RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 WAPLQ7Z5K2 1190 aa21.74■■□□□ 1.07
VPS28-215ENST00000531924 LRPPRCP42704 1394 aaKnown RBP21.74■■□□□ 1.07
VPS28-215ENST00000531924 NGLY1Q96IV0 654 aa21.73■■□□□ 1.07
VPS28-215ENST00000531924 SOS2Q07890 1332 aaPredicted RBP21.72■■□□□ 1.07
VPS28-215ENST00000531924 NUTM2FA1L443 756 aa21.71■■□□□ 1.07
VPS28-215ENST00000531924 NPHP3Q7Z494 1330 aa21.71■■□□□ 1.07
VPS28-215ENST00000531924 ABCC11Q96J66 1382 aa21.71■■□□□ 1.07
VPS28-215ENST00000531924 RAB3GAP2Q9H2M9 1393 aa21.71■■□□□ 1.07
VPS28-215ENST00000531924 PIK3C2GO75747 1445 aa21.71■■□□□ 1.07
VPS28-215ENST00000531924 TECPR2O15040 1411 aa21.69■■□□□ 1.06
VPS28-215ENST00000531924 QTRT2Q9H974 415 aaKnown RBP21.68■■□□□ 1.06
VPS28-215ENST00000531924 CDC42BPGQ6DT37 1551 aa21.68■■□□□ 1.06
VPS28-215ENST00000531924 YTHDC2Q9H6S0 1430 aaKnown RBP21.67■■□□□ 1.06
VPS28-215ENST00000531924 FOXO3O43524 673 aa21.67■■□□□ 1.06
VPS28-215ENST00000531924 C14orf93Q9H972 538 aaKnown RBP21.67■■□□□ 1.06
VPS28-215ENST00000531924 DHX57Q6P158 1386 aaKnown RBP21.66■■□□□ 1.06
VPS28-215ENST00000531924 XPCQ01831 940 aaPredicted RBP21.65■■□□□ 1.06
VPS28-215ENST00000531924 CFAP70Q5T0N1 1121 aa21.65■■□□□ 1.06
VPS28-215ENST00000531924 IFT172Q9UG01 1749 aa21.65■■□□□ 1.06
VPS28-215ENST00000531924 PLEKHH1Q9ULM0 1364 aa21.64■■□□□ 1.06
VPS28-215ENST00000531924 RBM6P78332 1123 aaKnown RBP21.64■■□□□ 1.05
VPS28-215ENST00000531924 SIRT1Q96EB6 747 aa21.64■■□□□ 1.05
VPS28-215ENST00000531924 LAMC1P11047 1609 aa21.63■■□□□ 1.05
VPS28-215ENST00000531924 POGKQ9P215 609 aa21.62■■□□□ 1.05
VPS28-215ENST00000531924 USP21Q9UK80 565 aa21.62■■□□□ 1.05
VPS28-215ENST00000531924 CDK12Q9NYV4 1490 aaPredicted RBP21.61■■□□□ 1.05
VPS28-215ENST00000531924 MYOM2P54296 1465 aa21.6■■□□□ 1.05
VPS28-215ENST00000531924 SAFB2Q14151 953 aaKnown RBP eCLIP21.6■■□□□ 1.05
VPS28-215ENST00000531924 UPF1Q92900 1129 aaKnown RBP eCLIP21.6■■□□□ 1.05
VPS28-215ENST00000531924 PRAM1Q96QH2 718 aa21.59■■□□□ 1.05
VPS28-215ENST00000531924 KDM2AQ9Y2K7 1162 aa21.59■■□□□ 1.05
VPS28-215ENST00000531924 KNDC1Q76NI1 1749 aa21.58■■□□□ 1.05
VPS28-215ENST00000531924 TRPC5Q9UL62 973 aaPredicted RBP21.58■■□□□ 1.05
VPS28-215ENST00000531924 NRXN1Q9ULB1 1477 aa21.58■■□□□ 1.04
VPS28-215ENST00000531924 PXDNQ92626 1479 aa21.57■■□□□ 1.04
VPS28-215ENST00000531924 DCAF11Q8TEB1 546 aa21.56■■□□□ 1.04
VPS28-215ENST00000531924 HRCP23327 699 aa21.55■■□□□ 1.04
VPS28-215ENST00000531924 HAP1P54257 671 aaPredicted RBP21.55■■□□□ 1.04
VPS28-215ENST00000531924 PSME1Q06323 249 aa21.55■■□□□ 1.04
VPS28-215ENST00000531924 KRT28Q7Z3Y7 464 aa21.55■■□□□ 1.04
VPS28-215ENST00000531924 FNBP4Q8N3X1 1017 aaPredicted RBP21.55■■□□□ 1.04
VPS28-215ENST00000531924 PHF8Q9UPP1 1060 aa21.55■■□□□ 1.04
VPS28-215ENST00000531924 TRAK1Q9UPV9 953 aa21.53■■□□□ 1.04
VPS28-215ENST00000531924 RGS12O14924 1447 aa21.53■■□□□ 1.04
VPS28-215ENST00000531924 COL22A1Q8NFW1 1626 aaPredicted RBP21.52■■□□□ 1.04
VPS28-215ENST00000531924 STAC3Q96MF2 364 aa21.52■■□□□ 1.04
VPS28-215ENST00000531924 SPATA31A3Q5VYP0 1347 aa21.52■■□□□ 1.03
VPS28-215ENST00000531924 FMN2Q9NZ56 1722 aa21.52■■□□□ 1.03
VPS28-215ENST00000531924 LMOD2Q6P5Q4 547 aa21.51■■□□□ 1.03
VPS28-215ENST00000531924 KIF1AQ12756 1690 aa21.5■■□□□ 1.03
VPS28-215ENST00000531924 PLEKHG5O94827 1062 aa21.49■■□□□ 1.03
VPS28-215ENST00000531924 DLC1Q96QB1 1528 aa21.47■■□□□ 1.03
VPS28-215ENST00000531924 HIRIP3Q9BW71 556 aaPredicted RBP21.47■■□□□ 1.03
VPS28-215ENST00000531924 PMFBP1Q8TBY8 1022 aa21.46■■□□□ 1.03
VPS28-215ENST00000531924 MINK1Q8N4C8 1332 aaPredicted RBP21.46■■□□□ 1.03
VPS28-215ENST00000531924 ATAD2Q6PL18 1390 aa21.46■■□□□ 1.03
VPS28-215ENST00000531924 ATRNO75882 1429 aa21.46■■□□□ 1.03
VPS28-215ENST00000531924 EIF3AQ14152 1382 aaKnown RBP21.45■■□□□ 1.02
VPS28-215ENST00000531924 TNS3Q68CZ2 1445 aa21.44■■□□□ 1.02
VPS28-215ENST00000531924 ANKARQ7Z5J8 1434 aa21.44■■□□□ 1.02
VPS28-215ENST00000531924 UNC5CLQ8IV45 518 aa21.43■■□□□ 1.02
VPS28-215ENST00000531924 GJD4Q96KN9 370 aaPredicted RBP21.43■■□□□ 1.02
VPS28-215ENST00000531924 BCL9LQ86UU0 1499 aa21.43■■□□□ 1.02
VPS28-215ENST00000531924 SBNO1A3KN83 1393 aa21.42■■□□□ 1.02
VPS28-215ENST00000531924 ADGRB1O14514 1584 aa21.42■■□□□ 1.02
VPS28-215ENST00000531924 ARHGEF10O15013 1369 aa21.42■■□□□ 1.02
VPS28-215ENST00000531924 CABLES1Q8TDN4 633 aa21.42■■□□□ 1.02
VPS28-215ENST00000531924 GPRASP1Q5JY77 1395 aa21.41■■□□□ 1.02
VPS28-215ENST00000531924 WASLO00401 505 aaPredicted RBP21.4■■□□□ 1.02
VPS28-215ENST00000531924 NGDNQ8NEJ9 315 aaKnown RBP21.39■■□□□ 1.01
VPS28-215ENST00000531924 CCDC9Q9Y3X0 531 aaKnown RBP21.38■■□□□ 1.01
VPS28-215ENST00000531924 RGPD8O14715 1765 aaPredicted RBP21.38■■□□□ 1.01
VPS28-215ENST00000531924 MARF1Q9Y4F3 1742 aaKnown RBP21.37■■□□□ 1.01
VPS28-215ENST00000531924 ADGRB2O60241 1585 aa21.36■■□□□ 1.01
VPS28-215ENST00000531924 PAK3O75914 559 aaPredicted RBP21.35■■□□□ 1.01
VPS28-215ENST00000531924 SLIT2O94813 1529 aa21.34■■□□□ 1.01
VPS28-215ENST00000531924 USP32Q8NFA0 1604 aa21.34■■□□□ 1.01
VPS28-215ENST00000531924 PRR36Q9H6K5 1346 aa21.33■■□□□ 1.01
VPS28-215ENST00000531924 TULP4Q9NRJ4 1543 aa21.33■■□□□ 1
VPS28-215ENST00000531924 RALGAPBQ86X10 1494 aa21.32■■□□□ 1
VPS28-215ENST00000531924 VPS72Q15906 364 aa21.31■■□□□ 1
VPS28-215ENST00000531924 CCDC125Q86Z20 511 aa21.31■■□□□ 1
VPS28-215ENST00000531924 NUDT16Q96DE0 195 aaKnown RBP21.31■■□□□ 1
VPS28-215ENST00000531924 A0A0G2JS52 829 aa21.29■■□□□ 1
VPS28-215ENST00000531924 FAM83GA6ND36 823 aa21.29■■□□□ 1
VPS28-215ENST00000531924 MYT1Q01538 1121 aa21.29■■□□□ 1
VPS28-215ENST00000531924 CDK19Q9BWU1 502 aa21.29■■□□□ 1
VPS28-215ENST00000531924 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.28■■□□□ 1
VPS28-215ENST00000531924 SEPT12Q8IYM1 358 aa21.27■■□□□ 1
VPS28-215ENST00000531924 BTG4Q9NY30 223 aa21.26■□□□□ 0.99
VPS28-215ENST00000531924 GLI3P10071 1580 aa21.24■□□□□ 0.99
VPS28-215ENST00000531924 SF3B2Q13435 895 aaKnown RBP21.24■□□□□ 0.99
VPS28-215ENST00000531924 NBPF1Q3BBV0 1214 aa21.24■□□□□ 0.99
VPS28-215ENST00000531924 ZRANB1Q9UGI0 708 aa21.24■□□□□ 0.99
VPS28-215ENST00000531924 CCDC61Q9Y6R9 512 aa21.24■□□□□ 0.99
VPS28-215ENST00000531924 PRDM11Q9NQV5 511 aa21.23■□□□□ 0.99
VPS28-215ENST00000531924 ARHGEF28Q8N1W1 1705 aaKnown RBP21.23■□□□□ 0.99
VPS28-215ENST00000531924 SRPK2P78362 688 aaKnown RBP21.22■□□□□ 0.99
VPS28-215ENST00000531924 TRPM3Q9HCF6 1732 aaPredicted RBP21.21■□□□□ 0.99
VPS28-215ENST00000531924 ATP7BP35670 1465 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms