RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PRKRIP1Q9H875 184 aaPredicted RBP28.83■■■□□ 2.21
VPS28-208ENST00000527797 NPHP4O75161 1426 aaPredicted RBP28.83■■■□□ 2.2
VPS28-208ENST00000527797 CCER2I3L3R5 266 aa28.82■■■□□ 2.2
VPS28-208ENST00000527797 PER1O15534 1290 aaPredicted RBP28.81■■■□□ 2.2
VPS28-208ENST00000527797 ROBO2Q9HCK4 1378 aa28.81■■■□□ 2.2
VPS28-208ENST00000527797 NCKAP5LQ9HCH0 1330 aa28.8■■■□□ 2.2
VPS28-208ENST00000527797 SRPK2P78362 688 aaKnown RBP28.8■■■□□ 2.2
VPS28-208ENST00000527797 CABP2Q9NPB3 220 aa28.8■■■□□ 2.2
VPS28-208ENST00000527797 CDK19Q9BWU1 502 aa28.78■■■□□ 2.2
VPS28-208ENST00000527797 TMC1Q8TDI8 760 aa28.77■■■□□ 2.2
VPS28-208ENST00000527797 MYOM1P52179 1685 aa28.77■■■□□ 2.2
VPS28-208ENST00000527797 PTCH1Q13635 1447 aa28.75■■■□□ 2.19
VPS28-208ENST00000527797 ATAD2Q6PL18 1390 aa28.75■■■□□ 2.19
VPS28-208ENST00000527797 KNSTRNQ9Y448 316 aa28.74■■■□□ 2.19
VPS28-208ENST00000527797 SLC12A5Q9H2X9 1139 aa28.73■■■□□ 2.19
VPS28-208ENST00000527797 WASLO00401 505 aaPredicted RBP28.72■■■□□ 2.19
VPS28-208ENST00000527797 CNGB1Q14028 1251 aaPredicted RBP28.72■■■□□ 2.19
VPS28-208ENST00000527797 NINLQ9Y2I6 1382 aa28.72■■■□□ 2.19
VPS28-208ENST00000527797 KTN1Q86UP2 1357 aaKnown RBP28.71■■■□□ 2.19
VPS28-208ENST00000527797 KCNA6P17658 529 aa28.7■■■□□ 2.19
VPS28-208ENST00000527797 XRN1Q8IZH2 1706 aaKnown RBP28.7■■■□□ 2.19
VPS28-208ENST00000527797 HSPA2P54652 639 aa28.69■■■□□ 2.18
VPS28-208ENST00000527797 RALBP1Q15311 655 aa28.69■■■□□ 2.18
VPS28-208ENST00000527797 LMTK3Q96Q04 1460 aa28.67■■■□□ 2.18
VPS28-208ENST00000527797 CARD14Q9BXL6 1004 aa28.65■■■□□ 2.18
VPS28-208ENST00000527797 CC2D1BQ5T0F9 858 aaKnown RBP28.64■■■□□ 2.18
VPS28-208ENST00000527797 ANKRD36BQ8N2N9 1353 aa28.64■■■□□ 2.17
VPS28-208ENST00000527797 ADGRB2O60241 1585 aa28.63■■■□□ 2.17
VPS28-208ENST00000527797 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.63■■■□□ 2.17
VPS28-208ENST00000527797 AMER1Q5JTC6 1135 aaPredicted RBP28.62■■■□□ 2.17
VPS28-208ENST00000527797 CHD2O14647 1828 aaKnown RBP28.62■■■□□ 2.17
VPS28-208ENST00000527797 PARD3Q8TEW0 1356 aa28.61■■■□□ 2.17
VPS28-208ENST00000527797 NPC1L1Q9UHC9 1359 aa28.61■■■□□ 2.17
VPS28-208ENST00000527797 TERF2IPQ9NYB0 399 aa28.6■■■□□ 2.17
VPS28-208ENST00000527797 NUDT16Q96DE0 195 aaKnown RBP28.59■■■□□ 2.17
VPS28-208ENST00000527797 CABP1Q9NZU7 370 aa28.59■■■□□ 2.17
VPS28-208ENST00000527797 MYBBP1AQ9BQG0 1328 aaKnown RBP28.58■■■□□ 2.17
VPS28-208ENST00000527797 NSD3Q9BZ95 1437 aa28.58■■■□□ 2.17
VPS28-208ENST00000527797 YTHDC1Q96MU7 727 aaKnown RBP28.58■■■□□ 2.17
VPS28-208ENST00000527797 HDGFL2Q7Z4V5 671 aaPredicted RBP28.57■■■□□ 2.16
VPS28-208ENST00000527797 CCDC61Q9Y6R9 512 aa28.56■■■□□ 2.16
VPS28-208ENST00000527797 MRS2Q9HD23 443 aa28.55■■■□□ 2.16
VPS28-208ENST00000527797 A0A1W2PP64 1363 aa28.54■■■□□ 2.16
VPS28-208ENST00000527797 CCDC184Q52MB2 194 aa28.54■■■□□ 2.16
VPS28-208ENST00000527797 PPIP5K1Q6PFW1 1433 aa28.53■■■□□ 2.16
VPS28-208ENST00000527797 NWD1Q149M9 1564 aa28.53■■■□□ 2.16
VPS28-208ENST00000527797 PRR36Q9H6K5 1346 aa28.52■■■□□ 2.16
VPS28-208ENST00000527797 ATP7BP35670 1465 aa28.51■■■□□ 2.15
VPS28-208ENST00000527797 CD163L1Q9NR16 1453 aa28.51■■■□□ 2.15
VPS28-208ENST00000527797 CGNL1Q0VF96 1302 aa28.51■■■□□ 2.15
VPS28-208ENST00000527797 NLRP13Q86W25 1043 aa28.49■■■□□ 2.15
VPS28-208ENST00000527797 BRD4O60885 1362 aaPredicted RBP28.48■■■□□ 2.15
VPS28-208ENST00000527797 USP32Q8NFA0 1604 aa28.47■■■□□ 2.15
VPS28-208ENST00000527797 PROSER2Q86WR7 435 aaPredicted RBP28.47■■■□□ 2.15
VPS28-208ENST00000527797 NUTM2FA1L443 756 aa28.46■■■□□ 2.15
VPS28-208ENST00000527797 NKTRP30414 1462 aaKnown RBP28.45■■■□□ 2.15
VPS28-208ENST00000527797 RBM33Q96EV2 1170 aaKnown RBP28.45■■■□□ 2.14
VPS28-208ENST00000527797 NSD2O96028 1365 aa28.44■■■□□ 2.14
VPS28-208ENST00000527797 CPSF1Q10570 1443 aaKnown RBP28.44■■■□□ 2.14
VPS28-208ENST00000527797 ADGRL3Q9HAR2 1447 aa28.44■■■□□ 2.14
VPS28-208ENST00000527797 PLEKHG3A1L390 1219 aa28.43■■■□□ 2.14
VPS28-208ENST00000527797 C14orf37Q86TY3 774 aa28.43■■■□□ 2.14
VPS28-208ENST00000527797 STRCQ7RTU9 1775 aa28.43■■■□□ 2.14
VPS28-208ENST00000527797 PPP2R1AP30153 589 aa28.42■■■□□ 2.14
VPS28-208ENST00000527797 ZNF692Q9BU19 519 aaPredicted RBP28.42■■■□□ 2.14
VPS28-208ENST00000527797 ANKARQ7Z5J8 1434 aa28.42■■■□□ 2.14
VPS28-208ENST00000527797 CDC42BPGQ6DT37 1551 aa28.42■■■□□ 2.14
VPS28-208ENST00000527797 MORC1Q86VD1 984 aa28.41■■■□□ 2.14
VPS28-208ENST00000527797 NALCNQ8IZF0 1738 aa28.39■■■□□ 2.13
VPS28-208ENST00000527797 TOPAZ1Q8N9V7 1692 aa28.38■■■□□ 2.13
VPS28-208ENST00000527797 FAM9BQ8IZU0 186 aa28.37■■■□□ 2.13
VPS28-208ENST00000527797 EDC4Q6P2E9 1401 aaKnown RBP28.37■■■□□ 2.13
VPS28-208ENST00000527797 ACEP12821 1306 aa28.37■■■□□ 2.13
VPS28-208ENST00000527797 FMN2Q9NZ56 1722 aa28.36■■■□□ 2.13
VPS28-208ENST00000527797 FYB1O15117 783 aa28.36■■■□□ 2.13
VPS28-208ENST00000527797 DMRT2Q9Y5R5 561 aa28.35■■■□□ 2.13
VPS28-208ENST00000527797 NCOA3Q9Y6Q9 1424 aa28.34■■■□□ 2.13
VPS28-208ENST00000527797 CENPBP07199 599 aaPredicted RBP28.34■■■□□ 2.13
VPS28-208ENST00000527797 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.33■■■□□ 2.13
VPS28-208ENST00000527797 PNISRQ8TF01 805 aaKnown RBP28.33■■■□□ 2.13
VPS28-208ENST00000527797 GGNBP2Q9H3C7 697 aa28.33■■■□□ 2.13
VPS28-208ENST00000527797 C19orf44Q9H6X5 657 aa28.32■■■□□ 2.12
VPS28-208ENST00000527797 PMFBP1Q8TBY8 1022 aa28.32■■■□□ 2.12
VPS28-208ENST00000527797 TMEM94Q12767 1356 aa28.32■■■□□ 2.12
VPS28-208ENST00000527797 ITSN1Q15811 1721 aa28.31■■■□□ 2.12
VPS28-208ENST00000527797 NGDNQ8NEJ9 315 aaKnown RBP28.3■■■□□ 2.12
VPS28-208ENST00000527797 POLR3AO14802 1390 aaPredicted RBP28.29■■■□□ 2.12
VPS28-208ENST00000527797 STRCP1A6NGW2 1772 aa28.29■■■□□ 2.12
VPS28-208ENST00000527797 AKAP12Q02952 1782 aa28.29■■■□□ 2.12
VPS28-208ENST00000527797 TNNT2P45379 298 aaPredicted RBP28.29■■■□□ 2.12
VPS28-208ENST00000527797 MON2Q7Z3U7 1717 aa28.27■■■□□ 2.12
VPS28-208ENST00000527797 USP6P35125 1406 aa28.27■■■□□ 2.12
VPS28-208ENST00000527797 PHF8Q9UPP1 1060 aa28.25■■■□□ 2.11
VPS28-208ENST00000527797 ZNF335Q9H4Z2 1342 aaPredicted RBP28.25■■■□□ 2.11
VPS28-208ENST00000527797 TTC21BQ7Z4L5 1316 aa28.24■■■□□ 2.11
VPS28-208ENST00000527797 NME9Q86XW9 330 aa28.24■■■□□ 2.11
VPS28-208ENST00000527797 RGPD8O14715 1765 aaPredicted RBP28.24■■■□□ 2.11
VPS28-208ENST00000527797 KIF20BQ96Q89 1820 aa28.22■■■□□ 2.11
VPS28-208ENST00000527797 ATF3P18847 181 aa28.22■■■□□ 2.11
VPS28-208ENST00000527797 ESCO1Q5FWF5 840 aa28.22■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms