RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 CDCA8Q53HL2 280 aa20.29■□□□□ 0.84
SCLT1-208ENST00000506368 UNC13BO14795 1591 aa20.28■□□□□ 0.84
SCLT1-208ENST00000506368 XRCC6P12956 609 aaKnown RBP eCLIP20.28■□□□□ 0.845e-6■■□□□ 13.3
SCLT1-208ENST00000506368 PMFBP1Q8TBY8 1022 aa20.28■□□□□ 0.84
SCLT1-208ENST00000506368 NAP1L5Q96NT1 182 aaPredicted RBP20.28■□□□□ 0.84
SCLT1-208ENST00000506368 TBC1D32Q96NH3 1257 aa20.27■□□□□ 0.84
SCLT1-208ENST00000506368 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.27■□□□□ 0.84
SCLT1-208ENST00000506368 KNSTRNQ9Y448 316 aa20.27■□□□□ 0.84
SCLT1-208ENST00000506368 AGLP35573 1532 aa20.27■□□□□ 0.83
SCLT1-208ENST00000506368 ASXL1Q8IXJ9 1541 aa20.27■□□□□ 0.83
SCLT1-208ENST00000506368 CLUAP1Q96AJ1 413 aa20.26■□□□□ 0.83
SCLT1-208ENST00000506368 MCM4P33991 863 aa20.24■□□□□ 0.83
SCLT1-208ENST00000506368 MROH1Q8NDA8 1641 aa20.24■□□□□ 0.83
SCLT1-208ENST00000506368 SLKQ9H2G2 1235 aaPredicted RBP20.23■□□□□ 0.83
SCLT1-208ENST00000506368 NBPF1Q3BBV0 1214 aa20.22■□□□□ 0.83
SCLT1-208ENST00000506368 CHMP5Q9NZZ3 219 aa20.22■□□□□ 0.83
SCLT1-208ENST00000506368 DDX11L8A8MPP1 907 aa20.22■□□□□ 0.83
SCLT1-208ENST00000506368 IGHDP01880 384 aa20.22■□□□□ 0.83
SCLT1-208ENST00000506368 IQGAP1P46940 1657 aa20.21■□□□□ 0.83
SCLT1-208ENST00000506368 IQGAP3Q86VI3 1631 aa20.21■□□□□ 0.83
SCLT1-208ENST00000506368 AMER1Q5JTC6 1135 aaPredicted RBP20.2■□□□□ 0.82
SCLT1-208ENST00000506368 TBC1D2Q9BYX2 928 aa20.2■□□□□ 0.82
SCLT1-208ENST00000506368 DEPDC5O75140 1603 aa20.2■□□□□ 0.82
SCLT1-208ENST00000506368 PTMSP20962 102 aa20.2■□□□□ 0.82
SCLT1-208ENST00000506368 TPM2P07951 284 aa20.19■□□□□ 0.82
SCLT1-208ENST00000506368 STAC3Q96MF2 364 aa20.19■□□□□ 0.82
SCLT1-208ENST00000506368 MADDQ8WXG6 1647 aa20.19■□□□□ 0.82
SCLT1-208ENST00000506368 SLC24A1O60721 1099 aa20.18■□□□□ 0.82
SCLT1-208ENST00000506368 CENPJQ9HC77 1338 aaPredicted RBP20.18■□□□□ 0.82
SCLT1-208ENST00000506368 MYH16Q9H6N6 1097 aa20.18■□□□□ 0.82
SCLT1-208ENST00000506368 CEP152O94986 1710 aa20.18■□□□□ 0.82
SCLT1-208ENST00000506368 FER1L4A9Z1Z3 1794 aa20.18■□□□□ 0.82
SCLT1-208ENST00000506368 ADAMTSL3P82987 1691 aa20.17■□□□□ 0.82
SCLT1-208ENST00000506368 KDM4FA0A1W2PPD8 638 aa20.17■□□□□ 0.82
SCLT1-208ENST00000506368 SEC24BO95487 1268 aa20.17■□□□□ 0.82
SCLT1-208ENST00000506368 PLPPR3Q6T4P5 718 aa20.17■□□□□ 0.82
SCLT1-208ENST00000506368 ZMYND15Q9H091 742 aa20.17■□□□□ 0.82
SCLT1-208ENST00000506368 CLTCQ00610 1675 aaKnown RBP20.17■□□□□ 0.82
SCLT1-208ENST00000506368 PLA2R1Q13018 1463 aa20.17■□□□□ 0.82
SCLT1-208ENST00000506368 VSIG10Q8N0Z9 540 aa20.17■□□□□ 0.82
SCLT1-208ENST00000506368 TRAK2O60296 914 aa20.15■□□□□ 0.82
SCLT1-208ENST00000506368 RIMS1Q86UR5 1692 aaKnown RBP20.14■□□□□ 0.82
SCLT1-208ENST00000506368 ESPNB1AK53 854 aa20.14■□□□□ 0.81
SCLT1-208ENST00000506368 BCAR3O75815 825 aa20.14■□□□□ 0.81
SCLT1-208ENST00000506368 GRPEL1Q9HAV7 217 aa20.13■□□□□ 0.81
SCLT1-208ENST00000506368 CFAP65Q6ZU64 1925 aaKnown RBP20.13■□□□□ 0.81
SCLT1-208ENST00000506368 CANXP27824 592 aaKnown RBP20.12■□□□□ 0.81
SCLT1-208ENST00000506368 ABCC3O15438 1527 aa20.12■□□□□ 0.81
SCLT1-208ENST00000506368 CEBPAP49715 358 aaPredicted RBP20.12■□□□□ 0.81
SCLT1-208ENST00000506368 RWDD1Q9H446 243 aaPredicted RBP20.12■□□□□ 0.81
SCLT1-208ENST00000506368 VWDEQ8N2E2 1590 aa20.11■□□□□ 0.81
SCLT1-208ENST00000506368 SKOR2Q2VWA4 1001 aaPredicted RBP20.11■□□□□ 0.81
SCLT1-208ENST00000506368 MYOM1P52179 1685 aa20.1■□□□□ 0.81
SCLT1-208ENST00000506368 TRIM44Q96DX7 344 aaPredicted RBP20.1■□□□□ 0.81
SCLT1-208ENST00000506368 ESF1Q9H501 851 aaKnown RBP20.1■□□□□ 0.81
SCLT1-208ENST00000506368 SCAF11Q99590 1463 aaKnown RBP20.09■□□□□ 0.81
SCLT1-208ENST00000506368 APAF1O14727 1248 aa20.09■□□□□ 0.81
SCLT1-208ENST00000506368 PDCL3Q9H2J4 239 aa20.09■□□□□ 0.81
SCLT1-208ENST00000506368 NCBP3Q53F19 620 aaKnown RBP20.09■□□□□ 0.81
SCLT1-208ENST00000506368 CIZ1Q9ULV3 898 aaPredicted RBP20.09■□□□□ 0.81
SCLT1-208ENST00000506368 KANK1Q14678 1352 aa20.08■□□□□ 0.81
SCLT1-208ENST00000506368 KDM5AP29375 1690 aaKnown RBP20.08■□□□□ 0.81
SCLT1-208ENST00000506368 NCOA3Q9Y6Q9 1424 aa20.08■□□□□ 0.81
SCLT1-208ENST00000506368 RGL3Q3MIN7 710 aa20.08■□□□□ 0.81
SCLT1-208ENST00000506368 TERF1P54274 439 aa20.07■□□□□ 0.8
SCLT1-208ENST00000506368 PANK2Q9BZ23 570 aa20.07■□□□□ 0.8
SCLT1-208ENST00000506368 CAMSAP1Q5T5Y3 1602 aa20.07■□□□□ 0.8
SCLT1-208ENST00000506368 SPINK5Q9NQ38 1064 aaPredicted RBP20.07■□□□□ 0.8
SCLT1-208ENST00000506368 COG6Q9Y2V7 657 aa20.06■□□□□ 0.8
SCLT1-208ENST00000506368 POLR3AO14802 1390 aaPredicted RBP20.06■□□□□ 0.8
SCLT1-208ENST00000506368 C3P01024 1663 aa20.06■□□□□ 0.8
SCLT1-208ENST00000506368 ZC3H13Q5T200 1668 aaKnown RBP20.06■□□□□ 0.8
SCLT1-208ENST00000506368 KIAA1210Q9ULL0 1709 aa20.05■□□□□ 0.8
SCLT1-208ENST00000506368 HSCBQ8IWL3 235 aa20.05■□□□□ 0.8
SCLT1-208ENST00000506368 C22orf23Q9BZE7 217 aa20.05■□□□□ 0.8
SCLT1-208ENST00000506368 PDZRN3Q9UPQ7 1066 aa20.05■□□□□ 0.8
SCLT1-208ENST00000506368 FBXO31Q5XUX0 539 aaPredicted RBP20.04■□□□□ 0.8
SCLT1-208ENST00000506368 PPP6R1Q9UPN7 881 aa20.04■□□□□ 0.8
SCLT1-208ENST00000506368 SPHKAPQ2M3C7 1700 aa20.03■□□□□ 0.8
SCLT1-208ENST00000506368 GBP4Q96PP9 640 aa20.03■□□□□ 0.8
SCLT1-208ENST00000506368 PTPRMP28827 1452 aa20.03■□□□□ 0.8
SCLT1-208ENST00000506368 TET3O43151 1660 aa20.03■□□□□ 0.8
SCLT1-208ENST00000506368 SNX21Q969T3 373 aa20.03■□□□□ 0.8
SCLT1-208ENST00000506368 EFCAB6Q5THR3 1501 aa20.02■□□□□ 0.8
SCLT1-208ENST00000506368 CCDC146Q8IYE0 955 aa20.02■□□□□ 0.8
SCLT1-208ENST00000506368 PANK1Q8TE04 598 aa20.02■□□□□ 0.8
SCLT1-208ENST00000506368 MROH2AA6NES4 1674 aa20.02■□□□□ 0.8
SCLT1-208ENST00000506368 NPATQ14207 1427 aa20.02■□□□□ 0.8
SCLT1-208ENST00000506368 LMTK2Q8IWU2 1503 aa20.01■□□□□ 0.79
SCLT1-208ENST00000506368 WWC1Q8IX03 1113 aa20.01■□□□□ 0.79
SCLT1-208ENST00000506368 GZF1Q9H116 711 aaPredicted RBP20.01■□□□□ 0.79
SCLT1-208ENST00000506368 RARSP54136 660 aaKnown RBP20■□□□□ 0.79
SCLT1-208ENST00000506368 CCDC173Q0VFZ6 552 aa20■□□□□ 0.79
SCLT1-208ENST00000506368 WDR63Q8IWG1 891 aa20■□□□□ 0.79
SCLT1-208ENST00000506368 MAP7D2Q96T17 732 aa20■□□□□ 0.79
SCLT1-208ENST00000506368 IBTKQ9P2D0 1353 aaPredicted RBP20■□□□□ 0.79
SCLT1-208ENST00000506368 DDIT3P35638 169 aa19.99■□□□□ 0.79
SCLT1-208ENST00000506368 ZNF692Q9BU19 519 aaPredicted RBP19.99■□□□□ 0.79
SCLT1-208ENST00000506368 CT47B1P0C2W7 299 aaPredicted RBP19.98■□□□□ 0.79
SCLT1-208ENST00000506368 NEURL4Q96JN8 1562 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms