RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 ATP1B4Q9UN42 357 aaPredicted RBP7.71□□□□□ -1.18
PTCD3-213ENST00000480102 REREQ9P2R6 1566 aa7.71□□□□□ -1.18
PTCD3-213ENST00000480102 CCNB3Q8WWL7 1395 aa7.71□□□□□ -1.18
PTCD3-213ENST00000480102 RTEL1-TNFRSF6BF6WH68 1400 aa7.7□□□□□ -1.18
PTCD3-213ENST00000480102 C6orf132Q5T0Z8 1188 aa7.7□□□□□ -1.18
PTCD3-213ENST00000480102 MYT1LQ9UL68 1186 aa7.7□□□□□ -1.18
PTCD3-213ENST00000480102 VPS9D1Q9Y2B5 631 aa7.7□□□□□ -1.18
PTCD3-213ENST00000480102 FRMPD1Q5SYB0 1578 aa7.7□□□□□ -1.18
PTCD3-213ENST00000480102 ABCC1P33527 1531 aa7.69□□□□□ -1.18
PTCD3-213ENST00000480102 ARHGEF40Q8TER5 1519 aa7.69□□□□□ -1.18
PTCD3-213ENST00000480102 TIAM1Q13009 1591 aa7.69□□□□□ -1.18
PTCD3-213ENST00000480102 MAP3K7O43318 606 aa7.69□□□□□ -1.18
PTCD3-213ENST00000480102 HRO43593 1189 aa7.69□□□□□ -1.18
PTCD3-213ENST00000480102 COL9A1P20849 921 aa7.69□□□□□ -1.18
PTCD3-213ENST00000480102 OSBPP22059 807 aa7.69□□□□□ -1.18
PTCD3-213ENST00000480102 CFDP1Q9UEE9 299 aaPredicted RBP7.69□□□□□ -1.18
PTCD3-213ENST00000480102 ATP10AO60312 1499 aa7.68□□□□□ -1.18
PTCD3-213ENST00000480102 AGLP35573 1532 aa7.68□□□□□ -1.18
PTCD3-213ENST00000480102 ARHGAP5Q13017 1502 aa7.68□□□□□ -1.18
PTCD3-213ENST00000480102 PREX2Q70Z35 1606 aa7.68□□□□□ -1.18
PTCD3-213ENST00000480102 MLLT3P42568 568 aaPredicted RBP7.68□□□□□ -1.18
PTCD3-213ENST00000480102 PRIM1P49642 420 aaKnown RBP7.68□□□□□ -1.18
PTCD3-213ENST00000480102 TSR1Q2NL82 804 aaKnown RBP7.68□□□□□ -1.18
PTCD3-213ENST00000480102 NCOA2Q15596 1464 aa7.68□□□□□ -1.18
PTCD3-213ENST00000480102 MBD5Q9P267 1494 aa7.68□□□□□ -1.18
PTCD3-213ENST00000480102 RNF166Q96A37 237 aaPredicted RBP7.67□□□□□ -1.18
PTCD3-213ENST00000480102 C9orf84Q5VXU9 1444 aa7.67□□□□□ -1.18
PTCD3-213ENST00000480102 ZFYVE16Q7Z3T8 1539 aa7.67□□□□□ -1.18
PTCD3-213ENST00000480102 SEMA3EO15041 775 aa7.66□□□□□ -1.18
PTCD3-213ENST00000480102 ARHGEF12Q9NZN5 1544 aa7.66□□□□□ -1.18
PTCD3-213ENST00000480102 BHMG1C9JSJ3 638 aaPredicted RBP7.65□□□□□ -1.18
PTCD3-213ENST00000480102 PROX2Q3B8N5 592 aa7.65□□□□□ -1.18
PTCD3-213ENST00000480102 RICTORQ6R327 1708 aa7.65□□□□□ -1.18
PTCD3-213ENST00000480102 AFAP1Q8N556 730 aa7.65□□□□□ -1.18
PTCD3-213ENST00000480102 MYO5CQ9NQX4 1742 aa7.65□□□□□ -1.18
PTCD3-213ENST00000480102 TRAPPC8Q9Y2L5 1435 aa7.65□□□□□ -1.18
PTCD3-213ENST00000480102 LRRIQ1Q96JM4 1722 aa7.64□□□□□ -1.19
PTCD3-213ENST00000480102 FAM135AQ9P2D6 1515 aa7.64□□□□□ -1.19
PTCD3-213ENST00000480102 MYOM3Q5VTT5 1437 aa7.64□□□□□ -1.19
PTCD3-213ENST00000480102 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.64□□□□□ -1.19
PTCD3-213ENST00000480102 CCDC141Q6ZP82 1450 aa7.63□□□□□ -1.19
PTCD3-213ENST00000480102 YEATS2Q9ULM3 1422 aa7.63□□□□□ -1.19
PTCD3-213ENST00000480102 CERKQ8TCT0 537 aa7.63□□□□□ -1.19
PTCD3-213ENST00000480102 CDHR5Q9HBB8 845 aa7.63□□□□□ -1.19
PTCD3-213ENST00000480102 RABGEF1Q9UJ41 708 aa7.63□□□□□ -1.19
PTCD3-213ENST00000480102 TSPOAP1O95153 1857 aa7.63□□□□□ -1.19
PTCD3-213ENST00000480102 CNTLNQ9NXG0 1405 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 SPAG9O60271 1321 aaKnown RBP7.62□□□□□ -1.19
PTCD3-213ENST00000480102 TESPA1A2RU30 521 aaPredicted RBP7.62□□□□□ -1.19
PTCD3-213ENST00000480102 TRIM6-TRIM34B2RNG4 842 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 ONECUT3O60422 494 aaPredicted RBP7.62□□□□□ -1.19
PTCD3-213ENST00000480102 KANK4Q5T7N3 995 aaPredicted RBP7.62□□□□□ -1.19
PTCD3-213ENST00000480102 STAC3Q96MF2 364 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 NBPF3Q9H094 633 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 ARHGEF5Q12774 1597 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 SAMD9LQ8IVG5 1584 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 HECW2Q9P2P5 1572 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 SHANK2Q9UPX8 1470 aa7.62□□□□□ -1.19
PTCD3-213ENST00000480102 SUPT6HQ7KZ85 1726 aaKnown RBP7.61□□□□□ -1.19
PTCD3-213ENST00000480102 DHX29Q7Z478 1369 aaKnown RBP7.61□□□□□ -1.19
PTCD3-213ENST00000480102 TCOF1Q13428 1488 aaKnown RBP7.61□□□□□ -1.19
PTCD3-213ENST00000480102 CDC42BPBQ9Y5S2 1711 aa7.61□□□□□ -1.19
PTCD3-213ENST00000480102 ITSN2Q9NZM3 1697 aa7.6□□□□□ -1.19
PTCD3-213ENST00000480102 PLXNC1O60486 1568 aa7.6□□□□□ -1.19
PTCD3-213ENST00000480102 TSPY4P0CV99 314 aa7.6□□□□□ -1.19
PTCD3-213ENST00000480102 TSPY10P0CW01 314 aa7.6□□□□□ -1.19
PTCD3-213ENST00000480102 MRPL50Q8N5N7 158 aaKnown RBP7.6□□□□□ -1.19
PTCD3-213ENST00000480102 SYCP2Q9BX26 1530 aa7.6□□□□□ -1.19
PTCD3-213ENST00000480102 ADAMTSL3P82987 1691 aa7.6□□□□□ -1.19
PTCD3-213ENST00000480102 INO80Q9ULG1 1556 aaPredicted RBP7.59□□□□□ -1.19
PTCD3-213ENST00000480102 DIP2CQ9Y2E4 1556 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 CDC42BPAQ5VT25 1732 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 HNRNPMP52272 730 aaKnown RBP eCLIP7.59□□□□□ -1.19
PTCD3-213ENST00000480102 CDCA7LQ96GN5 454 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 KIAA1468Q9P260 1216 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 RBM27Q9P2N5 1060 aaKnown RBP7.59□□□□□ -1.19
PTCD3-213ENST00000480102 TSKSQ9UJT2 592 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 PTPRMP28827 1452 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 NPATQ14207 1427 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 FGD6Q6ZV73 1430 aa7.59□□□□□ -1.19
PTCD3-213ENST00000480102 MAST1Q9Y2H9 1570 aa7.59□□□□□ -1.2
PTCD3-213ENST00000480102 ATP7AQ04656 1500 aa7.58□□□□□ -1.2
PTCD3-213ENST00000480102 A2MP01023 1474 aa7.58□□□□□ -1.2
PTCD3-213ENST00000480102 CAMSAP2Q08AD1 1489 aa7.58□□□□□ -1.2
PTCD3-213ENST00000480102 PRSS12P56730 875 aa7.58□□□□□ -1.2
PTCD3-213ENST00000480102 NPDC1Q9NQX5 325 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-213ENST00000480102 ZNF644Q9H582 1327 aaPredicted RBP7.57□□□□□ -1.2
PTCD3-213ENST00000480102 SMYD5Q6GMV2 418 aa7.57□□□□□ -1.2
PTCD3-213ENST00000480102 LAPTM4BQ86VI4 370 aa7.57□□□□□ -1.2
PTCD3-213ENST00000480102 ZNF777Q9ULD5 760 aaPredicted RBP7.57□□□□□ -1.2
PTCD3-213ENST00000480102 BCORL1Q5H9F3 1711 aa7.57□□□□□ -1.2
PTCD3-213ENST00000480102 ARID4BQ4LE39 1312 aaPredicted RBP7.56□□□□□ -1.2
PTCD3-213ENST00000480102 PACS2Q86VP3 889 aa7.56□□□□□ -1.2
PTCD3-213ENST00000480102 KCTD12Q96CX2 325 aaKnown RBP7.56□□□□□ -1.2
PTCD3-213ENST00000480102 ABCC5O15440 1437 aa7.55□□□□□ -1.2
PTCD3-213ENST00000480102 ERBINQ96RT1 1412 aa7.55□□□□□ -1.2
PTCD3-213ENST00000480102 GOLGA8CPA6NN73 597 aa7.55□□□□□ -1.2
PTCD3-213ENST00000480102 PTGDRQ13258 359 aa7.55□□□□□ -1.2
PTCD3-213ENST00000480102 FAM198AQ9UFP1 575 aa7.55□□□□□ -1.2
PTCD3-213ENST00000480102 SEPT9Q9UHD8 586 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms