RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 TMEM2Q9UHN6 1383 aa28.61■■■□□ 2.17
UBE2D3-216ENST00000503742 NINLQ9Y2I6 1382 aa28.61■■■□□ 2.17
UBE2D3-216ENST00000503742 HDGFP51858 240 aaKnown RBP28.61■■■□□ 2.17
UBE2D3-216ENST00000503742 NUDCQ9Y266 331 aa28.61■■■□□ 2.17
UBE2D3-216ENST00000503742 C3P01024 1663 aa28.61■■■□□ 2.17
UBE2D3-216ENST00000503742 ABCC11Q96J66 1382 aa28.6■■■□□ 2.17
UBE2D3-216ENST00000503742 FER1L4A9Z1Z3 1794 aa28.59■■■□□ 2.17
UBE2D3-216ENST00000503742 MINK1Q8N4C8 1332 aaPredicted RBP28.58■■■□□ 2.17
UBE2D3-216ENST00000503742 ATAD2Q6PL18 1390 aa28.57■■■□□ 2.16
UBE2D3-216ENST00000503742 SENP3-EIF4A1A0A087X0R7 540 aa28.57■■■□□ 2.16
UBE2D3-216ENST00000503742 CEBPAP49715 358 aaPredicted RBP28.55■■■□□ 2.16
UBE2D3-216ENST00000503742 ADAMTS8Q9UP79 889 aa28.55■■■□□ 2.16
UBE2D3-216ENST00000503742 METP08581 1390 aa28.55■■■□□ 2.16
UBE2D3-216ENST00000503742 SRPK2P78362 688 aaKnown RBP28.55■■■□□ 2.16
UBE2D3-216ENST00000503742 KNDC1Q76NI1 1749 aa28.53■■■□□ 2.16
UBE2D3-216ENST00000503742 CGNL1Q0VF96 1302 aa28.53■■■□□ 2.16
UBE2D3-216ENST00000503742 BCANQ96GW7 911 aa28.53■■■□□ 2.16
UBE2D3-216ENST00000503742 WDR43Q15061 677 aaKnown RBP eCLIP28.51■■■□□ 2.15
UBE2D3-216ENST00000503742 NSD2O96028 1365 aa28.51■■■□□ 2.15
UBE2D3-216ENST00000503742 PLEKHH1Q9ULM0 1364 aa28.51■■■□□ 2.15
UBE2D3-216ENST00000503742 TECPR2O15040 1411 aa28.51■■■□□ 2.15
UBE2D3-216ENST00000503742 PDE3BQ13370 1112 aa28.5■■■□□ 2.15
UBE2D3-216ENST00000503742 CDK19Q9BWU1 502 aa28.5■■■□□ 2.15
UBE2D3-216ENST00000503742 A0A1W2PP64 1363 aa28.49■■■□□ 2.15
UBE2D3-216ENST00000503742 WAPLQ7Z5K2 1190 aa28.49■■■□□ 2.15
UBE2D3-216ENST00000503742 MORC1Q86VD1 984 aa28.49■■■□□ 2.15
UBE2D3-216ENST00000503742 SIRT1Q96EB6 747 aa28.48■■■□□ 2.15
UBE2D3-216ENST00000503742 POLR3AO14802 1390 aaPredicted RBP28.48■■■□□ 2.15
UBE2D3-216ENST00000503742 CD163L1Q9NR16 1453 aa28.48■■■□□ 2.15
UBE2D3-216ENST00000503742 ADAMTS13Q76LX8 1427 aa28.47■■■□□ 2.15
UBE2D3-216ENST00000503742 ERICH6BQ5W0A0 696 aa28.47■■■□□ 2.15
UBE2D3-216ENST00000503742 FAM135BQ49AJ0 1406 aa28.46■■■□□ 2.15
UBE2D3-216ENST00000503742 PLEKHG1Q9ULL1 1385 aa28.46■■■□□ 2.15
UBE2D3-216ENST00000503742 CPS1P31327 1500 aa28.46■■■□□ 2.15
UBE2D3-216ENST00000503742 RNF123Q5XPI4 1314 aa28.45■■■□□ 2.15
UBE2D3-216ENST00000503742 SLIT1O75093 1534 aa28.45■■■□□ 2.14
UBE2D3-216ENST00000503742 LTKP29376 864 aa28.44■■■□□ 2.14
UBE2D3-216ENST00000503742 ARHGAP23Q9P227 1491 aa28.44■■■□□ 2.14
UBE2D3-216ENST00000503742 SALL2Q9Y467 1007 aaPredicted RBP28.44■■■□□ 2.14
UBE2D3-216ENST00000503742 IRX6P78412 446 aaPredicted RBP28.43■■■□□ 2.14
UBE2D3-216ENST00000503742 TERF2IPQ9NYB0 399 aa28.42■■■□□ 2.14
UBE2D3-216ENST00000503742 MED14O60244 1454 aa28.41■■■□□ 2.14
UBE2D3-216ENST00000503742 TXNDC2Q86VQ3 553 aa28.4■■■□□ 2.14
UBE2D3-216ENST00000503742 SHPRHQ149N8 1683 aa28.38■■■□□ 2.13
UBE2D3-216ENST00000503742 ANKRD26Q9UPS8 1709 aa28.37■■■□□ 2.13
UBE2D3-216ENST00000503742 CABP1Q9NZU7 370 aa28.36■■■□□ 2.13
UBE2D3-216ENST00000503742 ATP7BP35670 1465 aa28.36■■■□□ 2.13
UBE2D3-216ENST00000503742 WASLO00401 505 aaPredicted RBP28.35■■■□□ 2.13
UBE2D3-216ENST00000503742 TNNT2P45379 298 aaPredicted RBP28.35■■■□□ 2.13
UBE2D3-216ENST00000503742 HDGFL2Q7Z4V5 671 aaPredicted RBP28.35■■■□□ 2.13
UBE2D3-216ENST00000503742 DNAJC5Q9H3Z4 198 aa28.35■■■□□ 2.13
UBE2D3-216ENST00000503742 EID1Q9Y6B2 187 aa28.35■■■□□ 2.13
UBE2D3-216ENST00000503742 CDCA7LQ96GN5 454 aa28.34■■■□□ 2.13
UBE2D3-216ENST00000503742 ZNF521Q96K83 1311 aa28.33■■■□□ 2.13
UBE2D3-216ENST00000503742 THEMISQ8N1K5 641 aaPredicted RBP28.32■■■□□ 2.12
UBE2D3-216ENST00000503742 ROBO2Q9HCK4 1378 aa28.32■■■□□ 2.12
UBE2D3-216ENST00000503742 FYB1O15117 783 aa28.31■■■□□ 2.12
UBE2D3-216ENST00000503742 MTHFSP49914 203 aa28.31■■■□□ 2.12
UBE2D3-216ENST00000503742 PLPPR3Q6T4P5 718 aa28.31■■■□□ 2.12
UBE2D3-216ENST00000503742 RIMS1Q86UR5 1692 aaKnown RBP28.3■■■□□ 2.12
UBE2D3-216ENST00000503742 KIF20BQ96Q89 1820 aa28.29■■■□□ 2.12
UBE2D3-216ENST00000503742 MYT1Q01538 1121 aa28.29■■■□□ 2.12
UBE2D3-216ENST00000503742 ADGRB2O60241 1585 aa28.28■■■□□ 2.12
UBE2D3-216ENST00000503742 CCDC146Q8IYE0 955 aa28.28■■■□□ 2.12
UBE2D3-216ENST00000503742 GGNBP2Q9H3C7 697 aa28.28■■■□□ 2.12
UBE2D3-216ENST00000503742 PPP4R2Q9NY27 417 aa28.28■■■□□ 2.12
UBE2D3-216ENST00000503742 PTPRUQ92729 1446 aa28.27■■■□□ 2.12
UBE2D3-216ENST00000503742 CPSF1Q10570 1443 aaKnown RBP28.27■■■□□ 2.12
UBE2D3-216ENST00000503742 TBX22Q9Y458 520 aa28.26■■■□□ 2.11
UBE2D3-216ENST00000503742 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.26■■■□□ 2.11
UBE2D3-216ENST00000503742 DIP2AQ14689 1571 aa28.26■■■□□ 2.11
UBE2D3-216ENST00000503742 CEP170BQ9Y4F5 1589 aaPredicted RBP28.26■■■□□ 2.11
UBE2D3-216ENST00000503742 CFAP53Q96M91 514 aa28.26■■■□□ 2.11
UBE2D3-216ENST00000503742 PPIP5K1Q6PFW1 1433 aa28.25■■■□□ 2.11
UBE2D3-216ENST00000503742 ADAMTSL3P82987 1691 aa28.25■■■□□ 2.11
UBE2D3-216ENST00000503742 RCAN3Q9UKA8 241 aa28.25■■■□□ 2.11
UBE2D3-216ENST00000503742 SLC26A8Q96RN1 970 aa28.24■■■□□ 2.11
UBE2D3-216ENST00000503742 NGEFQ8N5V2 710 aa28.24■■■□□ 2.11
UBE2D3-216ENST00000503742 NUDT16Q96DE0 195 aaKnown RBP28.24■■■□□ 2.11
UBE2D3-216ENST00000503742 APAF1O14727 1248 aa28.23■■■□□ 2.11
UBE2D3-216ENST00000503742 CDC42BPGQ6DT37 1551 aa28.22■■■□□ 2.11
UBE2D3-216ENST00000503742 CCDC61Q9Y6R9 512 aa28.2■■■□□ 2.11
UBE2D3-216ENST00000503742 EDC4Q6P2E9 1401 aaKnown RBP28.19■■■□□ 2.1
UBE2D3-216ENST00000503742 GOLGA2Q08379 1002 aa28.19■■■□□ 2.1
UBE2D3-216ENST00000503742 MON2Q7Z3U7 1717 aa28.19■■■□□ 2.1
UBE2D3-216ENST00000503742 RRP1P56182 461 aaKnown RBP28.19■■■□□ 2.1
UBE2D3-216ENST00000503742 PTCH1Q13635 1447 aa28.18■■■□□ 2.1
UBE2D3-216ENST00000503742 COL3A1P02461 1466 aaPredicted RBP28.18■■■□□ 2.1
UBE2D3-216ENST00000503742 AKAP12Q02952 1782 aa28.18■■■□□ 2.1
UBE2D3-216ENST00000503742 PRR36Q9H6K5 1346 aa28.18■■■□□ 2.1
UBE2D3-216ENST00000503742 DUSP27Q5VZP5 1158 aa28.17■■■□□ 2.1
UBE2D3-216ENST00000503742 AMOTL2Q9Y2J4 779 aa28.17■■■□□ 2.1
UBE2D3-216ENST00000503742 ZNF142P52746 1687 aaPredicted RBP28.16■■■□□ 2.1
UBE2D3-216ENST00000503742 RUNDC1Q96C34 613 aa28.16■■■□□ 2.1
UBE2D3-216ENST00000503742 IQSEC2Q5JU85 1478 aa28.15■■■□□ 2.1
UBE2D3-216ENST00000503742 TOPAZ1Q8N9V7 1692 aa28.15■■■□□ 2.1
UBE2D3-216ENST00000503742 SLFN5Q08AF3 891 aa28.15■■■□□ 2.1
UBE2D3-216ENST00000503742 TRMT2AQ8IZ69 625 aaKnown RBP28.15■■■□□ 2.1
UBE2D3-216ENST00000503742 NCKAP5LQ9HCH0 1330 aa28.14■■■□□ 2.1
UBE2D3-216ENST00000503742 ITSN1Q15811 1721 aa28.14■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms