RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 CABP2Q9NPB3 220 aa24.64■■□□□ 1.54
SMC4-211ENST00000469858 ZNF142P52746 1687 aaPredicted RBP24.64■■□□□ 1.53
SMC4-211ENST00000469858 AMER1Q5JTC6 1135 aaPredicted RBP24.63■■□□□ 1.53
SMC4-211ENST00000469858 WAPLQ7Z5K2 1190 aa24.63■■□□□ 1.53
SMC4-211ENST00000469858 PLEKHH1Q9ULM0 1364 aa24.63■■□□□ 1.53
SMC4-211ENST00000469858 SLC12A5Q9H2X9 1139 aa24.62■■□□□ 1.53
SMC4-211ENST00000469858 SETD1BQ9UPS6 1966 aaKnown RBP24.62■■□□□ 1.53
SMC4-211ENST00000469858 SRPK2P78362 688 aaKnown RBP24.62■■□□□ 1.53
SMC4-211ENST00000469858 BRD4O60885 1362 aaPredicted RBP24.62■■□□□ 1.53
SMC4-211ENST00000469858 CPS1P31327 1500 aa24.61■■□□□ 1.53
SMC4-211ENST00000469858 CARD14Q9BXL6 1004 aa24.6■■□□□ 1.53
SMC4-211ENST00000469858 TECPR2O15040 1411 aa24.6■■□□□ 1.53
SMC4-211ENST00000469858 HNRNPUQ00839 825 aaKnown RBP eCLIP24.6■■□□□ 1.532e-22■■■■■ 68.1
SMC4-211ENST00000469858 NLRP13Q86W25 1043 aa24.6■■□□□ 1.53
SMC4-211ENST00000469858 MED14O60244 1454 aa24.59■■□□□ 1.53
SMC4-211ENST00000469858 SLC26A8Q96RN1 970 aa24.59■■□□□ 1.53
SMC4-211ENST00000469858 NPC1L1Q9UHC9 1359 aa24.57■■□□□ 1.52
SMC4-211ENST00000469858 FAM135BQ49AJ0 1406 aa24.57■■□□□ 1.52
SMC4-211ENST00000469858 NSD3Q9BZ95 1437 aa24.56■■□□□ 1.52
SMC4-211ENST00000469858 ATAD2Q6PL18 1390 aa24.56■■□□□ 1.52
SMC4-211ENST00000469858 CDK19Q9BWU1 502 aa24.55■■□□□ 1.52
SMC4-211ENST00000469858 DIP2AQ14689 1571 aa24.55■■□□□ 1.52
SMC4-211ENST00000469858 PNISRQ8TF01 805 aaKnown RBP24.53■■□□□ 1.52
SMC4-211ENST00000469858 SIRT1Q96EB6 747 aa24.53■■□□□ 1.52
SMC4-211ENST00000469858 ANKRD36BQ8N2N9 1353 aa24.53■■□□□ 1.52
SMC4-211ENST00000469858 NINLQ9Y2I6 1382 aa24.53■■□□□ 1.52
SMC4-211ENST00000469858 ROBO2Q9HCK4 1378 aa24.52■■□□□ 1.52
SMC4-211ENST00000469858 PTPRUQ92729 1446 aa24.51■■□□□ 1.51
SMC4-211ENST00000469858 TBX22Q9Y458 520 aa24.51■■□□□ 1.51
SMC4-211ENST00000469858 USP32Q8NFA0 1604 aa24.51■■□□□ 1.51
SMC4-211ENST00000469858 SCAF1Q9H7N4 1312 aaKnown RBP24.49■■□□□ 1.51
SMC4-211ENST00000469858 PPP2R1AP30153 589 aa24.48■■□□□ 1.51
SMC4-211ENST00000469858 A0A1W2PP64 1363 aa24.47■■□□□ 1.51
SMC4-211ENST00000469858 ANKLE2Q86XL3 938 aa24.47■■□□□ 1.51
SMC4-211ENST00000469858 WASLO00401 505 aaPredicted RBP24.46■■□□□ 1.51
SMC4-211ENST00000469858 AMOTL2Q9Y2J4 779 aa24.45■■□□□ 1.51
SMC4-211ENST00000469858 GTF3C3Q9Y5Q9 886 aa24.45■■□□□ 1.51
SMC4-211ENST00000469858 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.45■■□□□ 1.5
SMC4-211ENST00000469858 CGNL1Q0VF96 1302 aa24.44■■□□□ 1.5
SMC4-211ENST00000469858 CD163L1Q9NR16 1453 aa24.44■■□□□ 1.5
SMC4-211ENST00000469858 TERF2IPQ9NYB0 399 aa24.43■■□□□ 1.5
SMC4-211ENST00000469858 XRN1Q8IZH2 1706 aaKnown RBP24.43■■□□□ 1.5
SMC4-211ENST00000469858 CABP1Q9NZU7 370 aa24.42■■□□□ 1.5
SMC4-211ENST00000469858 ADGRB2O60241 1585 aa24.42■■□□□ 1.5
SMC4-211ENST00000469858 PTCH1Q13635 1447 aa24.42■■□□□ 1.5
SMC4-211ENST00000469858 HDGFL2Q7Z4V5 671 aaPredicted RBP24.39■■□□□ 1.49
SMC4-211ENST00000469858 MORC1Q86VD1 984 aa24.39■■□□□ 1.49
SMC4-211ENST00000469858 ZBED9Q6R2W3 1325 aa24.39■■□□□ 1.49
SMC4-211ENST00000469858 PIK3R4Q99570 1358 aa24.38■■□□□ 1.49
SMC4-211ENST00000469858 ATP7BP35670 1465 aa24.38■■□□□ 1.49
SMC4-211ENST00000469858 NSD2O96028 1365 aa24.38■■□□□ 1.49
SMC4-211ENST00000469858 PPIP5K1Q6PFW1 1433 aa24.38■■□□□ 1.49
SMC4-211ENST00000469858 NUDT16Q96DE0 195 aaKnown RBP24.36■■□□□ 1.49
SMC4-211ENST00000469858 CHD2O14647 1828 aaKnown RBP24.35■■□□□ 1.49
SMC4-211ENST00000469858 ANKRD26Q9UPS8 1709 aa24.34■■□□□ 1.49
SMC4-211ENST00000469858 KCNA6P17658 529 aa24.34■■□□□ 1.49
SMC4-211ENST00000469858 TNNT2P45379 298 aaPredicted RBP24.34■■□□□ 1.49
SMC4-211ENST00000469858 KIF20BQ96Q89 1820 aa24.34■■□□□ 1.49
SMC4-211ENST00000469858 NPHP4O75161 1426 aaPredicted RBP24.33■■□□□ 1.49
SMC4-211ENST00000469858 CCDC61Q9Y6R9 512 aa24.33■■□□□ 1.48
SMC4-211ENST00000469858 PRR36Q9H6K5 1346 aa24.32■■□□□ 1.48
SMC4-211ENST00000469858 NCKAP5LQ9HCH0 1330 aa24.32■■□□□ 1.48
SMC4-211ENST00000469858 ITSN1Q15811 1721 aa24.32■■□□□ 1.48
SMC4-211ENST00000469858 SENP3-EIF4A1A0A087X0R7 540 aa24.31■■□□□ 1.48
SMC4-211ENST00000469858 CDC42BPGQ6DT37 1551 aa24.31■■□□□ 1.48
SMC4-211ENST00000469858 TOPAZ1Q8N9V7 1692 aa24.3■■□□□ 1.48
SMC4-211ENST00000469858 GGNBP2Q9H3C7 697 aa24.29■■□□□ 1.48
SMC4-211ENST00000469858 AKAP12Q02952 1782 aa24.29■■□□□ 1.48
SMC4-211ENST00000469858 CPSF1Q10570 1443 aaKnown RBP24.29■■□□□ 1.48
SMC4-211ENST00000469858 WDR43Q15061 677 aaKnown RBP eCLIP24.29■■□□□ 1.485e-20■■■■■ 85.2
SMC4-211ENST00000469858 MON2Q7Z3U7 1717 aa24.28■■□□□ 1.48
SMC4-211ENST00000469858 NUTM2FA1L443 756 aa24.28■■□□□ 1.48
SMC4-211ENST00000469858 FYB1O15117 783 aa24.27■■□□□ 1.48
SMC4-211ENST00000469858 BLMP54132 1417 aaPredicted RBP24.27■■□□□ 1.48
SMC4-211ENST00000469858 INSRP06213 1382 aa24.26■■□□□ 1.47
SMC4-211ENST00000469858 ADAMTS8Q9UP79 889 aa24.26■■□□□ 1.47
SMC4-211ENST00000469858 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.25■■□□□ 1.476e-65■■■■■ 143.5
SMC4-211ENST00000469858 POLR3AO14802 1390 aaPredicted RBP24.24■■□□□ 1.47
SMC4-211ENST00000469858 EDC4Q6P2E9 1401 aaKnown RBP24.24■■□□□ 1.47
SMC4-211ENST00000469858 RGPD8O14715 1765 aaPredicted RBP24.23■■□□□ 1.47
SMC4-211ENST00000469858 NALCNQ8IZF0 1738 aa24.22■■□□□ 1.47
SMC4-211ENST00000469858 MTHFSP49914 203 aa24.22■■□□□ 1.47
SMC4-211ENST00000469858 NKTRP30414 1462 aaKnown RBP24.21■■□□□ 1.47
SMC4-211ENST00000469858 KDM4FA0A1W2PPD8 638 aa24.2■■□□□ 1.46
SMC4-211ENST00000469858 SHPRHQ149N8 1683 aa24.2■■□□□ 1.46
SMC4-211ENST00000469858 FMN2Q9NZ56 1722 aa24.19■■□□□ 1.46
SMC4-211ENST00000469858 ZNF692Q9BU19 519 aaPredicted RBP24.18■■□□□ 1.46
SMC4-211ENST00000469858 SALL2Q9Y467 1007 aaPredicted RBP24.18■■□□□ 1.46
SMC4-211ENST00000469858 ACEP12821 1306 aa24.17■■□□□ 1.46
SMC4-211ENST00000469858 PLEKHG3A1L390 1219 aa24.17■■□□□ 1.46
SMC4-211ENST00000469858 NRKQ7Z2Y5 1582 aa24.17■■□□□ 1.46
SMC4-211ENST00000469858 RBM33Q96EV2 1170 aaKnown RBP24.16■■□□□ 1.46
SMC4-211ENST00000469858 CFAP53Q96M91 514 aa24.16■■□□□ 1.46
SMC4-211ENST00000469858 NWD1Q149M9 1564 aa24.16■■□□□ 1.46
SMC4-211ENST00000469858 NME9Q86XW9 330 aa24.15■■□□□ 1.46
SMC4-211ENST00000469858 ANKARQ7Z5J8 1434 aa24.14■■□□□ 1.45
SMC4-211ENST00000469858 HSPA2P54652 639 aa24.13■■□□□ 1.45
SMC4-211ENST00000469858 PMFBP1Q8TBY8 1022 aa24.12■■□□□ 1.45
SMC4-211ENST00000469858 USP6P35125 1406 aa24.12■■□□□ 1.45
SMC4-211ENST00000469858 ADGRL3Q9HAR2 1447 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms