0.43
CHD4-208ENST00000540960 DLC1Q96QB1 1528 aa12.37□□□□□ -0.43
CHD4-208ENST00000540960 LRPPRCP42704 1394 aaKnown RBP12.37□□□□□ -0.43
CHD4-208ENST00000540960 SGIP1Q9BQI5 828 aa12.36□□□□□ -0.43
CHD4-208ENST00000540960 IQGAP3Q86VI3 1631 aa12.36□□□□□ -0.43
CHD4-208ENST00000540960 RRBP1Q9P2E9 1410 aaKnown RBP12.36□□□□□ -0.43
CHD4-208ENST00000540960 KANK4Q5T7N3 995 aaPredicted RBP12.35□□□□□ -0.43
CHD4-208ENST00000540960 DNAJC5GQ8N7S2 189 aa12.35□□□□□ -0.43
CHD4-208ENST00000540960 GOLGB1Q14789 3259 aaKnown RBP12.35□□□□□ -0.43
CHD4-208ENST00000540960 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
CHD4-208ENST00000540960 TNS4Q8IZW8 715 aa12.34□□□□□ -0.43
CHD4-208ENST00000540960 PCDH10Q9P2E7 1040 aa12.34□□□□□ -0.43
CHD4-208ENST00000540960 CDC42BPGQ6DT37 1551 aa12.34□□□□□ -0.43
CHD4-208ENST00000540960 DAPK1P53355 1430 aa12.33□□□□□ -0.44
CHD4-208ENST00000540960 TNS3Q68CZ2 1445 aa12.33□□□□□ -0.44
CHD4-208ENST00000540960 ZNF326Q5BKZ1 582 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms