RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 ITPRIPQ8IWB1 547 aa7.76□□□□□ -1.17
VPS13D-209ENST00000487188 NGEFQ8N5V2 710 aa7.76□□□□□ -1.17
VPS13D-209ENST00000487188 CAMSAP2Q08AD1 1489 aa7.76□□□□□ -1.17
VPS13D-209ENST00000487188 E9PCH4 1651 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 ZNF521Q96K83 1311 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 MAP3K4Q9Y6R4 1608 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 NLRP1Q9C000 1473 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 MCTP1Q6DN14 999 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 SASS6Q6UVJ0 657 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 PPP1R9BQ96SB3 815 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 PRDM4Q9UKN5 801 aa7.75□□□□□ -1.17
VPS13D-209ENST00000487188 CCDC39Q9UFE4 941 aa7.74□□□□□ -1.17
VPS13D-209ENST00000487188 CDK11BP21127 795 aaKnown RBP7.74□□□□□ -1.17
VPS13D-209ENST00000487188 ASXL2Q76L83 1435 aa7.74□□□□□ -1.17
VPS13D-209ENST00000487188 SSFA2P28290 1259 aa7.74□□□□□ -1.17
VPS13D-209ENST00000487188 RAB3GAP1Q15042 981 aa7.74□□□□□ -1.17
VPS13D-209ENST00000487188 ZKSCAN2Q63HK3 967 aa7.74□□□□□ -1.17
VPS13D-209ENST00000487188 TRHP20396 242 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-209ENST00000487188 PDE4CQ08493 712 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 KIAA2012Q0VF49 1180 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 SMC4Q9NTJ3 1288 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 RAPGEF6Q8TEU7 1601 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 ZMYM3Q14202 1370 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 K7ELQ4 463 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-209ENST00000487188 RARSP54136 660 aaKnown RBP7.73□□□□□ -1.17
VPS13D-209ENST00000487188 KLHL40Q2TBA0 621 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 SMC5Q8IY18 1101 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 DZIP1LQ8IYY4 767 aaKnown RBP7.73□□□□□ -1.17
VPS13D-209ENST00000487188 PRAG1Q86YV5 1406 aa7.73□□□□□ -1.17
VPS13D-209ENST00000487188 TESK2Q96S53 571 aa7.72□□□□□ -1.17
VPS13D-209ENST00000487188 TNNQ9UQP3 1299 aa7.72□□□□□ -1.17
VPS13D-209ENST00000487188 FGD1P98174 961 aa7.72□□□□□ -1.17
VPS13D-209ENST00000487188 MVPQ14764 893 aaKnown RBP7.72□□□□□ -1.17
VPS13D-209ENST00000487188 HS1BP3Q53T59 392 aa7.72□□□□□ -1.17
VPS13D-209ENST00000487188 WWC1Q8IX03 1113 aa7.72□□□□□ -1.17
VPS13D-209ENST00000487188 CCDC94Q9BW85 323 aaPredicted RBP7.72□□□□□ -1.17
VPS13D-209ENST00000487188 RLBP1P12271 317 aa7.71□□□□□ -1.17
VPS13D-209ENST00000487188 TRMT2AQ8IZ69 625 aaKnown RBP7.71□□□□□ -1.17
VPS13D-209ENST00000487188 SNX21Q969T3 373 aa7.71□□□□□ -1.17
VPS13D-209ENST00000487188 LNPKQ9C0E8 428 aa7.71□□□□□ -1.17
VPS13D-209ENST00000487188 NOL7Q9UMY1 257 aaKnown RBP7.71□□□□□ -1.17
VPS13D-209ENST00000487188 ZKSCAN5Q9Y2L8 839 aa7.71□□□□□ -1.17
VPS13D-209ENST00000487188 AMER1Q5JTC6 1135 aaPredicted RBP7.71□□□□□ -1.18
VPS13D-209ENST00000487188 BBXQ8WY36 941 aaPredicted RBP7.71□□□□□ -1.18
VPS13D-209ENST00000487188 DMRT2Q9Y5R5 561 aa7.71□□□□□ -1.18
VPS13D-209ENST00000487188 ADGBQ8N7X0 1667 aa7.71□□□□□ -1.18
VPS13D-209ENST00000487188 SLC24A1O60721 1099 aa7.71□□□□□ -1.18
VPS13D-209ENST00000487188 CBX1P83916 185 aa7.71□□□□□ -1.18
VPS13D-209ENST00000487188 C9orf84Q5VXU9 1444 aa7.71□□□□□ -1.18
VPS13D-209ENST00000487188 BAG4O95429 457 aaKnown RBP7.7□□□□□ -1.18
VPS13D-209ENST00000487188 NUCB2P80303 420 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 RNF214Q8ND24 703 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 CFAP53Q96M91 514 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 DDX19BQ9UMR2 479 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 ATP10BO94823 1461 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 NUP153P49790 1475 aaKnown RBP7.7□□□□□ -1.18
VPS13D-209ENST00000487188 CHAF1AQ13111 956 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-209ENST00000487188 WDR7Q9Y4E6 1490 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 TSPOAP1O95153 1857 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 ZNF500O60304 480 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-209ENST00000487188 MCM5P33992 734 aa7.7□□□□□ -1.18
VPS13D-209ENST00000487188 ZSCAN23Q3MJ62 389 aa7.69□□□□□ -1.18
VPS13D-209ENST00000487188 PIK3C2GO75747 1445 aa7.69□□□□□ -1.18
VPS13D-209ENST00000487188 PLEKHD1A6NEE1 506 aa7.69□□□□□ -1.18
VPS13D-209ENST00000487188 MORC1Q86VD1 984 aa7.69□□□□□ -1.18
VPS13D-209ENST00000487188 ZNF692Q9BU19 519 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-209ENST00000487188 DMTNQ08495 405 aa7.69□□□□□ -1.18
VPS13D-209ENST00000487188 TROQ12816 1431 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-209ENST00000487188 RUNDC1Q96C34 613 aa7.69□□□□□ -1.18
VPS13D-209ENST00000487188 PRPF40AO75400 957 aaKnown RBP7.69□□□□□ -1.18
VPS13D-209ENST00000487188 HMGN5P82970 282 aaKnown RBP7.69□□□□□ -1.18
VPS13D-209ENST00000487188 ZNF771Q7L3S4 317 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-209ENST00000487188 ASXL1Q8IXJ9 1541 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 HNRNPMP52272 730 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS13D-209ENST00000487188 PLCB2Q00722 1185 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 FOXD4L5Q5VV16 416 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-209ENST00000487188 TCP11L2Q8N4U5 519 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 FOXD4L4Q8WXT5 416 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-209ENST00000487188 UTP14CQ5TAP6 766 aaKnown RBP7.68□□□□□ -1.18
VPS13D-209ENST00000487188 RBSNQ9H1K0 784 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 ADGRL2O95490 1459 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 RBM25P49756 843 aaKnown RBP7.68□□□□□ -1.18
VPS13D-209ENST00000487188 ZNF445P59923 1031 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 FAM69CQ0P6D2 419 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 ANKRD45Q5TZF3 282 aa7.68□□□□□ -1.18
VPS13D-209ENST00000487188 SYAP1Q96A49 352 aaPredicted RBP7.67□□□□□ -1.18
VPS13D-209ENST00000487188 RBM27Q9P2N5 1060 aaKnown RBP7.67□□□□□ -1.18
VPS13D-209ENST00000487188 ITSN2Q9NZM3 1697 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 ABCA9Q8IUA7 1624 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 KIF16BQ96L93 1317 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 SYCE3A1L190 88 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 NPM1P06748 294 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS13D-209ENST00000487188 PRIM1P49642 420 aaKnown RBP7.67□□□□□ -1.18
VPS13D-209ENST00000487188 TPRNQ4KMQ1 711 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 MPNDQ8N594 471 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 GAS2L2Q8NHY3 880 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 GTPBP4Q9BZE4 634 aaKnown RBP7.67□□□□□ -1.18
VPS13D-209ENST00000487188 GPRASP1Q5JY77 1395 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 PPP4R3BQ5MIZ7 849 aa7.67□□□□□ -1.18
VPS13D-209ENST00000487188 IBTKQ9P2D0 1353 aaPredicted RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms