RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 AFF2P51816 1311 aa24.64■■□□□ 1.54
PTPRU-208ENST00000493601 SOS2Q07890 1332 aaPredicted RBP24.64■■□□□ 1.54
PTPRU-208ENST00000493601 STK26Q9P289 416 aa24.63■■□□□ 1.53
PTPRU-208ENST00000493601 ABCC11Q96J66 1382 aa24.63■■□□□ 1.53
PTPRU-208ENST00000493601 RAB3GAP2Q9H2M9 1393 aa24.63■■□□□ 1.53
PTPRU-208ENST00000493601 MYOM2P54296 1465 aa24.63■■□□□ 1.53
PTPRU-208ENST00000493601 CDK12Q9NYV4 1490 aaPredicted RBP24.62■■□□□ 1.53
PTPRU-208ENST00000493601 COL22A1Q8NFW1 1626 aaPredicted RBP24.61■■□□□ 1.53
PTPRU-208ENST00000493601 RXRBP28702 533 aa24.61■■□□□ 1.53
PTPRU-208ENST00000493601 NRXN1Q9ULB1 1477 aa24.61■■□□□ 1.53
PTPRU-208ENST00000493601 YTHDC2Q9H6S0 1430 aaKnown RBP24.61■■□□□ 1.53
PTPRU-208ENST00000493601 C8orf37Q96NL8 207 aa24.6■■□□□ 1.53
PTPRU-208ENST00000493601 FMN2Q9NZ56 1722 aa24.59■■□□□ 1.53
PTPRU-208ENST00000493601 TMEM132EQ6IEE7 984 aa24.59■■□□□ 1.53
PTPRU-208ENST00000493601 NPHP3Q7Z494 1330 aa24.59■■□□□ 1.53
PTPRU-208ENST00000493601 ESCO1Q5FWF5 840 aa24.58■■□□□ 1.53
PTPRU-208ENST00000493601 WAPLQ7Z5K2 1190 aa24.57■■□□□ 1.52
PTPRU-208ENST00000493601 PXDNQ92626 1479 aa24.57■■□□□ 1.52
PTPRU-208ENST00000493601 PLEKHH1Q9ULM0 1364 aa24.56■■□□□ 1.52
PTPRU-208ENST00000493601 KIF1AQ12756 1690 aa24.56■■□□□ 1.52
PTPRU-208ENST00000493601 ADAMTS2O95450 1211 aa24.54■■□□□ 1.52
PTPRU-208ENST00000493601 C14orf93Q9H972 538 aaKnown RBP24.54■■□□□ 1.52
PTPRU-208ENST00000493601 NGLY1Q96IV0 654 aa24.52■■□□□ 1.52
PTPRU-208ENST00000493601 DHX57Q6P158 1386 aaKnown RBP24.52■■□□□ 1.52
PTPRU-208ENST00000493601 SIRT1Q96EB6 747 aa24.51■■□□□ 1.51
PTPRU-208ENST00000493601 MARF1Q9Y4F3 1742 aaKnown RBP24.51■■□□□ 1.51
PTPRU-208ENST00000493601 QTRT2Q9H974 415 aaKnown RBP24.5■■□□□ 1.51
PTPRU-208ENST00000493601 NUTM2FA1L443 756 aa24.49■■□□□ 1.51
PTPRU-208ENST00000493601 FOXO3O43524 673 aa24.49■■□□□ 1.51
PTPRU-208ENST00000493601 RBM6P78332 1123 aaKnown RBP24.49■■□□□ 1.51
PTPRU-208ENST00000493601 RGS12O14924 1447 aa24.48■■□□□ 1.51
PTPRU-208ENST00000493601 CFAP70Q5T0N1 1121 aa24.48■■□□□ 1.51
PTPRU-208ENST00000493601 DLC1Q96QB1 1528 aa24.47■■□□□ 1.51
PTPRU-208ENST00000493601 UPF1Q92900 1129 aaKnown RBP eCLIP24.47■■□□□ 1.51
PTPRU-208ENST00000493601 XPCQ01831 940 aaPredicted RBP24.46■■□□□ 1.51
PTPRU-208ENST00000493601 RGPD8O14715 1765 aaPredicted RBP24.46■■□□□ 1.51
PTPRU-208ENST00000493601 USP21Q9UK80 565 aa24.44■■□□□ 1.5
PTPRU-208ENST00000493601 ADGRB1O14514 1584 aa24.43■■□□□ 1.5
PTPRU-208ENST00000493601 ADGRB2O60241 1585 aa24.43■■□□□ 1.5
PTPRU-208ENST00000493601 FNBP4Q8N3X1 1017 aaPredicted RBP24.42■■□□□ 1.5
PTPRU-208ENST00000493601 PRAM1Q96QH2 718 aa24.42■■□□□ 1.5
PTPRU-208ENST00000493601 HRCP23327 699 aa24.41■■□□□ 1.5
PTPRU-208ENST00000493601 TRPC5Q9UL62 973 aaPredicted RBP24.41■■□□□ 1.5
PTPRU-208ENST00000493601 ATRNO75882 1429 aa24.39■■□□□ 1.5
PTPRU-208ENST00000493601 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.38■■□□□ 1.49
PTPRU-208ENST00000493601 SPATA31A3Q5VYP0 1347 aa24.38■■□□□ 1.49
PTPRU-208ENST00000493601 SAFB2Q14151 953 aaKnown RBP eCLIP24.38■■□□□ 1.49
PTPRU-208ENST00000493601 POGKQ9P215 609 aa24.38■■□□□ 1.49
PTPRU-208ENST00000493601 ANKARQ7Z5J8 1434 aa24.37■■□□□ 1.49
PTPRU-208ENST00000493601 USP32Q8NFA0 1604 aa24.37■■□□□ 1.49
PTPRU-208ENST00000493601 STAC3Q96MF2 364 aa24.37■■□□□ 1.49
PTPRU-208ENST00000493601 PHF8Q9UPP1 1060 aa24.37■■□□□ 1.49
PTPRU-208ENST00000493601 TNS3Q68CZ2 1445 aa24.36■■□□□ 1.49
PTPRU-208ENST00000493601 BCL9LQ86UU0 1499 aa24.35■■□□□ 1.49
PTPRU-208ENST00000493601 KRT28Q7Z3Y7 464 aa24.35■■□□□ 1.49
PTPRU-208ENST00000493601 DCAF11Q8TEB1 546 aa24.35■■□□□ 1.49
PTPRU-208ENST00000493601 PSME1Q06323 249 aa24.34■■□□□ 1.49
PTPRU-208ENST00000493601 EIF3AQ14152 1382 aaKnown RBP24.33■■□□□ 1.49
PTPRU-208ENST00000493601 KDM2AQ9Y2K7 1162 aa24.33■■□□□ 1.49
PTPRU-208ENST00000493601 ABCA3Q99758 1704 aa24.32■■□□□ 1.48
PTPRU-208ENST00000493601 ATAD2Q6PL18 1390 aa24.32■■□□□ 1.48
PTPRU-208ENST00000493601 TRAK1Q9UPV9 953 aa24.32■■□□□ 1.48
PTPRU-208ENST00000493601 SBNO1A3KN83 1393 aa24.31■■□□□ 1.48
PTPRU-208ENST00000493601 ARHGEF28Q8N1W1 1705 aaKnown RBP24.3■■□□□ 1.48
PTPRU-208ENST00000493601 TULP4Q9NRJ4 1543 aa24.3■■□□□ 1.48
PTPRU-208ENST00000493601 ARHGEF10O15013 1369 aa24.29■■□□□ 1.48
PTPRU-208ENST00000493601 SLIT2O94813 1529 aa24.29■■□□□ 1.48
PTPRU-208ENST00000493601 EP400Q96L91 3159 aa24.28■■□□□ 1.48
PTPRU-208ENST00000493601 TRPM3Q9HCF6 1732 aaPredicted RBP24.27■■□□□ 1.48
PTPRU-208ENST00000493601 HAP1P54257 671 aaPredicted RBP24.27■■□□□ 1.48
PTPRU-208ENST00000493601 PLCH1Q4KWH8 1693 aa24.27■■□□□ 1.48
PTPRU-208ENST00000493601 HIRIP3Q9BW71 556 aaPredicted RBP24.26■■□□□ 1.47
PTPRU-208ENST00000493601 MINK1Q8N4C8 1332 aaPredicted RBP24.26■■□□□ 1.47
PTPRU-208ENST00000493601 NWD2Q9ULI1 1742 aa24.26■■□□□ 1.47
PTPRU-208ENST00000493601 ITSN1Q15811 1721 aa24.25■■□□□ 1.47
PTPRU-208ENST00000493601 KIAA1210Q9ULL0 1709 aa24.24■■□□□ 1.47
PTPRU-208ENST00000493601 UNC5CLQ8IV45 518 aa24.24■■□□□ 1.47
PTPRU-208ENST00000493601 PMFBP1Q8TBY8 1022 aa24.24■■□□□ 1.47
PTPRU-208ENST00000493601 GJD4Q96KN9 370 aaPredicted RBP24.24■■□□□ 1.47
PTPRU-208ENST00000493601 LMOD2Q6P5Q4 547 aa24.23■■□□□ 1.47
PTPRU-208ENST00000493601 GLI3P10071 1580 aa24.23■■□□□ 1.47
PTPRU-208ENST00000493601 ALS2Q96Q42 1657 aa24.23■■□□□ 1.47
PTPRU-208ENST00000493601 RALGAPBQ86X10 1494 aa24.22■■□□□ 1.47
PTPRU-208ENST00000493601 GPRASP1Q5JY77 1395 aa24.22■■□□□ 1.47
PTPRU-208ENST00000493601 WASLO00401 505 aaPredicted RBP24.21■■□□□ 1.47
PTPRU-208ENST00000493601 PRR36Q9H6K5 1346 aa24.2■■□□□ 1.46
PTPRU-208ENST00000493601 CABLES1Q8TDN4 633 aa24.2■■□□□ 1.46
PTPRU-208ENST00000493601 PLEKHG5O94827 1062 aa24.17■■□□□ 1.46
PTPRU-208ENST00000493601 ATP7BP35670 1465 aa24.17■■□□□ 1.46
PTPRU-208ENST00000493601 CRYBG1Q9Y4K1 1723 aa24.15■■□□□ 1.46
PTPRU-208ENST00000493601 NRAPQ86VF7 1730 aa24.14■■□□□ 1.45
PTPRU-208ENST00000493601 NGDNQ8NEJ9 315 aaKnown RBP24.14■■□□□ 1.45
PTPRU-208ENST00000493601 BRWD3Q6RI45 1802 aa24.14■■□□□ 1.45
PTPRU-208ENST00000493601 TOPAZ1Q8N9V7 1692 aa24.14■■□□□ 1.45
PTPRU-208ENST00000493601 COL14A1Q05707 1796 aaKnown RBP24.14■■□□□ 1.45
PTPRU-208ENST00000493601 VPS72Q15906 364 aa24.13■■□□□ 1.45
PTPRU-208ENST00000493601 CCDC125Q86Z20 511 aa24.11■■□□□ 1.45
PTPRU-208ENST00000493601 CCDC9Q9Y3X0 531 aaKnown RBP24.1■■□□□ 1.45
PTPRU-208ENST00000493601 NUDT16Q96DE0 195 aaKnown RBP24.09■■□□□ 1.45
PTPRU-208ENST00000493601 FAM83GA6ND36 823 aa24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms