RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 LRPPRCP42704 1394 aaKnown RBP12.57□□□□□ -0.4
USP28-203ENST00000537490 ESCO1Q5FWF5 840 aa12.57□□□□□ -0.4
USP28-203ENST00000537490 UPF1Q92900 1129 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP28-203ENST00000537490 QTRT2Q9H974 415 aaKnown RBP12.57□□□□□ -0.4
USP28-203ENST00000537490 ABCC11Q96J66 1382 aa12.56□□□□□ -0.4
USP28-203ENST00000537490 PLEKHH1Q9ULM0 1364 aa12.56□□□□□ -0.4
USP28-203ENST00000537490 NUTM2FA1L443 756 aa12.56□□□□□ -0.4
USP28-203ENST00000537490 NGLY1Q96IV0 654 aa12.56□□□□□ -0.4
USP28-203ENST00000537490 TECPR2O15040 1411 aa12.55□□□□□ -0.4
USP28-203ENST00000537490 FOXO3O43524 673 aa12.55□□□□□ -0.4
USP28-203ENST00000537490 C14orf93Q9H972 538 aaKnown RBP12.55□□□□□ -0.4
USP28-203ENST00000537490 PIK3C2GO75747 1445 aa12.54□□□□□ -0.4
USP28-203ENST00000537490 XPCQ01831 940 aaPredicted RBP12.54□□□□□ -0.4
USP28-203ENST00000537490 CFAP70Q5T0N1 1121 aa12.54□□□□□ -0.4
USP28-203ENST00000537490 NPHP3Q7Z494 1330 aa12.54□□□□□ -0.4
USP28-203ENST00000537490 ACIN1Q9UKV3 1341 aaKnown RBP12.54□□□□□ -0.4
USP28-203ENST00000537490 LAMC1P11047 1609 aa12.54□□□□□ -0.4
USP28-203ENST00000537490 RBM6P78332 1123 aaKnown RBP12.53□□□□□ -0.4
USP28-203ENST00000537490 SIRT1Q96EB6 747 aa12.53□□□□□ -0.4
USP28-203ENST00000537490 RAB3GAP2Q9H2M9 1393 aa12.53□□□□□ -0.4
USP28-203ENST00000537490 YTHDC2Q9H6S0 1430 aaKnown RBP12.53□□□□□ -0.4
USP28-203ENST00000537490 CDK12Q9NYV4 1490 aaPredicted RBP12.53□□□□□ -0.4
USP28-203ENST00000537490 POTEDQ86YR6 584 aa12.52□□□□□ -0.41
USP28-203ENST00000537490 CDC42BPGQ6DT37 1551 aa12.52□□□□□ -0.41
USP28-203ENST00000537490 FNBP4Q8N3X1 1017 aaPredicted RBP12.51□□□□□ -0.41
USP28-203ENST00000537490 USP21Q9UK80 565 aa12.51□□□□□ -0.41
USP28-203ENST00000537490 IFT172Q9UG01 1749 aa12.51□□□□□ -0.41
USP28-203ENST00000537490 RGS12O14924 1447 aa12.5□□□□□ -0.41
USP28-203ENST00000537490 PXDNQ92626 1479 aa12.5□□□□□ -0.41
USP28-203ENST00000537490 NRXN1Q9ULB1 1477 aa12.49□□□□□ -0.41
USP28-203ENST00000537490 DHX57Q6P158 1386 aaKnown RBP12.49□□□□□ -0.41
USP28-203ENST00000537490 MYOM2P54296 1465 aa12.48□□□□□ -0.41
USP28-203ENST00000537490 SAFB2Q14151 953 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP28-203ENST00000537490 TRPC5Q9UL62 973 aaPredicted RBP12.48□□□□□ -0.41
USP28-203ENST00000537490 SPATA31A3Q5VYP0 1347 aa12.47□□□□□ -0.41
USP28-203ENST00000537490 KRT28Q7Z3Y7 464 aa12.47□□□□□ -0.41
USP28-203ENST00000537490 PRAM1Q96QH2 718 aa12.47□□□□□ -0.41
USP28-203ENST00000537490 KNDC1Q76NI1 1749 aa12.46□□□□□ -0.41
USP28-203ENST00000537490 PHF8Q9UPP1 1060 aa12.46□□□□□ -0.41
USP28-203ENST00000537490 KDM2AQ9Y2K7 1162 aa12.46□□□□□ -0.41
USP28-203ENST00000537490 COL22A1Q8NFW1 1626 aaPredicted RBP12.46□□□□□ -0.41
USP28-203ENST00000537490 ATRNO75882 1429 aa12.45□□□□□ -0.42
USP28-203ENST00000537490 MSH5O43196 834 aa12.45□□□□□ -0.42
USP28-203ENST00000537490 POGKQ9P215 609 aa12.45□□□□□ -0.42
USP28-203ENST00000537490 DCAF11Q8TEB1 546 aa12.44□□□□□ -0.42
USP28-203ENST00000537490 TRAK1Q9UPV9 953 aa12.44□□□□□ -0.42
USP28-203ENST00000537490 FMN2Q9NZ56 1722 aa12.44□□□□□ -0.42
USP28-203ENST00000537490 BCL9LQ86UU0 1499 aa12.44□□□□□ -0.42
USP28-203ENST00000537490 HRCP23327 699 aa12.43□□□□□ -0.42
USP28-203ENST00000537490 PSME1Q06323 249 aa12.42□□□□□ -0.42
USP28-203ENST00000537490 PMFBP1Q8TBY8 1022 aa12.42□□□□□ -0.42
USP28-203ENST00000537490 CABLES1Q8TDN4 633 aa12.42□□□□□ -0.42
USP28-203ENST00000537490 GJD4Q96KN9 370 aaPredicted RBP12.42□□□□□ -0.42
USP28-203ENST00000537490 PLEKHG5O94827 1062 aa12.41□□□□□ -0.42
USP28-203ENST00000537490 UNC5CLQ8IV45 518 aa12.41□□□□□ -0.42
USP28-203ENST00000537490 HIRIP3Q9BW71 556 aaPredicted RBP12.41□□□□□ -0.42
USP28-203ENST00000537490 DLC1Q96QB1 1528 aa12.41□□□□□ -0.42
USP28-203ENST00000537490 MINK1Q8N4C8 1332 aaPredicted RBP12.4□□□□□ -0.42
USP28-203ENST00000537490 ADGRB1O14514 1584 aa12.4□□□□□ -0.42
USP28-203ENST00000537490 LMOD2Q6P5Q4 547 aa12.4□□□□□ -0.42
USP28-203ENST00000537490 ATAD2Q6PL18 1390 aa12.4□□□□□ -0.42
USP28-203ENST00000537490 KIF1AQ12756 1690 aa12.39□□□□□ -0.43
USP28-203ENST00000537490 TNS3Q68CZ2 1445 aa12.39□□□□□ -0.43
USP28-203ENST00000537490 SLIT2O94813 1529 aa12.39□□□□□ -0.43
USP28-203ENST00000537490 STAC3Q96MF2 364 aa12.39□□□□□ -0.43
USP28-203ENST00000537490 SBNO1A3KN83 1393 aa12.39□□□□□ -0.43
USP28-203ENST00000537490 PRR36Q9H6K5 1346 aa12.38□□□□□ -0.43
USP28-203ENST00000537490 ANKARQ7Z5J8 1434 aa12.38□□□□□ -0.43
USP28-203ENST00000537490 HAP1P54257 671 aaPredicted RBP12.38□□□□□ -0.43
USP28-203ENST00000537490 WASLO00401 505 aaPredicted RBP12.37□□□□□ -0.43
USP28-203ENST00000537490 RGPD8O14715 1765 aaPredicted RBP12.37□□□□□ -0.43
USP28-203ENST00000537490 RALGAPBQ86X10 1494 aa12.35□□□□□ -0.43
USP28-203ENST00000537490 ARHGEF10O15013 1369 aa12.35□□□□□ -0.43
USP28-203ENST00000537490 MARF1Q9Y4F3 1742 aaKnown RBP12.35□□□□□ -0.43
USP28-203ENST00000537490 FAM83GA6ND36 823 aa12.35□□□□□ -0.43
USP28-203ENST00000537490 USP32Q8NFA0 1604 aa12.35□□□□□ -0.43
USP28-203ENST00000537490 ADGRB2O60241 1585 aa12.35□□□□□ -0.43
USP28-203ENST00000537490 VPS72Q15906 364 aa12.34□□□□□ -0.43
USP28-203ENST00000537490 GLI3P10071 1580 aa12.34□□□□□ -0.43
USP28-203ENST00000537490 GPRASP1Q5JY77 1395 aa12.33□□□□□ -0.44
USP28-203ENST00000537490 NGDNQ8NEJ9 315 aaKnown RBP12.33□□□□□ -0.44
USP28-203ENST00000537490 EIF3AQ14152 1382 aaKnown RBP12.32□□□□□ -0.44
USP28-203ENST00000537490 ONECUT3O60422 494 aaPredicted RBP12.32□□□□□ -0.44
USP28-203ENST00000537490 CCDC125Q86Z20 511 aa12.32□□□□□ -0.44
USP28-203ENST00000537490 SEPT12Q8IYM1 358 aa12.32□□□□□ -0.44
USP28-203ENST00000537490 NUDT16Q96DE0 195 aaKnown RBP12.32□□□□□ -0.44
USP28-203ENST00000537490 CCDC9Q9Y3X0 531 aaKnown RBP12.32□□□□□ -0.44
USP28-203ENST00000537490 TULP4Q9NRJ4 1543 aa12.32□□□□□ -0.44
USP28-203ENST00000537490 NBPF1Q3BBV0 1214 aa12.31□□□□□ -0.44
USP28-203ENST00000537490 CDK19Q9BWU1 502 aa12.31□□□□□ -0.44
USP28-203ENST00000537490 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.31□□□□□ -0.44
USP28-203ENST00000537490 PAK3O75914 559 aaPredicted RBP12.3□□□□□ -0.44
USP28-203ENST00000537490 BTG4Q9NY30 223 aa12.3□□□□□ -0.44
USP28-203ENST00000537490 TRPM3Q9HCF6 1732 aaPredicted RBP12.28□□□□□ -0.44
USP28-203ENST00000537490 ZRANB1Q9UGI0 708 aa12.28□□□□□ -0.44
USP28-203ENST00000537490 ATP7BP35670 1465 aa12.27□□□□□ -0.44
USP28-203ENST00000537490 FAM98CQ17RN3 349 aaKnown RBP12.27□□□□□ -0.45
USP28-203ENST00000537490 KRT27Q7Z3Y8 459 aa12.27□□□□□ -0.45
USP28-203ENST00000537490 DEFB132Q7Z7B7 95 aa12.27□□□□□ -0.45
USP28-203ENST00000537490 CCDC61Q9Y6R9 512 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms