RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 STRCQ7RTU9 1775 aa24.4■■□□□ 1.5
UPF3A-206ENST00000480362 CHD2O14647 1828 aaKnown RBP24.4■■□□□ 1.5
UPF3A-206ENST00000480362 XRN1Q8IZH2 1706 aaKnown RBP24.39■■□□□ 1.5
UPF3A-206ENST00000480362 KCNA6P17658 529 aa24.39■■□□□ 1.49
UPF3A-206ENST00000480362 EVC2Q86UK5 1308 aa24.37■■□□□ 1.49
UPF3A-206ENST00000480362 PTCH1Q13635 1447 aa24.36■■□□□ 1.49
UPF3A-206ENST00000480362 TULP4Q9NRJ4 1543 aa24.33■■□□□ 1.49
UPF3A-206ENST00000480362 PUS7Q96PZ0 661 aaKnown RBP24.31■■□□□ 1.48
UPF3A-206ENST00000480362 CDK19Q9BWU1 502 aa24.3■■□□□ 1.48
UPF3A-206ENST00000480362 CABP2Q9NPB3 220 aa24.3■■□□□ 1.48
UPF3A-206ENST00000480362 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-206ENST00000480362 SRPK2P78362 688 aaKnown RBP24.29■■□□□ 1.48
UPF3A-206ENST00000480362 NWD1Q149M9 1564 aa24.29■■□□□ 1.48
UPF3A-206ENST00000480362 DMRT2Q9Y5R5 561 aa24.28■■□□□ 1.48
UPF3A-206ENST00000480362 WASLO00401 505 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-206ENST00000480362 PROSER2Q86WR7 435 aaPredicted RBP24.24■■□□□ 1.47
UPF3A-206ENST00000480362 RBM33Q96EV2 1170 aaKnown RBP24.23■■□□□ 1.47
UPF3A-206ENST00000480362 ADGRB2O60241 1585 aa24.23■■□□□ 1.47
UPF3A-206ENST00000480362 TMC1Q8TDI8 760 aa24.22■■□□□ 1.47
UPF3A-206ENST00000480362 PANK3Q9H999 370 aa24.22■■□□□ 1.47
UPF3A-206ENST00000480362 MYOM1P52179 1685 aa24.21■■□□□ 1.47
UPF3A-206ENST00000480362 NKTRP30414 1462 aaKnown RBP24.21■■□□□ 1.47
UPF3A-206ENST00000480362 ATAD2Q6PL18 1390 aa24.21■■□□□ 1.47
UPF3A-206ENST00000480362 STRCP1A6NGW2 1772 aa24.21■■□□□ 1.47
UPF3A-206ENST00000480362 SLC12A5Q9H2X9 1139 aa24.2■■□□□ 1.46
UPF3A-206ENST00000480362 NUDT16Q96DE0 195 aaKnown RBP24.17■■□□□ 1.46
UPF3A-206ENST00000480362 ZNF335Q9H4Z2 1342 aaPredicted RBP24.16■■□□□ 1.46
UPF3A-206ENST00000480362 C14orf37Q86TY3 774 aa24.16■■□□□ 1.46
UPF3A-206ENST00000480362 MIER1Q8N108 512 aa24.15■■□□□ 1.46
UPF3A-206ENST00000480362 ADGRL3Q9HAR2 1447 aa24.15■■□□□ 1.46
UPF3A-206ENST00000480362 NALCNQ8IZF0 1738 aa24.15■■□□□ 1.46
UPF3A-206ENST00000480362 PER1O15534 1290 aaPredicted RBP24.14■■□□□ 1.45
UPF3A-206ENST00000480362 NINLQ9Y2I6 1382 aa24.14■■□□□ 1.45
UPF3A-206ENST00000480362 PRR36Q9H6K5 1346 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 NUTM2FA1L443 756 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 ANP32CO43423 234 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 CABP1Q9NZU7 370 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 CCDC61Q9Y6R9 512 aa24.12■■□□□ 1.45
UPF3A-206ENST00000480362 TMEM94Q12767 1356 aa24.12■■□□□ 1.45
UPF3A-206ENST00000480362 CARD14Q9BXL6 1004 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 ATP7BP35670 1465 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 CDC42BPGQ6DT37 1551 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 NCOA3Q9Y6Q9 1424 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 C19orf44Q9H6X5 657 aa24.09■■□□□ 1.45
UPF3A-206ENST00000480362 KNSTRNQ9Y448 316 aa24.09■■□□□ 1.45
UPF3A-206ENST00000480362 PPIP5K1Q6PFW1 1433 aa24.09■■□□□ 1.45
UPF3A-206ENST00000480362 ANKRD36BQ8N2N9 1353 aa24.08■■□□□ 1.45
UPF3A-206ENST00000480362 FMN2Q9NZ56 1722 aa24.08■■□□□ 1.45
UPF3A-206ENST00000480362 TERF2IPQ9NYB0 399 aa24.08■■□□□ 1.45
UPF3A-206ENST00000480362 USP32Q8NFA0 1604 aa24.06■■□□□ 1.44
UPF3A-206ENST00000480362 LRRC7Q96NW7 1537 aa24.06■■□□□ 1.44
UPF3A-206ENST00000480362 CNGB1Q14028 1251 aaPredicted RBP24.06■■□□□ 1.44
UPF3A-206ENST00000480362 HDGFL2Q7Z4V5 671 aaPredicted RBP24.06■■□□□ 1.44
UPF3A-206ENST00000480362 ANKARQ7Z5J8 1434 aa24.05■■□□□ 1.44
UPF3A-206ENST00000480362 CD163L1Q9NR16 1453 aa24.05■■□□□ 1.44
UPF3A-206ENST00000480362 A0A1W2PP64 1363 aa24.04■■□□□ 1.44
UPF3A-206ENST00000480362 PLEKHG3A1L390 1219 aa24.04■■□□□ 1.44
UPF3A-206ENST00000480362 TOPAZ1Q8N9V7 1692 aa24.03■■□□□ 1.44
UPF3A-206ENST00000480362 PRKRIP1Q9H875 184 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-206ENST00000480362 NSD3Q9BZ95 1437 aa24.02■■□□□ 1.44
UPF3A-206ENST00000480362 RGPD8O14715 1765 aaPredicted RBP24.02■■□□□ 1.44
UPF3A-206ENST00000480362 XIRP1Q702N8 1843 aaKnown RBP24.02■■□□□ 1.44
UPF3A-206ENST00000480362 AMER1Q5JTC6 1135 aaPredicted RBP24.01■■□□□ 1.43
UPF3A-206ENST00000480362 CPSF1Q10570 1443 aaKnown RBP24.01■■□□□ 1.43
UPF3A-206ENST00000480362 ATF3P18847 181 aa24■■□□□ 1.43
UPF3A-206ENST00000480362 CC2D1BQ5T0F9 858 aaKnown RBP24■■□□□ 1.43
UPF3A-206ENST00000480362 ITSN1Q15811 1721 aa24■■□□□ 1.43
UPF3A-206ENST00000480362 MSH6P52701 1360 aa24■■□□□ 1.43
UPF3A-206ENST00000480362 PMFBP1Q8TBY8 1022 aa23.99■■□□□ 1.43
UPF3A-206ENST00000480362 ZNF692Q9BU19 519 aaPredicted RBP23.98■■□□□ 1.43
UPF3A-206ENST00000480362 ACEP12821 1306 aa23.98■■□□□ 1.43
UPF3A-206ENST00000480362 KTN1Q86UP2 1357 aaKnown RBP23.98■■□□□ 1.43
UPF3A-206ENST00000480362 DCCP43146 1447 aa23.98■■□□□ 1.43
UPF3A-206ENST00000480362 NPC1L1Q9UHC9 1359 aa23.96■■□□□ 1.43
UPF3A-206ENST00000480362 CADPS2Q86UW7 1296 aa23.96■■□□□ 1.43
UPF3A-206ENST00000480362 RALBP1Q15311 655 aa23.95■■□□□ 1.42
UPF3A-206ENST00000480362 ESCO1Q5FWF5 840 aa23.95■■□□□ 1.42
UPF3A-206ENST00000480362 NGDNQ8NEJ9 315 aaKnown RBP23.95■■□□□ 1.42
UPF3A-206ENST00000480362 PHF8Q9UPP1 1060 aa23.95■■□□□ 1.42
UPF3A-206ENST00000480362 AKAP12Q02952 1782 aa23.94■■□□□ 1.42
UPF3A-206ENST00000480362 CGNL1Q0VF96 1302 aa23.94■■□□□ 1.42
UPF3A-206ENST00000480362 POLR3AO14802 1390 aaPredicted RBP23.93■■□□□ 1.42
UPF3A-206ENST00000480362 LTBP4Q8N2S1 1624 aa23.93■■□□□ 1.42
UPF3A-206ENST00000480362 C1orf167Q5SNV9 1468 aa23.93■■□□□ 1.42
UPF3A-206ENST00000480362 ORAI2Q96SN7 254 aa23.92■■□□□ 1.42
UPF3A-206ENST00000480362 MST1RQ04912 1400 aa23.92■■□□□ 1.42
UPF3A-206ENST00000480362 PARD3Q8TEW0 1356 aa23.91■■□□□ 1.42
UPF3A-206ENST00000480362 CCER2I3L3R5 266 aa23.91■■□□□ 1.42
UPF3A-206ENST00000480362 EDC4Q6P2E9 1401 aaKnown RBP23.91■■□□□ 1.42
UPF3A-206ENST00000480362 MON2Q7Z3U7 1717 aa23.9■■□□□ 1.42
UPF3A-206ENST00000480362 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.9■■□□□ 1.42
UPF3A-206ENST00000480362 FYB1O15117 783 aa23.89■■□□□ 1.41
UPF3A-206ENST00000480362 USP6P35125 1406 aa23.88■■□□□ 1.41
UPF3A-206ENST00000480362 NSD2O96028 1365 aa23.87■■□□□ 1.41
UPF3A-206ENST00000480362 MYBBP1AQ9BQG0 1328 aaKnown RBP23.86■■□□□ 1.41
UPF3A-206ENST00000480362 MORC1Q86VD1 984 aa23.86■■□□□ 1.41
UPF3A-206ENST00000480362 GGNBP2Q9H3C7 697 aa23.86■■□□□ 1.41
UPF3A-206ENST00000480362 TTC21BQ7Z4L5 1316 aa23.85■■□□□ 1.41
UPF3A-206ENST00000480362 SLAIN2Q9P270 581 aa23.84■■□□□ 1.41
UPF3A-206ENST00000480362 SSH2Q76I76 1423 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms