RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 CDK12Q9NYV4 1490 aaPredicted RBP34.58■■■■□ 3.13
COL27A1-208ENST00000494780 C8orf37Q96NL8 207 aa34.57■■■■□ 3.12
COL27A1-208ENST00000494780 LRPPRCP42704 1394 aaKnown RBP34.56■■■■□ 3.12
COL27A1-208ENST00000494780 STK26Q9P289 416 aa34.54■■■■□ 3.12
COL27A1-208ENST00000494780 PIK3C2GO75747 1445 aa34.54■■■■□ 3.12
COL27A1-208ENST00000494780 ABCC11Q96J66 1382 aa34.53■■■■□ 3.12
COL27A1-208ENST00000494780 ESCO1Q5FWF5 840 aa34.51■■■■□ 3.12
COL27A1-208ENST00000494780 WAPLQ7Z5K2 1190 aa34.5■■■■□ 3.11
COL27A1-208ENST00000494780 KNDC1Q76NI1 1749 aa34.5■■■■□ 3.11
COL27A1-208ENST00000494780 TMEM132EQ6IEE7 984 aa34.49■■■■□ 3.11
COL27A1-208ENST00000494780 UPF1Q92900 1129 aaKnown RBP eCLIP34.49■■■■□ 3.11
COL27A1-208ENST00000494780 QTRT2Q9H974 415 aaKnown RBP34.49■■■■□ 3.11
COL27A1-208ENST00000494780 NPHP3Q7Z494 1330 aa34.49■■■■□ 3.11
COL27A1-208ENST00000494780 ADAMTS2O95450 1211 aa34.48■■■■□ 3.11
COL27A1-208ENST00000494780 NGLY1Q96IV0 654 aa34.48■■■■□ 3.11
COL27A1-208ENST00000494780 RBM6P78332 1123 aaKnown RBP34.46■■■■□ 3.11
COL27A1-208ENST00000494780 YTHDC2Q9H6S0 1430 aaKnown RBP34.45■■■■□ 3.11
COL27A1-208ENST00000494780 COL22A1Q8NFW1 1626 aaPredicted RBP34.44■■■■□ 3.1
COL27A1-208ENST00000494780 PLEKHH1Q9ULM0 1364 aa34.43■■■■□ 3.1
COL27A1-208ENST00000494780 PXDNQ92626 1479 aa34.42■■■■□ 3.1
COL27A1-208ENST00000494780 SIRT1Q96EB6 747 aa34.41■■■■□ 3.1
COL27A1-208ENST00000494780 C14orf93Q9H972 538 aaKnown RBP34.41■■■■□ 3.1
COL27A1-208ENST00000494780 NRXN1Q9ULB1 1477 aa34.4■■■■□ 3.1
COL27A1-208ENST00000494780 FOXO3O43524 673 aa34.4■■■■□ 3.1
COL27A1-208ENST00000494780 MYOM2P54296 1465 aa34.39■■■■□ 3.1
COL27A1-208ENST00000494780 RGS12O14924 1447 aa34.38■■■■□ 3.09
COL27A1-208ENST00000494780 NUTM2FA1L443 756 aa34.37■■■■□ 3.09
COL27A1-208ENST00000494780 RAB3GAP2Q9H2M9 1393 aa34.36■■■■□ 3.09
COL27A1-208ENST00000494780 FNBP4Q8N3X1 1017 aaPredicted RBP34.36■■■■□ 3.09
COL27A1-208ENST00000494780 USP21Q9UK80 565 aa34.36■■■■□ 3.09
COL27A1-208ENST00000494780 FMN2Q9NZ56 1722 aa34.35■■■■□ 3.09
COL27A1-208ENST00000494780 XPCQ01831 940 aaPredicted RBP34.34■■■■□ 3.09
COL27A1-208ENST00000494780 DHX57Q6P158 1386 aaKnown RBP34.34■■■■□ 3.09
COL27A1-208ENST00000494780 CFAP70Q5T0N1 1121 aa34.33■■■■□ 3.09
COL27A1-208ENST00000494780 TRPC5Q9UL62 973 aaPredicted RBP34.32■■■■□ 3.08
COL27A1-208ENST00000494780 KIF1AQ12756 1690 aa34.3■■■■□ 3.08
COL27A1-208ENST00000494780 ATRNO75882 1429 aa34.26■■■■□ 3.07
COL27A1-208ENST00000494780 SPATA31A3Q5VYP0 1347 aa34.24■■■■□ 3.07
COL27A1-208ENST00000494780 MARF1Q9Y4F3 1742 aaKnown RBP34.24■■■■□ 3.07
COL27A1-208ENST00000494780 PRAM1Q96QH2 718 aa34.22■■■■□ 3.07
COL27A1-208ENST00000494780 DLC1Q96QB1 1528 aa34.21■■■■□ 3.07
COL27A1-208ENST00000494780 KRT28Q7Z3Y7 464 aa34.21■■■■□ 3.07
COL27A1-208ENST00000494780 BCL9LQ86UU0 1499 aa34.2■■■■□ 3.06
COL27A1-208ENST00000494780 PHF8Q9UPP1 1060 aa34.19■■■■□ 3.06
COL27A1-208ENST00000494780 SAFB2Q14151 953 aaKnown RBP eCLIP34.17■■■■□ 3.06
COL27A1-208ENST00000494780 POGKQ9P215 609 aa34.17■■■■□ 3.06
COL27A1-208ENST00000494780 ATAD2Q6PL18 1390 aa34.16■■■■□ 3.06
COL27A1-208ENST00000494780 PSME1Q06323 249 aa34.16■■■■□ 3.06
COL27A1-208ENST00000494780 RGPD8O14715 1765 aaPredicted RBP34.16■■■■□ 3.06
COL27A1-208ENST00000494780 ADGRB1O14514 1584 aa34.15■■■■□ 3.06
COL27A1-208ENST00000494780 HRCP23327 699 aa34.15■■■■□ 3.06
COL27A1-208ENST00000494780 TNS3Q68CZ2 1445 aa34.13■■■■□ 3.05
COL27A1-208ENST00000494780 STAC3Q96MF2 364 aa34.12■■■■□ 3.05
COL27A1-208ENST00000494780 ANKARQ7Z5J8 1434 aa34.12■■■■□ 3.05
COL27A1-208ENST00000494780 ADGRB2O60241 1585 aa34.11■■■■□ 3.05
COL27A1-208ENST00000494780 DCAF11Q8TEB1 546 aa34.1■■■■□ 3.05
COL27A1-208ENST00000494780 GJD4Q96KN9 370 aaPredicted RBP34.1■■■■□ 3.05
COL27A1-208ENST00000494780 KDM2AQ9Y2K7 1162 aa34.1■■■■□ 3.05
COL27A1-208ENST00000494780 TNKS1BP1Q9C0C2 1729 aaKnown RBP34.1■■■■□ 3.05
COL27A1-208ENST00000494780 SBNO1A3KN83 1393 aa34.1■■■■□ 3.05
COL27A1-208ENST00000494780 SLIT2O94813 1529 aa34.09■■■■□ 3.05
COL27A1-208ENST00000494780 UNC5CLQ8IV45 518 aa34.08■■■■□ 3.05
COL27A1-208ENST00000494780 TRAK1Q9UPV9 953 aa34.08■■■■□ 3.05
COL27A1-208ENST00000494780 USP32Q8NFA0 1604 aa34.08■■■■□ 3.05
COL27A1-208ENST00000494780 ARHGEF10O15013 1369 aa34.04■■■■□ 3.04
COL27A1-208ENST00000494780 HAP1P54257 671 aaPredicted RBP34.04■■■■□ 3.04
COL27A1-208ENST00000494780 EIF3AQ14152 1382 aaKnown RBP34.02■■■■□ 3.04
COL27A1-208ENST00000494780 PMFBP1Q8TBY8 1022 aa34.02■■■■□ 3.04
COL27A1-208ENST00000494780 CABLES1Q8TDN4 633 aa34■■■■□ 3.03
COL27A1-208ENST00000494780 HIRIP3Q9BW71 556 aaPredicted RBP34■■■■□ 3.03
COL27A1-208ENST00000494780 MINK1Q8N4C8 1332 aaPredicted RBP34■■■■□ 3.03
COL27A1-208ENST00000494780 LMOD2Q6P5Q4 547 aa33.99■■■■□ 3.03
COL27A1-208ENST00000494780 RALGAPBQ86X10 1494 aa33.99■■■■□ 3.03
COL27A1-208ENST00000494780 GLI3P10071 1580 aa33.97■■■■□ 3.03
COL27A1-208ENST00000494780 TULP4Q9NRJ4 1543 aa33.96■■■■□ 3.03
COL27A1-208ENST00000494780 WASLO00401 505 aaPredicted RBP33.95■■■■□ 3.03
COL27A1-208ENST00000494780 ABCA3Q99758 1704 aa33.95■■■■□ 3.03
COL27A1-208ENST00000494780 CCDC125Q86Z20 511 aa33.94■■■■□ 3.02
COL27A1-208ENST00000494780 PRR36Q9H6K5 1346 aa33.94■■■■□ 3.02
COL27A1-208ENST00000494780 GPRASP1Q5JY77 1395 aa33.94■■■■□ 3.02
COL27A1-208ENST00000494780 PLEKHG5O94827 1062 aa33.93■■■■□ 3.02
COL27A1-208ENST00000494780 VPS72Q15906 364 aa33.92■■■■□ 3.02
COL27A1-208ENST00000494780 NWD2Q9ULI1 1742 aa33.92■■■■□ 3.02
COL27A1-208ENST00000494780 TRPM3Q9HCF6 1732 aaPredicted RBP33.91■■■■□ 3.02
COL27A1-208ENST00000494780 PLCH1Q4KWH8 1693 aa33.91■■■■□ 3.02
COL27A1-208ENST00000494780 ARHGEF28Q8N1W1 1705 aaKnown RBP33.87■■■■□ 3.01
COL27A1-208ENST00000494780 FAM83GA6ND36 823 aa33.86■■■■□ 3.01
COL27A1-208ENST00000494780 ALS2Q96Q42 1657 aa33.86■■■■□ 3.01
COL27A1-208ENST00000494780 NGDNQ8NEJ9 315 aaKnown RBP33.84■■■■□ 3.01
COL27A1-208ENST00000494780 SEPT12Q8IYM1 358 aa33.83■■■■□ 3.01
COL27A1-208ENST00000494780 ONECUT3O60422 494 aaPredicted RBP33.82■■■■□ 3
COL27A1-208ENST00000494780 CCDC9Q9Y3X0 531 aaKnown RBP33.82■■■■□ 3
COL27A1-208ENST00000494780 ATP7BP35670 1465 aa33.8■■■■□ 3
COL27A1-208ENST00000494780 BRWD3Q6RI45 1802 aa33.79■■■■□ 3
COL27A1-208ENST00000494780 NUDT16Q96DE0 195 aaKnown RBP33.79■■■■□ 3
COL27A1-208ENST00000494780 ITSN1Q15811 1721 aa33.79■■■■□ 3
COL27A1-208ENST00000494780 ZRANB1Q9UGI0 708 aa33.78■■■■□ 3
COL27A1-208ENST00000494780 KIAA1210Q9ULL0 1709 aa33.78■■■■□ 3
COL27A1-208ENST00000494780 EP400Q96L91 3159 aa33.78■■■■□ 3
COL27A1-208ENST00000494780 BLMP54132 1417 aaPredicted RBP33.78■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms