RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 LRPPRCP42704 1394 aaKnown RBP23.4■■□□□ 1.34
CPSF1-205ENST00000531042 TMEM132EQ6IEE7 984 aa23.38■■□□□ 1.33
CPSF1-205ENST00000531042 KNDC1Q76NI1 1749 aa23.38■■□□□ 1.33
CPSF1-205ENST00000531042 ABCC11Q96J66 1382 aa23.38■■□□□ 1.33
CPSF1-205ENST00000531042 SOS2Q07890 1332 aaPredicted RBP23.37■■□□□ 1.33
CPSF1-205ENST00000531042 WAPLQ7Z5K2 1190 aa23.36■■□□□ 1.33
CPSF1-205ENST00000531042 AFF2P51816 1311 aa23.33■■□□□ 1.33
CPSF1-205ENST00000531042 YTHDC2Q9H6S0 1430 aaKnown RBP23.33■■□□□ 1.33
CPSF1-205ENST00000531042 NRXN1Q9ULB1 1477 aa23.33■■□□□ 1.33
CPSF1-205ENST00000531042 C14orf93Q9H972 538 aaKnown RBP23.33■■□□□ 1.33
CPSF1-205ENST00000531042 MYOM2P54296 1465 aa23.32■■□□□ 1.32
CPSF1-205ENST00000531042 PLEKHH1Q9ULM0 1364 aa23.32■■□□□ 1.32
CPSF1-205ENST00000531042 ESCO1Q5FWF5 840 aa23.32■■□□□ 1.32
CPSF1-205ENST00000531042 C8orf37Q96NL8 207 aa23.31■■□□□ 1.32
CPSF1-205ENST00000531042 RXRBP28702 533 aa23.3■■□□□ 1.32
CPSF1-205ENST00000531042 CFAP70Q5T0N1 1121 aa23.29■■□□□ 1.32
CPSF1-205ENST00000531042 SIRT1Q96EB6 747 aa23.29■■□□□ 1.32
CPSF1-205ENST00000531042 NPHP3Q7Z494 1330 aa23.29■■□□□ 1.32
CPSF1-205ENST00000531042 COL22A1Q8NFW1 1626 aaPredicted RBP23.27■■□□□ 1.32
CPSF1-205ENST00000531042 NUTM2FA1L443 756 aa23.27■■□□□ 1.32
CPSF1-205ENST00000531042 FMN2Q9NZ56 1722 aa23.27■■□□□ 1.32
CPSF1-205ENST00000531042 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.31
CPSF1-205ENST00000531042 PXDNQ92626 1479 aa23.26■■□□□ 1.31
CPSF1-205ENST00000531042 ADAMTS2O95450 1211 aa23.26■■□□□ 1.31
CPSF1-205ENST00000531042 CDK12Q9NYV4 1490 aaPredicted RBP23.25■■□□□ 1.31
CPSF1-205ENST00000531042 FOXO3O43524 673 aa23.25■■□□□ 1.31
CPSF1-205ENST00000531042 HRCP23327 699 aa23.24■■□□□ 1.31
CPSF1-205ENST00000531042 NGLY1Q96IV0 654 aa23.24■■□□□ 1.31
CPSF1-205ENST00000531042 QTRT2Q9H974 415 aaKnown RBP23.23■■□□□ 1.31
CPSF1-205ENST00000531042 XPCQ01831 940 aaPredicted RBP23.22■■□□□ 1.31
CPSF1-205ENST00000531042 KIF1AQ12756 1690 aa23.2■■□□□ 1.3
CPSF1-205ENST00000531042 RBM6P78332 1123 aaKnown RBP23.2■■□□□ 1.3
CPSF1-205ENST00000531042 PRAM1Q96QH2 718 aa23.19■■□□□ 1.3
CPSF1-205ENST00000531042 RGPD8O14715 1765 aaPredicted RBP23.19■■□□□ 1.3
CPSF1-205ENST00000531042 DLC1Q96QB1 1528 aa23.18■■□□□ 1.3
CPSF1-205ENST00000531042 UPF1Q92900 1129 aaKnown RBP eCLIP23.18■■□□□ 1.3
CPSF1-205ENST00000531042 ADGRB1O14514 1584 aa23.18■■□□□ 1.3
CPSF1-205ENST00000531042 SAFB2Q14151 953 aaKnown RBP eCLIP23.16■■□□□ 1.3
CPSF1-205ENST00000531042 FNBP4Q8N3X1 1017 aaPredicted RBP23.16■■□□□ 1.3
CPSF1-205ENST00000531042 DCAF11Q8TEB1 546 aa23.16■■□□□ 1.3
CPSF1-205ENST00000531042 USP21Q9UK80 565 aa23.16■■□□□ 1.3
CPSF1-205ENST00000531042 MARF1Q9Y4F3 1742 aaKnown RBP23.16■■□□□ 1.3
CPSF1-205ENST00000531042 RGS12O14924 1447 aa23.16■■□□□ 1.3
CPSF1-205ENST00000531042 KDM2AQ9Y2K7 1162 aa23.15■■□□□ 1.3
CPSF1-205ENST00000531042 STAC3Q96MF2 364 aa23.14■■□□□ 1.29
CPSF1-205ENST00000531042 POGKQ9P215 609 aa23.14■■□□□ 1.29
CPSF1-205ENST00000531042 SPATA31A3Q5VYP0 1347 aa23.13■■□□□ 1.29
CPSF1-205ENST00000531042 KRT28Q7Z3Y7 464 aa23.13■■□□□ 1.29
CPSF1-205ENST00000531042 PHF8Q9UPP1 1060 aa23.13■■□□□ 1.29
CPSF1-205ENST00000531042 TRPC5Q9UL62 973 aaPredicted RBP23.12■■□□□ 1.29
CPSF1-205ENST00000531042 TRAK1Q9UPV9 953 aa23.11■■□□□ 1.29
CPSF1-205ENST00000531042 ADGRB2O60241 1585 aa23.1■■□□□ 1.29
CPSF1-205ENST00000531042 ATRNO75882 1429 aa23.09■■□□□ 1.29
CPSF1-205ENST00000531042 ANKARQ7Z5J8 1434 aa23.08■■□□□ 1.29
CPSF1-205ENST00000531042 USP32Q8NFA0 1604 aa23.08■■□□□ 1.29
CPSF1-205ENST00000531042 BCL9LQ86UU0 1499 aa23.08■■□□□ 1.29
CPSF1-205ENST00000531042 PSME1Q06323 249 aa23.07■■□□□ 1.28
CPSF1-205ENST00000531042 TNS3Q68CZ2 1445 aa23.06■■□□□ 1.28
CPSF1-205ENST00000531042 HIRIP3Q9BW71 556 aaPredicted RBP23.05■■□□□ 1.28
CPSF1-205ENST00000531042 SBNO1A3KN83 1393 aa23.04■■□□□ 1.28
CPSF1-205ENST00000531042 MINK1Q8N4C8 1332 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-205ENST00000531042 PMFBP1Q8TBY8 1022 aa23.03■■□□□ 1.28
CPSF1-205ENST00000531042 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.02■■□□□ 1.28
CPSF1-205ENST00000531042 SLIT2O94813 1529 aa23.01■■□□□ 1.27
CPSF1-205ENST00000531042 EIF3AQ14152 1382 aaKnown RBP23.01■■□□□ 1.27
CPSF1-205ENST00000531042 ARHGEF28Q8N1W1 1705 aaKnown RBP23■■□□□ 1.27
CPSF1-205ENST00000531042 TULP4Q9NRJ4 1543 aa23■■□□□ 1.27
CPSF1-205ENST00000531042 WASLO00401 505 aaPredicted RBP23■■□□□ 1.27
CPSF1-205ENST00000531042 PRR36Q9H6K5 1346 aa23■■□□□ 1.27
CPSF1-205ENST00000531042 CABLES1Q8TDN4 633 aa22.99■■□□□ 1.27
CPSF1-205ENST00000531042 GJD4Q96KN9 370 aaPredicted RBP22.99■■□□□ 1.27
CPSF1-205ENST00000531042 ARHGEF10O15013 1369 aa22.99■■□□□ 1.27
CPSF1-205ENST00000531042 HAP1P54257 671 aaPredicted RBP22.98■■□□□ 1.27
CPSF1-205ENST00000531042 LMOD2Q6P5Q4 547 aa22.98■■□□□ 1.27
CPSF1-205ENST00000531042 UNC5CLQ8IV45 518 aa22.98■■□□□ 1.27
CPSF1-205ENST00000531042 ABCA3Q99758 1704 aa22.98■■□□□ 1.27
CPSF1-205ENST00000531042 ATAD2Q6PL18 1390 aa22.98■■□□□ 1.27
CPSF1-205ENST00000531042 TRPM3Q9HCF6 1732 aaPredicted RBP22.97■■□□□ 1.27
CPSF1-205ENST00000531042 KIAA1210Q9ULL0 1709 aa22.96■■□□□ 1.27
CPSF1-205ENST00000531042 PLEKHG5O94827 1062 aa22.95■■□□□ 1.26
CPSF1-205ENST00000531042 GPRASP1Q5JY77 1395 aa22.94■■□□□ 1.26
CPSF1-205ENST00000531042 GLI3P10071 1580 aa22.93■■□□□ 1.26
CPSF1-205ENST00000531042 PLCH1Q4KWH8 1693 aa22.93■■□□□ 1.26
CPSF1-205ENST00000531042 ALS2Q96Q42 1657 aa22.93■■□□□ 1.26
CPSF1-205ENST00000531042 RALGAPBQ86X10 1494 aa22.92■■□□□ 1.26
CPSF1-205ENST00000531042 NWD2Q9ULI1 1742 aa22.92■■□□□ 1.26
CPSF1-205ENST00000531042 EP400Q96L91 3159 aa22.91■■□□□ 1.26
CPSF1-205ENST00000531042 ITSN1Q15811 1721 aa22.91■■□□□ 1.26
CPSF1-205ENST00000531042 NGDNQ8NEJ9 315 aaKnown RBP22.9■■□□□ 1.26
CPSF1-205ENST00000531042 ATP7BP35670 1465 aa22.9■■□□□ 1.26
CPSF1-205ENST00000531042 NUDT16Q96DE0 195 aaKnown RBP22.89■■□□□ 1.25
CPSF1-205ENST00000531042 FAM83GA6ND36 823 aa22.88■■□□□ 1.25
CPSF1-205ENST00000531042 VPS72Q15906 364 aa22.88■■□□□ 1.25
CPSF1-205ENST00000531042 NBPF1Q3BBV0 1214 aa22.88■■□□□ 1.25
CPSF1-205ENST00000531042 CDK19Q9BWU1 502 aa22.87■■□□□ 1.25
CPSF1-205ENST00000531042 CRYBG1Q9Y4K1 1723 aa22.85■■□□□ 1.25
CPSF1-205ENST00000531042 PAK3O75914 559 aaPredicted RBP22.84■■□□□ 1.25
CPSF1-205ENST00000531042 BRWD3Q6RI45 1802 aa22.84■■□□□ 1.25
CPSF1-205ENST00000531042 TOPAZ1Q8N9V7 1692 aa22.83■■□□□ 1.24
CPSF1-205ENST00000531042 NRAPQ86VF7 1730 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms