RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 NISCHQ9Y2I1 1504 aa40.84■■■■■ 4.13
UPF3A-206ENST00000480362 CCDC180Q9P1Z9 1646 aa35.83■■■■□ 3.33
UPF3A-206ENST00000480362 ABCC9O60706 1549 aa34.32■■■■□ 3.08
UPF3A-206ENST00000480362 ZCCHC6Q5VYS8 1495 aaKnown RBP34.19■■■■□ 3.06
UPF3A-206ENST00000480362 DCAF8L2P0C7V8 631 aa33.92■■■■□ 3.02
UPF3A-206ENST00000480362 DCAF1Q9Y4B6 1507 aa33.77■■■■□ 3
UPF3A-206ENST00000480362 MYO15BQ96JP2 1530 aa33.56■■■□□ 2.96
UPF3A-206ENST00000480362 NACADO15069 1562 aa33.51■■■□□ 2.95
UPF3A-206ENST00000480362 RB1CC1Q8TDY2 1594 aa33.33■■■□□ 2.93
UPF3A-206ENST00000480362 SHROOM4Q9ULL8 1493 aa32.96■■■□□ 2.87
UPF3A-206ENST00000480362 SCRIBQ14160 1630 aa32.87■■■□□ 2.85
UPF3A-206ENST00000480362 UNC13AQ9UPW8 1703 aa32.6■■■□□ 2.81
UPF3A-206ENST00000480362 BICRAQ9NZM4 1560 aa32.31■■■□□ 2.76
UPF3A-206ENST00000480362 PABPN1Q86U42 306 aaKnown RBP eCLIP32.29■■■□□ 2.76
UPF3A-206ENST00000480362 CECR2Q9BXF3 1484 aa31.77■■■□□ 2.68
UPF3A-206ENST00000480362 BAZ1AQ9NRL2 1556 aaPredicted RBP31.57■■■□□ 2.64
UPF3A-206ENST00000480362 MROH2BQ7Z745 1585 aa31.52■■■□□ 2.64
UPF3A-206ENST00000480362 SUPT5HO00267 1087 aaKnown RBP31.5■■■□□ 2.63
UPF3A-206ENST00000480362 RSF1Q96T23 1441 aaPredicted RBP31.49■■■□□ 2.63
UPF3A-206ENST00000480362 SMARCA4P51532 1647 aa31.48■■■□□ 2.63
UPF3A-206ENST00000480362 EIF4G1Q04637 1599 aaKnown RBP31.38■■■□□ 2.61
UPF3A-206ENST00000480362 WIZO95785 1651 aa31.24■■■□□ 2.59
UPF3A-206ENST00000480362 PEG3Q9GZU2 1588 aa31.13■■■□□ 2.57
UPF3A-206ENST00000480362 ATAD2BQ9ULI0 1458 aa31.1■■■□□ 2.57
UPF3A-206ENST00000480362 SMARCA2P51531 1590 aa31.07■■■□□ 2.56
UPF3A-206ENST00000480362 CC2D2AQ9P2K1 1620 aa31.04■■■□□ 2.56
UPF3A-206ENST00000480362 NCAPD3P42695 1498 aa30.93■■■□□ 2.54
UPF3A-206ENST00000480362 TOP2AP11388 1531 aaKnown RBP30.91■■■□□ 2.54
UPF3A-206ENST00000480362 BAZ1BQ9UIG0 1483 aaKnown RBP30.89■■■□□ 2.54
UPF3A-206ENST00000480362 HMGXB3Q12766 1538 aa30.82■■■□□ 2.52
UPF3A-206ENST00000480362 DNAJC5BQ9UF47 199 aa30.73■■■□□ 2.51
UPF3A-206ENST00000480362 CCDC88BA6NC98 1476 aa30.6■■■□□ 2.49
UPF3A-206ENST00000480362 CADPSQ9ULU8 1353 aa30.11■■■□□ 2.41
UPF3A-206ENST00000480362 CFTRP13569 1480 aa30.09■■■□□ 2.41
UPF3A-206ENST00000480362 NESP48681 1621 aa29.97■■■□□ 2.39
UPF3A-206ENST00000480362 LAMC3Q9Y6N6 1575 aa29.94■■■□□ 2.38
UPF3A-206ENST00000480362 CHIC1Q5VXU3 224 aa29.91■■■□□ 2.38
UPF3A-206ENST00000480362 PRDM2Q13029 1718 aa29.89■■■□□ 2.38
UPF3A-206ENST00000480362 ABCC8Q09428 1581 aa29.77■■■□□ 2.36
UPF3A-206ENST00000480362 FANCD2Q9BXW9 1451 aa29.75■■■□□ 2.35
UPF3A-206ENST00000480362 PDS5BQ9NTI5 1447 aa29.74■■■□□ 2.35
UPF3A-206ENST00000480362 TRIM41Q8WV44 630 aa29.67■■■□□ 2.34
UPF3A-206ENST00000480362 WRNQ14191 1432 aaPredicted RBP eCLIP29.66■■■□□ 2.34
UPF3A-206ENST00000480362 CEP164Q9UPV0 1460 aa29.61■■■□□ 2.33
UPF3A-206ENST00000480362 KIF21AQ7Z4S6 1674 aa29.6■■■□□ 2.33
UPF3A-206ENST00000480362 SYNJ1O43426 1573 aa29.54■■■□□ 2.32
UPF3A-206ENST00000480362 CUX1P39880 1505 aa29.5■■■□□ 2.31
UPF3A-206ENST00000480362 ERCC6Q03468 1493 aa29.48■■■□□ 2.31
UPF3A-206ENST00000480362 TOP2BQ02880 1626 aa29.47■■■□□ 2.31
UPF3A-206ENST00000480362 BIVM-ERCC5R4GMW8 1640 aa29.44■■■□□ 2.3
UPF3A-206ENST00000480362 URB2Q14146 1524 aaKnown RBP29.4■■■□□ 2.3
UPF3A-206ENST00000480362 DNMBPQ6XZF7 1577 aa29.39■■■□□ 2.3
UPF3A-206ENST00000480362 MRC2Q9UBG0 1479 aa29.38■■■□□ 2.29
UPF3A-206ENST00000480362 TOPBP1Q92547 1522 aa29.38■■■□□ 2.29
UPF3A-206ENST00000480362 FGD5Q6ZNL6 1462 aa29.27■■■□□ 2.28
UPF3A-206ENST00000480362 THOC2Q8NI27 1593 aaKnown RBP29.23■■■□□ 2.27
UPF3A-206ENST00000480362 WDR62O43379 1518 aa29.23■■■□□ 2.27
UPF3A-206ENST00000480362 POLA1P09884 1462 aaPredicted RBP29.18■■■□□ 2.26
UPF3A-206ENST00000480362 SOGA1O94964 1423 aa29.13■■■□□ 2.25
UPF3A-206ENST00000480362 RAD54L2Q9Y4B4 1467 aa29.1■■■□□ 2.25
UPF3A-206ENST00000480362 FAM9AQ8IZU1 332 aaPredicted RBP29.1■■■□□ 2.25
UPF3A-206ENST00000480362 RUSC2Q8N2Y8 1516 aa29.05■■■□□ 2.24
UPF3A-206ENST00000480362 CUX2O14529 1486 aa29.04■■■□□ 2.24
UPF3A-206ENST00000480362 ABCA10Q8WWZ4 1543 aa29■■■□□ 2.23
UPF3A-206ENST00000480362 EEA1Q15075 1411 aa28.99■■■□□ 2.23
UPF3A-206ENST00000480362 TARBP1Q13395 1621 aaKnown RBP28.97■■■□□ 2.23
UPF3A-206ENST00000480362 KIF27Q86VH2 1401 aa28.96■■■□□ 2.23
UPF3A-206ENST00000480362 IFT140Q96RY7 1462 aa28.95■■■□□ 2.22
UPF3A-206ENST00000480362 WDR97A6NE52 1622 aa28.92■■■□□ 2.22
UPF3A-206ENST00000480362 CSRNP3Q8WYN3 585 aa28.91■■■□□ 2.22
UPF3A-206ENST00000480362 TDRD9Q8NDG6 1382 aaKnown RBP28.88■■■□□ 2.21
UPF3A-206ENST00000480362 ABCA5Q8WWZ7 1642 aa28.79■■■□□ 2.2
UPF3A-206ENST00000480362 ZNF608Q9ULD9 1512 aaPredicted RBP28.79■■■□□ 2.2
UPF3A-206ENST00000480362 GAPVD1Q14C86 1478 aa28.78■■■□□ 2.2
UPF3A-206ENST00000480362 AQRO60306 1485 aaKnown RBP eCLIP28.77■■■□□ 2.23e-6■□□□□ 10.3
UPF3A-206ENST00000480362 IGF1RP08069 1367 aa28.76■■■□□ 2.2
UPF3A-206ENST00000480362 LOC105371045A0A1W2PR82 267 aa28.75■■■□□ 2.19
UPF3A-206ENST00000480362 EHMT2Q96KQ7 1210 aa28.69■■■□□ 2.18
UPF3A-206ENST00000480362 EIF4G3O43432 1585 aaKnown RBP28.67■■■□□ 2.18
UPF3A-206ENST00000480362 ERICH3Q5RHP9 1530 aa28.65■■■□□ 2.18
UPF3A-206ENST00000480362 PRXQ9BXM0 1461 aa28.64■■■□□ 2.17
UPF3A-206ENST00000480362 GRIN2BQ13224 1484 aa28.63■■■□□ 2.17
UPF3A-206ENST00000480362 PBRM1Q86U86 1689 aa28.63■■■□□ 2.17
UPF3A-206ENST00000480362 KIF21BO75037 1637 aa28.62■■■□□ 2.17
UPF3A-206ENST00000480362 CARMIL1Q5VZK9 1371 aa28.62■■■□□ 2.17
UPF3A-206ENST00000480362 CUL7Q14999 1698 aa28.56■■■□□ 2.16
UPF3A-206ENST00000480362 GOLGA3Q08378 1498 aa28.55■■■□□ 2.16
UPF3A-206ENST00000480362 RAPGEF2Q9Y4G8 1499 aa28.55■■■□□ 2.16
UPF3A-206ENST00000480362 UBTFP17480 764 aaKnown RBP28.49■■■□□ 2.15
UPF3A-206ENST00000480362 SNAPC4Q5SXM2 1469 aa28.48■■■□□ 2.15
UPF3A-206ENST00000480362 FHAD1B1AJZ9 1412 aa28.46■■■□□ 2.15
UPF3A-206ENST00000480362 ADAMTS12P58397 1594 aa28.45■■■□□ 2.14
UPF3A-206ENST00000480362 MAGI1Q96QZ7 1491 aaPredicted RBP28.44■■■□□ 2.14
UPF3A-206ENST00000480362 TNIKQ9UKE5 1360 aa28.39■■■□□ 2.14
UPF3A-206ENST00000480362 SYNJ2O15056 1496 aa28.34■■■□□ 2.13
UPF3A-206ENST00000480362 CHMP7Q8WUX9 453 aaPredicted RBP28.33■■■□□ 2.13
UPF3A-206ENST00000480362 FBLN2P98095 1184 aa28.29■■■□□ 2.12
UPF3A-206ENST00000480362 GRIN2AQ12879 1464 aa28.27■■■□□ 2.12
UPF3A-206ENST00000480362 CEP162Q5TB80 1403 aa28.18■■■□□ 2.1
UPF3A-206ENST00000480362 CTTNBP2Q8WZ74 1663 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 165.4 ms