RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 HAP1P54257 671 aaPredicted RBP9.05□□□□□ -0.96
USP48-215ENST00000534705 ATP13A2Q9NQ11 1180 aa9.04□□□□□ -0.96
USP48-215ENST00000534705 TERTO14746 1132 aaKnown RBP9.03□□□□□ -0.96
USP48-215ENST00000534705 GNPATO15228 680 aa9.03□□□□□ -0.96
USP48-215ENST00000534705 SMYD5Q6GMV2 418 aa9.03□□□□□ -0.96
USP48-215ENST00000534705 SEMA3EO15041 775 aa9.02□□□□□ -0.97
USP48-215ENST00000534705 SMPD1P17405 629 aa9.02□□□□□ -0.97
USP48-215ENST00000534705 KIFC2Q96AC6 838 aa9.02□□□□□ -0.97
USP48-215ENST00000534705 TRIM47Q96LD4 638 aa9.01□□□□□ -0.97
USP48-215ENST00000534705 REPIN1Q9BWE0 567 aaKnown RBP9.01□□□□□ -0.97
USP48-215ENST00000534705 PRDM9Q9NQV7 894 aa9.01□□□□□ -0.97
USP48-215ENST00000534705 FECHP22830 423 aa9□□□□□ -0.97
USP48-215ENST00000534705 TRIM32Q13049 653 aa9□□□□□ -0.97
USP48-215ENST00000534705 Q3C1V9 767 aa9□□□□□ -0.97
USP48-215ENST00000534705 FAM181BA6NEQ2 426 aa8.98□□□□□ -0.97
USP48-215ENST00000534705 SNRPBP14678 240 aaKnown RBP8.98□□□□□ -0.97
USP48-215ENST00000534705 MMP16P51512 607 aa8.98□□□□□ -0.97
USP48-215ENST00000534705 VSIG10Q8N0Z9 540 aa8.98□□□□□ -0.97
USP48-215ENST00000534705 MRGPRX2Q96LB1 330 aa8.98□□□□□ -0.97
USP48-215ENST00000534705 RNF19BQ6ZMZ0 732 aa8.97□□□□□ -0.97
USP48-215ENST00000534705 SLC16A10Q8TF71 515 aa8.97□□□□□ -0.97
USP48-215ENST00000534705 J3QL48 77 aa8.95□□□□□ -0.98
USP48-215ENST00000534705 RBM26Q5T8P6 1007 aaKnown RBP8.95□□□□□ -0.98
USP48-215ENST00000534705 TESPA1A2RU30 521 aaPredicted RBP8.93□□□□□ -0.98
USP48-215ENST00000534705 HPS1Q92902 700 aa8.93□□□□□ -0.98
USP48-215ENST00000534705 WNT7BP56706 349 aa8.92□□□□□ -0.98
USP48-215ENST00000534705 USB1Q9BQ65 265 aaKnown RBP8.92□□□□□ -0.98
USP48-215ENST00000534705 DXOO77932 396 aaKnown RBP8.91□□□□□ -0.98
USP48-215ENST00000534705 RC3H1Q5TC82 1133 aaKnown RBP8.91□□□□□ -0.98
USP48-215ENST00000534705 NLRP7Q8WX94 980 aa8.91□□□□□ -0.98
USP48-215ENST00000534705 LCE2CQ5TA81 110 aa8.9□□□□□ -0.98
USP48-215ENST00000534705 KDM2AQ9Y2K7 1162 aa8.9□□□□□ -0.98
USP48-215ENST00000534705 GPR37O15354 613 aa8.89□□□□□ -0.99
USP48-215ENST00000534705 SLC24A1O60721 1099 aa8.89□□□□□ -0.99
USP48-215ENST00000534705 NPAS3Q8IXF0 933 aa8.89□□□□□ -0.99
USP48-215ENST00000534705 CCDC24Q8N4L8 307 aa8.89□□□□□ -0.99
USP48-215ENST00000534705 NXF1Q9UBU9 619 aaKnown RBP8.89□□□□□ -0.99
USP48-215ENST00000534705 PHOX2BQ99453 314 aa8.88□□□□□ -0.99
USP48-215ENST00000534705 KDM4AO75164 1064 aa8.87□□□□□ -0.99
USP48-215ENST00000534705 CD46P15529 392 aa8.87□□□□□ -0.99
USP48-215ENST00000534705 USP46P62068 366 aa8.87□□□□□ -0.99
USP48-215ENST00000534705 IRF7Q92985 503 aa8.86□□□□□ -0.99
USP48-215ENST00000534705 ALDH1A1P00352 501 aa8.85□□□□□ -0.99
USP48-215ENST00000534705 SKOR1P84550 965 aa8.85□□□□□ -0.99
USP48-215ENST00000534705 ZSCAN1Q8NBB4 408 aa8.84□□□□□ -0.99
USP48-215ENST00000534705 GMPRP36959 345 aa8.82□□□□□ -1
USP48-215ENST00000534705 GPIHBP1Q8IV16 184 aa8.81□□□□□ -1
USP48-215ENST00000534705 WASF2Q9Y6W5 498 aa8.81□□□□□ -1
USP48-215ENST00000534705 CAPN5O15484 640 aaPredicted RBP8.8□□□□□ -1
USP48-215ENST00000534705 JUNDP17535 347 aa8.8□□□□□ -1
USP48-215ENST00000534705 EHBP1Q8NDI1 1231 aa8.8□□□□□ -1
USP48-215ENST00000534705 SIAH2O43255 324 aa8.79□□□□□ -1
USP48-215ENST00000534705 H3BM21 787 aa8.78□□□□□ -1
USP48-215ENST00000534705 HOXA2O43364 376 aa8.77□□□□□ -1.01
USP48-215ENST00000534705 TRIM46Q7Z4K8 759 aa8.77□□□□□ -1.01
USP48-215ENST00000534705 LORP23490 312 aaPredicted RBP8.76□□□□□ -1.01
USP48-215ENST00000534705 NUDT12Q9BQG2 462 aa8.76□□□□□ -1.01
USP48-215ENST00000534705 BMP1P13497 986 aa8.75□□□□□ -1.01
USP48-215ENST00000534705 MAP2K5Q13163 448 aa8.75□□□□□ -1.01
USP48-215ENST00000534705 RETREG3Q86VR2 466 aa8.74□□□□□ -1.01
USP48-215ENST00000534705 HLA-CQ95604 372 aa8.74□□□□□ -1.01
USP48-215ENST00000534705 PTCRAQ6ISU1 281 aaPredicted RBP8.73□□□□□ -1.01
USP48-215ENST00000534705 PLEKHG3A1L390 1219 aa8.72□□□□□ -1.01
USP48-215ENST00000534705 VEGFBP49765 207 aa8.72□□□□□ -1.01
USP48-215ENST00000534705 MDM2Q00987 491 aaPredicted RBP8.72□□□□□ -1.01
USP48-215ENST00000534705 LOC100996750A0A140TA64 210 aa8.71□□□□□ -1.02
USP48-215ENST00000534705 IRF6O14896 467 aa8.71□□□□□ -1.02
USP48-215ENST00000534705 SH3BP2P78314 561 aa8.71□□□□□ -1.02
USP48-215ENST00000534705 NUTM1Q86Y26 1132 aa8.71□□□□□ -1.02
USP48-215ENST00000534705 ZFP42Q96MM3 310 aa8.71□□□□□ -1.02
USP48-215ENST00000534705 KRTAP4-6Q9BYQ5 205 aa8.71□□□□□ -1.02
USP48-215ENST00000534705 SCARF1Q14162 830 aa8.7□□□□□ -1.02
USP48-215ENST00000534705 MPNDQ8N594 471 aa8.7□□□□□ -1.02
USP48-215ENST00000534705 SYMPKQ92797 1274 aaKnown RBP8.7□□□□□ -1.02
USP48-215ENST00000534705 ERBB4Q15303 1308 aa8.7□□□□□ -1.02
USP48-215ENST00000534705 MINK1Q8N4C8 1332 aaPredicted RBP8.7□□□□□ -1.02
USP48-215ENST00000534705 CCNYL3P0C7X3 344 aa8.69□□□□□ -1.02
USP48-215ENST00000534705 GUCA2AQ02747 115 aa8.69□□□□□ -1.02
USP48-215ENST00000534705 MS4A1P11836 297 aa8.68□□□□□ -1.02
USP48-215ENST00000534705 CLCN1P35523 988 aa8.68□□□□□ -1.02
USP48-215ENST00000534705 GPCPD1Q9NPB8 672 aa8.68□□□□□ -1.02
USP48-215ENST00000534705 VARSP26640 1264 aaKnown RBP8.67□□□□□ -1.02
USP48-215ENST00000534705 EVA1BQ9NVM1 165 aa8.67□□□□□ -1.02
USP48-215ENST00000534705 C6orf229H3BNL8 230 aa8.66□□□□□ -1.02
USP48-215ENST00000534705 TULP1O00294 542 aaPredicted RBP8.66□□□□□ -1.02
USP48-215ENST00000534705 PTPRNQ16849 979 aa8.66□□□□□ -1.02
USP48-215ENST00000534705 MRPL14Q6P1L8 145 aaKnown RBP8.66□□□□□ -1.02
USP48-215ENST00000534705 UNC93B1Q9H1C4 597 aa8.66□□□□□ -1.02
USP48-215ENST00000534705 VSIG8P0DPA2 414 aa8.65□□□□□ -1.02
USP48-215ENST00000534705 FDX1P10109 184 aa8.65□□□□□ -1.02
USP48-215ENST00000534705 NNTQ13423 1086 aa8.65□□□□□ -1.02
USP48-215ENST00000534705 FAM217BQ9NTX9 383 aaPredicted RBP8.65□□□□□ -1.02
USP48-215ENST00000534705 KCNH2Q12809 1159 aa8.64□□□□□ -1.03
USP48-215ENST00000534705 KRI1Q8N9T8 703 aaKnown RBP8.64□□□□□ -1.03
USP48-215ENST00000534705 BAP1Q92560 729 aa8.64□□□□□ -1.03
USP48-215ENST00000534705 TLL2Q9Y6L7 1015 aa8.63□□□□□ -1.03
USP48-215ENST00000534705 ADH1CP00326 375 aa8.62□□□□□ -1.03
USP48-215ENST00000534705 KCNMA1Q12791 1236 aa8.62□□□□□ -1.03
USP48-215ENST00000534705 LINC01559Q495D7 138 aa8.62□□□□□ -1.03
USP48-215ENST00000534705 ZNF511Q8NB15 262 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms