RNA–Protein interactions for RNA: ENST00000540783.5

RAPGEF4-215, Transcript of Rap guanine nucleotide exchange factor 4, human

TSL 2 BASIC

Gene RAPGEF4, Length 3,974 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAPGEF4-215	ENST00000540783	PTPRT	O14522	1441 aa		7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	C19orf44	Q9H6X5	657 aa		7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	KNSTRN	Q9Y448	316 aa		7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	RNF17	Q9BXT8	1623 aa	Known RBP	7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	USP47	Q96K76	1375 aa		7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	UNC13B	O14795	1591 aa		7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	MADD	Q8WXG6	1647 aa		7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	DISP3	Q9P2K9	1392 aa		7.41	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	TMEM132E	Q6IEE7	984 aa		7.4	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	MEX3C	Q5U5Q3	659 aa	Known RBP	7.4	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	PRAM1	Q96QH2	718 aa		7.4	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	BCORL1	Q5H9F3	1711 aa		7.4	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	IQGAP3	Q86VI3	1631 aa		7.4	□□□□□ -1.22
RAPGEF4-215	ENST00000540783	FER1L4	A9Z1Z3	1794 aa		7.4	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	PPM1G	O15355	546 aa	Predicted RBP	7.39	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	PIP4K2B	P78356	416 aa		7.39	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	TRPM2	O94759	1503 aa		7.39	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	PLA2R1	Q13018	1463 aa		7.39	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CLTC	Q00610	1675 aa	Known RBP	7.39	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	SIRT1	Q96EB6	747 aa		7.39	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ADGRF5	Q8IZF2	1346 aa		7.39	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ST20-MTHFS	A0A0A6YYL1	179 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CFAP53	Q96M91	514 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CRBN	Q96SW2	442 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	NFKBIB	Q15653	356 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ESCO1	Q5FWF5	840 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	FRAT1	Q92837	279 aa	Predicted RBP	7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	USP35	Q9P2H5	1018 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ZBTB7C	A1YPR0	619 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	LTK	P29376	864 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	GSE1	Q14687	1217 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ATAD2	Q6PL18	1390 aa		7.38	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ZNF692	Q9BU19	519 aa	Predicted RBP	7.37	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	DAXX	Q9UER7	740 aa	Predicted RBP	7.37	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ADGRB3	O60242	1522 aa		7.37	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CAMSAP1	Q5T5Y3	1602 aa		7.37	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	C20orf194	Q5TEA3	1177 aa		7.37	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ZFYVE9	O95405	1425 aa		7.37	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	NUTM2F	A1L443	756 aa		7.36	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	SPATA31D1	Q6ZQQ2	1576 aa		7.36	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	7.36	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CC2D1B	Q5T0F9	858 aa	Known RBP	7.36	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	NPHP3	Q7Z494	1330 aa		7.36	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	MYBBP1A	Q9BQG0	1328 aa	Known RBP	7.36	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	MS4A1	P11836	297 aa		7.35	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CERK	Q8TCT0	537 aa		7.35	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CCDC61	Q9Y6R9	512 aa		7.35	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	MROH2A	A6NES4	1674 aa		7.35	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	PLEKHG5	O94827	1062 aa		7.35	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	PHF8	Q9UPP1	1060 aa		7.35	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	ABCC11	Q96J66	1382 aa		7.34	□□□□□ -1.23
RAPGEF4-215	ENST00000540783		A0A0G2JS52	829 aa		7.34	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	FRAT2	O75474	233 aa	Predicted RBP	7.34	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	RGS3	P49796	1198 aa		7.34	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	DDRGK1	Q96HY6	314 aa		7.34	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	CDK19	Q9BWU1	502 aa		7.34	□□□□□ -1.23
RAPGEF4-215	ENST00000540783	WASL	O00401	505 aa	Predicted RBP	7.34	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	CSB-PGBD3	P0DP91	1061 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	NLRP13	Q86W25	1043 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	CCDC9	Q9Y3X0	531 aa	Known RBP	7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	ADAMTSL3	P82987	1691 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	RALBP1	Q15311	655 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	COG3	Q96JB2	828 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	MYOM2	P54296	1465 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	VWDE	Q8N2E2	1590 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	YTHDC2	Q9H6S0	1430 aa	Known RBP	7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	PUS7	Q96PZ0	661 aa	Known RBP	7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	CEP152	O94986	1710 aa		7.33	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	CGNL1	Q0VF96	1302 aa		7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	NUDT16	Q96DE0	195 aa	Known RBP	7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	PNN	Q9H307	717 aa	Known RBP	7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	BRD4	O60885	1362 aa	Predicted RBP	7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	TMEM94	Q12767	1356 aa		7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	NINL	Q9Y2I6	1382 aa		7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	NBPF1	Q3BBV0	1214 aa		7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	MORC1	Q86VD1	984 aa		7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	LRRC59	Q96AG4	307 aa	Known RBP	7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	DEPDC5	O75140	1603 aa		7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	WAPL	Q7Z5K2	1190 aa		7.32	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	EVA1C	P58658	441 aa		7.31	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	ARX	Q96QS3	562 aa		7.31	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	SLAIN2	Q9P270	581 aa		7.31	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	PRAG1	Q86YV5	1406 aa		7.31	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	NCOA3	Q9Y6Q9	1424 aa		7.31	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	KIF1B	O60333	1816 aa		7.3	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	AMPH	P49418	695 aa		7.3	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	PDE3B	Q13370	1112 aa		7.3	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	CABP2	Q9NPB3	220 aa		7.3	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	SYNM	O15061	1565 aa		7.3	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	PREX1	Q8TCU6	1659 aa		7.3	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	NLRP6	P59044	892 aa		7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	WDR43	Q15061	677 aa	Known RBP eCLIP	7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	KRT28	Q7Z3Y7	464 aa		7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	ABTB2	Q8N961	1025 aa		7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	KCNH5	Q8NCM2	988 aa		7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	CFAP65	Q6ZU64	1925 aa	Known RBP	7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	KTN1	Q86UP2	1357 aa	Known RBP	7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	FAM135B	Q49AJ0	1406 aa		7.29	□□□□□ -1.24
RAPGEF4-215	ENST00000540783	CPS1	P31327	1500 aa		7.29	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 71 ms