RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 FOXD1Q16676 465 aa23.95■■□□□ 1.42
HDAC6-236ENST00000498808 MARF1Q9Y4F3 1742 aaKnown RBP23.93■■□□□ 1.42
HDAC6-236ENST00000498808 CCDC125Q86Z20 511 aa23.92■■□□□ 1.42
HDAC6-236ENST00000498808 PXDNQ92626 1479 aa23.91■■□□□ 1.42
HDAC6-236ENST00000498808 HFM1A2PYH4 1435 aa23.91■■□□□ 1.42
HDAC6-236ENST00000498808 NPHP3Q7Z494 1330 aa23.88■■□□□ 1.41
HDAC6-236ENST00000498808 CDC42BPGQ6DT37 1551 aa23.88■■□□□ 1.41
HDAC6-236ENST00000498808 GJD4Q96KN9 370 aaPredicted RBP23.88■■□□□ 1.41
HDAC6-236ENST00000498808 VGFO15240 615 aaPredicted RBP23.87■■□□□ 1.41
HDAC6-236ENST00000498808 ESCO1Q5FWF5 840 aa23.86■■□□□ 1.41
HDAC6-236ENST00000498808 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.86■■□□□ 1.41
HDAC6-236ENST00000498808 XPCQ01831 940 aaPredicted RBP23.85■■□□□ 1.41
HDAC6-236ENST00000498808 GLI3P10071 1580 aa23.84■■□□□ 1.41
HDAC6-236ENST00000498808 FOXO3O43524 673 aa23.83■■□□□ 1.41
HDAC6-236ENST00000498808 PPLO60437 1756 aa23.82■■□□□ 1.4
HDAC6-236ENST00000498808 BLMP54132 1417 aaPredicted RBP23.82■■□□□ 1.4
HDAC6-236ENST00000498808 RALGAPBQ86X10 1494 aa23.81■■□□□ 1.4
HDAC6-236ENST00000498808 SLIT2O94813 1529 aa23.81■■□□□ 1.4
HDAC6-236ENST00000498808 RPGRIP1LQ68CZ1 1315 aa23.8■■□□□ 1.4
HDAC6-236ENST00000498808 BRWD3Q6RI45 1802 aa23.8■■□□□ 1.4
HDAC6-236ENST00000498808 NAIPQ13075 1403 aa23.78■■□□□ 1.4
HDAC6-236ENST00000498808 UNC5CLQ8IV45 518 aa23.78■■□□□ 1.4
HDAC6-236ENST00000498808 DEFB132Q7Z7B7 95 aa23.77■■□□□ 1.4
HDAC6-236ENST00000498808 NUTM2FA1L443 756 aa23.76■■□□□ 1.39
HDAC6-236ENST00000498808 LRPPRCP42704 1394 aaKnown RBP23.76■■□□□ 1.39
HDAC6-236ENST00000498808 USP32Q8NFA0 1604 aa23.74■■□□□ 1.39
HDAC6-236ENST00000498808 SPATA31A3Q5VYP0 1347 aa23.73■■□□□ 1.39
HDAC6-236ENST00000498808 TECPR2O15040 1411 aa23.73■■□□□ 1.39
HDAC6-236ENST00000498808 LRP5O75197 1615 aa23.73■■□□□ 1.39
HDAC6-236ENST00000498808 WAPLQ7Z5K2 1190 aa23.72■■□□□ 1.39
HDAC6-236ENST00000498808 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
HDAC6-236ENST00000498808 FMN2Q9NZ56 1722 aa23.7■■□□□ 1.39
HDAC6-236ENST00000498808 SEPT12Q8IYM1 358 aa23.7■■□□□ 1.38
HDAC6-236ENST00000498808 PLEKHH1Q9ULM0 1364 aa23.69■■□□□ 1.38
HDAC6-236ENST00000498808 ADGRF5Q8IZF2 1346 aa23.69■■□□□ 1.38
HDAC6-236ENST00000498808 KIF1AQ12756 1690 aa23.69■■□□□ 1.38
HDAC6-236ENST00000498808 STK26Q9P289 416 aa23.68■■□□□ 1.38
HDAC6-236ENST00000498808 CCDC144AA2RUR9 1427 aa23.67■■□□□ 1.38
HDAC6-236ENST00000498808 KNDC1Q76NI1 1749 aa23.67■■□□□ 1.38
HDAC6-236ENST00000498808 SF3B2Q13435 895 aaKnown RBP23.67■■□□□ 1.38
HDAC6-236ENST00000498808 RRBP1Q9P2E9 1410 aaKnown RBP23.67■■□□□ 1.38
HDAC6-236ENST00000498808 VPS72Q15906 364 aa23.66■■□□□ 1.38
HDAC6-236ENST00000498808 PLCH1Q4KWH8 1693 aa23.66■■□□□ 1.38
HDAC6-236ENST00000498808 KRT28Q7Z3Y7 464 aa23.65■■□□□ 1.38
HDAC6-236ENST00000498808 ABCC11Q96J66 1382 aa23.65■■□□□ 1.38
HDAC6-236ENST00000498808 SLC4A1APQ9BWU0 796 aaKnown RBP23.64■■□□□ 1.37
HDAC6-236ENST00000498808 NWD2Q9ULI1 1742 aa23.64■■□□□ 1.37
HDAC6-236ENST00000498808 ONECUT3O60422 494 aaPredicted RBP23.63■■□□□ 1.37
HDAC6-236ENST00000498808 TNS3Q68CZ2 1445 aa23.63■■□□□ 1.37
HDAC6-236ENST00000498808 ABCA3Q99758 1704 aa23.62■■□□□ 1.37
HDAC6-236ENST00000498808 TMEM132EQ6IEE7 984 aa23.62■■□□□ 1.37
HDAC6-236ENST00000498808 CABLES1Q8TDN4 633 aa23.62■■□□□ 1.37
HDAC6-236ENST00000498808 IFT172Q9UG01 1749 aa23.62■■□□□ 1.37
HDAC6-236ENST00000498808 RGPD8O14715 1765 aaPredicted RBP23.61■■□□□ 1.37
HDAC6-236ENST00000498808 KRT27Q7Z3Y8 459 aa23.61■■□□□ 1.37
HDAC6-236ENST00000498808 HAP1P54257 671 aaPredicted RBP23.6■■□□□ 1.37
HDAC6-236ENST00000498808 PSDA5PKW4 1024 aaPredicted RBP23.59■■□□□ 1.37
HDAC6-236ENST00000498808 SPATA31E1Q6ZUB1 1445 aa23.59■■□□□ 1.37
HDAC6-236ENST00000498808 CCDC9Q9Y3X0 531 aaKnown RBP23.58■■□□□ 1.37
HDAC6-236ENST00000498808 YTHDC2Q9H6S0 1430 aaKnown RBP23.58■■□□□ 1.36
HDAC6-236ENST00000498808 PLEKHG5O94827 1062 aa23.57■■□□□ 1.36
HDAC6-236ENST00000498808 PIK3C2GO75747 1445 aa23.57■■□□□ 1.36
HDAC6-236ENST00000498808 ANKRD30BQ9BXX2 1392 aa23.56■■□□□ 1.36
HDAC6-236ENST00000498808 HRCP23327 699 aa23.56■■□□□ 1.36
HDAC6-236ENST00000498808 RGL3Q3MIN7 710 aa23.56■■□□□ 1.36
HDAC6-236ENST00000498808 PHF8Q9UPP1 1060 aa23.56■■□□□ 1.36
HDAC6-236ENST00000498808 NRXN1Q9ULB1 1477 aa23.55■■□□□ 1.36
HDAC6-236ENST00000498808 SBNO1A3KN83 1393 aa23.54■■□□□ 1.36
HDAC6-236ENST00000498808 NRAPQ86VF7 1730 aa23.54■■□□□ 1.36
HDAC6-236ENST00000498808 BAG6P46379 1132 aa23.54■■□□□ 1.36
HDAC6-236ENST00000498808 PSME1Q06323 249 aa23.54■■□□□ 1.36
HDAC6-236ENST00000498808 FAM83GA6ND36 823 aa23.52■■□□□ 1.36
HDAC6-236ENST00000498808 ARHGEF10O15013 1369 aa23.52■■□□□ 1.36
HDAC6-236ENST00000498808 LMOD2Q6P5Q4 547 aa23.51■■□□□ 1.35
HDAC6-236ENST00000498808 SIRT1Q96EB6 747 aa23.51■■□□□ 1.35
HDAC6-236ENST00000498808 A0A0G2JS52 829 aa23.5■■□□□ 1.35
HDAC6-236ENST00000498808 MYT1Q01538 1121 aa23.5■■□□□ 1.35
HDAC6-236ENST00000498808 FAM98CQ17RN3 349 aaKnown RBP23.49■■□□□ 1.35
HDAC6-236ENST00000498808 RGPD1P0DJD0 1748 aa23.48■■□□□ 1.35
HDAC6-236ENST00000498808 EN1Q05925 392 aaPredicted RBP23.48■■□□□ 1.35
HDAC6-236ENST00000498808 TRPM3Q9HCF6 1732 aaPredicted RBP23.45■■□□□ 1.34
HDAC6-236ENST00000498808 BTG4Q9NY30 223 aa23.45■■□□□ 1.34
HDAC6-236ENST00000498808 FAM182BQ5T319 152 aa23.44■■□□□ 1.34
HDAC6-236ENST00000498808 PMFBP1Q8TBY8 1022 aa23.44■■□□□ 1.34
HDAC6-236ENST00000498808 C14orf93Q9H972 538 aaKnown RBP23.44■■□□□ 1.34
HDAC6-236ENST00000498808 DISP2A7MBM2 1401 aa23.43■■□□□ 1.34
HDAC6-236ENST00000498808 COL14A1Q05707 1796 aaKnown RBP23.43■■□□□ 1.34
HDAC6-236ENST00000498808 TNS1Q9HBL0 1735 aaKnown RBP23.43■■□□□ 1.34
HDAC6-236ENST00000498808 SAFB2Q14151 953 aaKnown RBP eCLIP23.43■■□□□ 1.34
HDAC6-236ENST00000498808 R3HDM1Q15032 1099 aaKnown RBP23.43■■□□□ 1.34
HDAC6-236ENST00000498808 ALS2Q96Q42 1657 aa23.42■■□□□ 1.34
HDAC6-236ENST00000498808 ANKARQ7Z5J8 1434 aa23.42■■□□□ 1.34
HDAC6-236ENST00000498808 THSD7AQ9UPZ6 1657 aa23.41■■□□□ 1.34
HDAC6-236ENST00000498808 CFAP70Q5T0N1 1121 aa23.41■■□□□ 1.34
HDAC6-236ENST00000498808 PRAM1Q96QH2 718 aa23.41■■□□□ 1.34
HDAC6-236ENST00000498808 DHX57Q6P158 1386 aaKnown RBP23.4■■□□□ 1.34
HDAC6-236ENST00000498808 SPATA31A5Q5VU36 1347 aa23.39■■□□□ 1.34
HDAC6-236ENST00000498808 SPATA31A7Q8IWB4 1347 aa23.39■■□□□ 1.34
HDAC6-236ENST00000498808 ADGRB2O60241 1585 aa23.39■■□□□ 1.33
HDAC6-236ENST00000498808 MPHOSPH9Q99550 1183 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms