RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 SMC5Q8IY18 1101 aa17.62■□□□□ 0.41
PCF11-204ENST00000530660 PMFBP1Q8TBY8 1022 aa17.62■□□□□ 0.41
PCF11-204ENST00000530660 CAVIN1Q6NZI2 390 aaKnown RBP17.62■□□□□ 0.41
PCF11-204ENST00000530660 KLHL40Q2TBA0 621 aa17.61■□□□□ 0.41
PCF11-204ENST00000530660 COL17A1Q9UMD9 1497 aaPredicted RBP17.61■□□□□ 0.41
PCF11-204ENST00000530660 RLBP1P12271 317 aa17.6■□□□□ 0.41
PCF11-204ENST00000530660 CEP170Q5SW79 1584 aa17.6■□□□□ 0.41
PCF11-204ENST00000530660 PRAG1Q86YV5 1406 aa17.6■□□□□ 0.41
PCF11-204ENST00000530660 DNTTIP2Q5QJE6 756 aaKnown RBP17.6■□□□□ 0.41
PCF11-204ENST00000530660 PRIM1P49642 420 aaKnown RBP17.59■□□□□ 0.41
PCF11-204ENST00000530660 CIZ1Q9ULV3 898 aaPredicted RBP17.59■□□□□ 0.41
PCF11-204ENST00000530660 CD2BP2O95400 341 aaKnown RBP17.59■□□□□ 0.41
PCF11-204ENST00000530660 ZSCAN23Q3MJ62 389 aa17.59■□□□□ 0.41
PCF11-204ENST00000530660 MYRIPQ8NFW9 859 aa17.59■□□□□ 0.41
PCF11-204ENST00000530660 CROCC2H7BZ55 1655 aa17.58■□□□□ 0.41
PCF11-204ENST00000530660 AK9Q5TCS8 1911 aa17.58■□□□□ 0.41
PCF11-204ENST00000530660 PPP2R1AP30153 589 aa17.58■□□□□ 0.41
PCF11-204ENST00000530660 KDM5DQ9BY66 1539 aa17.58■□□□□ 0.41
PCF11-204ENST00000530660 TROQ12816 1431 aaPredicted RBP17.58■□□□□ 0.4
PCF11-204ENST00000530660 TRPM1Q7Z4N2 1603 aa17.58■□□□□ 0.4
PCF11-204ENST00000530660 GOLGA6L22H0YM25 854 aa17.57■□□□□ 0.4
PCF11-204ENST00000530660 PTMSP20962 102 aa17.57■□□□□ 0.4
PCF11-204ENST00000530660 ZNF445P59923 1031 aa17.57■□□□□ 0.4
PCF11-204ENST00000530660 MPNDQ8N594 471 aa17.57■□□□□ 0.4
PCF11-204ENST00000530660 IBTKQ9P2D0 1353 aaPredicted RBP17.57■□□□□ 0.4
PCF11-204ENST00000530660 PDS5BQ9NTI5 1447 aa17.56■□□□□ 0.4
PCF11-204ENST00000530660 ERBINQ96RT1 1412 aa17.56■□□□□ 0.4
PCF11-204ENST00000530660 BAG4O95429 457 aaKnown RBP17.56■□□□□ 0.4
PCF11-204ENST00000530660 BCL2L13Q9BXK5 485 aa17.56■□□□□ 0.4
PCF11-204ENST00000530660 RAPGEF6Q8TEU7 1601 aa17.55■□□□□ 0.4
PCF11-204ENST00000530660 SNX21Q969T3 373 aa17.55■□□□□ 0.4
PCF11-204ENST00000530660 E9PSI1 815 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 CDK11BP21127 795 aaKnown RBP17.54■□□□□ 0.4
PCF11-204ENST00000530660 TMF1P82094 1093 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 MCTP1Q6DN14 999 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 RWDD1Q9H446 243 aaPredicted RBP17.54■□□□□ 0.4
PCF11-204ENST00000530660 ZMYM3Q14202 1370 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 DISP1Q96F81 1524 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 ITSN2Q9NZM3 1697 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 MCM5P33992 734 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 C9orf84Q5VXU9 1444 aa17.54■□□□□ 0.4
PCF11-204ENST00000530660 RBM27Q9P2N5 1060 aaKnown RBP17.54■□□□□ 0.4
PCF11-204ENST00000530660 TARBP1Q13395 1621 aaKnown RBP17.53■□□□□ 0.4
PCF11-204ENST00000530660 RBM42Q9BTD8 480 aaKnown RBP17.52■□□□□ 0.4
PCF11-204ENST00000530660 CCDC39Q9UFE4 941 aa17.52■□□□□ 0.4
PCF11-204ENST00000530660 KNSTRNQ9Y448 316 aa17.52■□□□□ 0.4
PCF11-204ENST00000530660 KIAA0556O60303 1618 aa17.52■□□□□ 0.39
PCF11-204ENST00000530660 GAS2L2Q8NHY3 880 aa17.52■□□□□ 0.39
PCF11-204ENST00000530660 PBRM1Q86U86 1689 aa17.52■□□□□ 0.39
PCF11-204ENST00000530660 RNF214Q8ND24 703 aa17.51■□□□□ 0.39
PCF11-204ENST00000530660 GPRASP1Q5JY77 1395 aa17.51■□□□□ 0.39
PCF11-204ENST00000530660 ZNF771Q7L3S4 317 aaPredicted RBP17.51■□□□□ 0.39
PCF11-204ENST00000530660 CCDC144AA2RUR9 1427 aa17.5■□□□□ 0.39
PCF11-204ENST00000530660 ADAMTS12P58397 1594 aa17.5■□□□□ 0.39
PCF11-204ENST00000530660 PTMAP06454 111 aaKnown RBP17.5■□□□□ 0.39
PCF11-204ENST00000530660 TSPY4P0CV99 314 aa17.5■□□□□ 0.39
PCF11-204ENST00000530660 TSPY10P0CW01 314 aa17.5■□□□□ 0.39
PCF11-204ENST00000530660 U2AF2P26368 475 aaKnown RBP eCLIP17.5■□□□□ 0.39
PCF11-204ENST00000530660 RBM25P49756 843 aaKnown RBP17.5■□□□□ 0.39
PCF11-204ENST00000530660 MAGI2Q86UL8 1455 aa17.5■□□□□ 0.39
PCF11-204ENST00000530660 KIAA2012Q0VF49 1180 aa17.5■□□□□ 0.39
PCF11-204ENST00000530660 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.5■□□□□ 0.39
PCF11-204ENST00000530660 C17orf53Q8N3J3 647 aaPredicted RBP17.49■□□□□ 0.39
PCF11-204ENST00000530660 CHMP4AQ9BY43 222 aa17.49■□□□□ 0.39
PCF11-204ENST00000530660 KIF2CQ99661 725 aa17.48■□□□□ 0.39
PCF11-204ENST00000530660 PTPRGP23470 1445 aa17.48■□□□□ 0.39
PCF11-204ENST00000530660 SCAPERQ9BY12 1400 aa17.48■□□□□ 0.39
PCF11-204ENST00000530660 PRDM15P57071 1507 aaPredicted RBP17.48■□□□□ 0.39
PCF11-204ENST00000530660 HNRNPMP52272 730 aaKnown RBP eCLIP17.48■□□□□ 0.39
PCF11-204ENST00000530660 BCL2L12Q9HB09 334 aa17.48■□□□□ 0.39
PCF11-204ENST00000530660 A2MP01023 1474 aa17.47■□□□□ 0.39
PCF11-204ENST00000530660 IRX5P78411 483 aaPredicted RBP17.47■□□□□ 0.39
PCF11-204ENST00000530660 EIF4G3O43432 1585 aaKnown RBP17.47■□□□□ 0.39
PCF11-204ENST00000530660 TAF3Q5VWG9 929 aa17.47■□□□□ 0.39
PCF11-204ENST00000530660 PDCL2Q8N4E4 241 aa17.47■□□□□ 0.39
PCF11-204ENST00000530660 LMBRD1Q9NUN5 540 aa17.47■□□□□ 0.39
PCF11-204ENST00000530660 K7ELQ4 463 aaPredicted RBP17.47■□□□□ 0.39
PCF11-204ENST00000530660 KIF3AQ9Y496 699 aa17.47■□□□□ 0.39
PCF11-204ENST00000530660 PLB1Q6P1J6 1458 aa17.46■□□□□ 0.39
PCF11-204ENST00000530660 SYCE3A1L190 88 aa17.46■□□□□ 0.39
PCF11-204ENST00000530660 KCNJ4P48050 445 aa17.46■□□□□ 0.39
PCF11-204ENST00000530660 RARSP54136 660 aaKnown RBP17.46■□□□□ 0.39
PCF11-204ENST00000530660 NINLQ9Y2I6 1382 aa17.46■□□□□ 0.39
PCF11-204ENST00000530660 FTSJ3Q8IY81 847 aaKnown RBP17.46■□□□□ 0.38
PCF11-204ENST00000530660 NEUROD2Q15784 382 aa17.45■□□□□ 0.38
PCF11-204ENST00000530660 CHAMP1Q96JM3 812 aa17.45■□□□□ 0.38
PCF11-204ENST00000530660 PRIMPOLQ96LW4 560 aa17.45■□□□□ 0.38
PCF11-204ENST00000530660 CDC42BPAQ5VT25 1732 aa17.45■□□□□ 0.38
PCF11-204ENST00000530660 PKP1Q13835 747 aa17.45■□□□□ 0.38
PCF11-204ENST00000530660 RSPH4AQ5TD94 716 aa17.45■□□□□ 0.38
PCF11-204ENST00000530660 FAM135AQ9P2D6 1515 aa17.44■□□□□ 0.38
PCF11-204ENST00000530660 CLEC17AQ6ZS10 378 aa17.44■□□□□ 0.38
PCF11-204ENST00000530660 PRPF40AO75400 957 aaKnown RBP17.44■□□□□ 0.38
PCF11-204ENST00000530660 GTF2F1P35269 517 aaKnown RBP eCLIP17.44■□□□□ 0.384e-14■■■■□ 21
PCF11-204ENST00000530660 GPT2Q8TD30 523 aa17.44■□□□□ 0.38
PCF11-204ENST00000530660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.44■□□□□ 0.383e-8■■■■□ 26.5
PCF11-204ENST00000530660 WDR7Q9Y4E6 1490 aa17.44■□□□□ 0.38
PCF11-204ENST00000530660 HMGN5P82970 282 aaKnown RBP17.44■□□□□ 0.38
PCF11-204ENST00000530660 CLASP1Q7Z460 1538 aa17.43■□□□□ 0.38
PCF11-204ENST00000530660 TMEM63CQ9P1W3 806 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms