RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SF3B2Q13435 895 aaKnown RBP18■□□□□ 0.47
SQSTM1-206ENST00000466342 IQGAP3Q86VI3 1631 aa18■□□□□ 0.47
SQSTM1-206ENST00000466342 SPHKAPQ2M3C7 1700 aa17.98■□□□□ 0.47
SQSTM1-206ENST00000466342 MYOM2P54296 1465 aa17.98■□□□□ 0.47
SQSTM1-206ENST00000466342 GLI3P10071 1580 aa17.96■□□□□ 0.46
SQSTM1-206ENST00000466342 HRCP23327 699 aa17.95■□□□□ 0.46
SQSTM1-206ENST00000466342 ITGAEP38570 1179 aa17.95■□□□□ 0.46
SQSTM1-206ENST00000466342 ZNF326Q5BKZ1 582 aaKnown RBP17.94■□□□□ 0.46
SQSTM1-206ENST00000466342 UNC5CLQ8IV45 518 aa17.94■□□□□ 0.46
SQSTM1-206ENST00000466342 RALGAPBQ86X10 1494 aa17.94■□□□□ 0.46
SQSTM1-206ENST00000466342 PSDA5PKW4 1024 aaPredicted RBP17.93■□□□□ 0.46
SQSTM1-206ENST00000466342 NPHP3Q7Z494 1330 aa17.92■□□□□ 0.46
SQSTM1-206ENST00000466342 SLIT2O94813 1529 aa17.9■□□□□ 0.46
SQSTM1-206ENST00000466342 SEPT12Q8IYM1 358 aa17.89■□□□□ 0.45
SQSTM1-206ENST00000466342 PXDNQ92626 1479 aa17.88■□□□□ 0.45
SQSTM1-206ENST00000466342 ESCO1Q5FWF5 840 aa17.88■□□□□ 0.45
SQSTM1-206ENST00000466342 NUP155O75694 1391 aa17.88■□□□□ 0.45
SQSTM1-206ENST00000466342 BAG6P46379 1132 aa17.87■□□□□ 0.45
SQSTM1-206ENST00000466342 ROBO2Q9HCK4 1378 aa17.87■□□□□ 0.45
SQSTM1-206ENST00000466342 ONECUT3O60422 494 aaPredicted RBP17.86■□□□□ 0.45
SQSTM1-206ENST00000466342 FOXO3O43524 673 aa17.85■□□□□ 0.45
SQSTM1-206ENST00000466342 NEXMIFQ5QGS0 1516 aa17.85■□□□□ 0.45
SQSTM1-206ENST00000466342 KRT27Q7Z3Y8 459 aa17.85■□□□□ 0.45
SQSTM1-206ENST00000466342 XPCQ01831 940 aaPredicted RBP17.84■□□□□ 0.45
SQSTM1-206ENST00000466342 HFM1A2PYH4 1435 aa17.83■□□□□ 0.45
SQSTM1-206ENST00000466342 NAIPQ13075 1403 aa17.83■□□□□ 0.45
SQSTM1-206ENST00000466342 LRPPRCP42704 1394 aaKnown RBP17.83■□□□□ 0.45
SQSTM1-206ENST00000466342 YY1P25490 414 aa17.83■□□□□ 0.44
SQSTM1-206ENST00000466342 VPS72Q15906 364 aa17.83■□□□□ 0.44
SQSTM1-206ENST00000466342 KIF1BO60333 1816 aa17.82■□□□□ 0.44
SQSTM1-206ENST00000466342 PRAG1Q86YV5 1406 aa17.81■□□□□ 0.44
SQSTM1-206ENST00000466342 NWD2Q9ULI1 1742 aa17.81■□□□□ 0.44
SQSTM1-206ENST00000466342 USP32Q8NFA0 1604 aa17.8■□□□□ 0.44
SQSTM1-206ENST00000466342 R3HDM1Q15032 1099 aaKnown RBP17.79■□□□□ 0.44
SQSTM1-206ENST00000466342 CDC42BPGQ6DT37 1551 aa17.79■□□□□ 0.44
SQSTM1-206ENST00000466342 RGPD1P0DJD0 1748 aa17.78■□□□□ 0.44
SQSTM1-206ENST00000466342 SPATA31A3Q5VYP0 1347 aa17.78■□□□□ 0.44
SQSTM1-206ENST00000466342 PLCH1Q4KWH8 1693 aa17.78■□□□□ 0.44
SQSTM1-206ENST00000466342 VGFO15240 615 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-206ENST00000466342 EN1Q05925 392 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-206ENST00000466342 CCDC9Q9Y3X0 531 aaKnown RBP17.78■□□□□ 0.44
SQSTM1-206ENST00000466342 CLTCL1P53675 1640 aa17.76■□□□□ 0.43
SQSTM1-206ENST00000466342 HAP1P54257 671 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-206ENST00000466342 A0A0G2JS52 829 aa17.73■□□□□ 0.43
SQSTM1-206ENST00000466342 NUTM2FA1L443 756 aa17.73■□□□□ 0.43
SQSTM1-206ENST00000466342 MYT1Q01538 1121 aa17.73■□□□□ 0.43
SQSTM1-206ENST00000466342 KRT28Q7Z3Y7 464 aa17.72■□□□□ 0.43
SQSTM1-206ENST00000466342 KIF1AQ12756 1690 aa17.71■□□□□ 0.43
SQSTM1-206ENST00000466342 CABLES1Q8TDN4 633 aa17.7■□□□□ 0.42
SQSTM1-206ENST00000466342 CCDC144AA2RUR9 1427 aa17.7■□□□□ 0.42
SQSTM1-206ENST00000466342 TNS1Q9HBL0 1735 aaKnown RBP17.69■□□□□ 0.42
SQSTM1-206ENST00000466342 RGPD8O14715 1765 aaPredicted RBP17.69■□□□□ 0.42
SQSTM1-206ENST00000466342 FAM98CQ17RN3 349 aaKnown RBP17.69■□□□□ 0.42
SQSTM1-206ENST00000466342 DISP2A7MBM2 1401 aa17.69■□□□□ 0.42
SQSTM1-206ENST00000466342 EZH2Q15910 746 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-206ENST00000466342 ABCA3Q99758 1704 aa17.68■□□□□ 0.42
SQSTM1-206ENST00000466342 FMN2Q9NZ56 1722 aa17.68■□□□□ 0.42
SQSTM1-206ENST00000466342 RPGRIP1LQ68CZ1 1315 aa17.68■□□□□ 0.42
SQSTM1-206ENST00000466342 PPLO60437 1756 aa17.67■□□□□ 0.42
SQSTM1-206ENST00000466342 FAM83GA6ND36 823 aa17.67■□□□□ 0.42
SQSTM1-206ENST00000466342 PSME1Q06323 249 aa17.66■□□□□ 0.42
SQSTM1-206ENST00000466342 FAM182BQ5T319 152 aa17.66■□□□□ 0.42
SQSTM1-206ENST00000466342 WAPLQ7Z5K2 1190 aa17.66■□□□□ 0.42
SQSTM1-206ENST00000466342 NRAPQ86VF7 1730 aa17.66■□□□□ 0.42
SQSTM1-206ENST00000466342 TNS3Q68CZ2 1445 aa17.65■□□□□ 0.42
SQSTM1-206ENST00000466342 DCAF8L1A6NGE4 600 aa17.65■□□□□ 0.42
SQSTM1-206ENST00000466342 CAMKK2Q96RR4 588 aa17.65■□□□□ 0.42
SQSTM1-206ENST00000466342 SLC4A1APQ9BWU0 796 aaKnown RBP17.65■□□□□ 0.42
SQSTM1-206ENST00000466342 PLEKHG5O94827 1062 aa17.64■□□□□ 0.41
SQSTM1-206ENST00000466342 RAB3GAP2Q9H2M9 1393 aa17.64■□□□□ 0.41
SQSTM1-206ENST00000466342 TRIM26Q12899 539 aaPredicted RBP17.62■□□□□ 0.41
SQSTM1-206ENST00000466342 ACIN1Q9UKV3 1341 aaKnown RBP17.62■□□□□ 0.41
SQSTM1-206ENST00000466342 LMOD2Q6P5Q4 547 aa17.61■□□□□ 0.41
SQSTM1-206ENST00000466342 BTG4Q9NY30 223 aa17.61■□□□□ 0.41
SQSTM1-206ENST00000466342 STK26Q9P289 416 aa17.61■□□□□ 0.41
SQSTM1-206ENST00000466342 SBNO1A3KN83 1393 aa17.61■□□□□ 0.41
SQSTM1-206ENST00000466342 PHF8Q9UPP1 1060 aa17.6■□□□□ 0.41
SQSTM1-206ENST00000466342 TECPR2O15040 1411 aa17.6■□□□□ 0.41
SQSTM1-206ENST00000466342 ADGRB2O60241 1585 aa17.6■□□□□ 0.41
SQSTM1-206ENST00000466342 COL14A1Q05707 1796 aaKnown RBP17.59■□□□□ 0.41
SQSTM1-206ENST00000466342 THSD7AQ9UPZ6 1657 aa17.59■□□□□ 0.41
SQSTM1-206ENST00000466342 ARHGEF10O15013 1369 aa17.59■□□□□ 0.41
SQSTM1-206ENST00000466342 PARD3Q8TEW0 1356 aa17.59■□□□□ 0.41
SQSTM1-206ENST00000466342 KNDC1Q76NI1 1749 aa17.58■□□□□ 0.41
SQSTM1-206ENST00000466342 IFT172Q9UG01 1749 aa17.58■□□□□ 0.41
SQSTM1-206ENST00000466342 RREB1Q92766 1687 aa17.58■□□□□ 0.41
SQSTM1-206ENST00000466342 SPATA31A5Q5VU36 1347 aa17.58■□□□□ 0.4
SQSTM1-206ENST00000466342 SPATA31A7Q8IWB4 1347 aa17.58■□□□□ 0.4
SQSTM1-206ENST00000466342 TRIM37O94972 964 aa17.58■□□□□ 0.4
SQSTM1-206ENST00000466342 PPP1R1BQ9UD71 204 aaPredicted RBP17.58■□□□□ 0.4
SQSTM1-206ENST00000466342 ABCC11Q96J66 1382 aa17.57■□□□□ 0.4
SQSTM1-206ENST00000466342 PLEKHH1Q9ULM0 1364 aa17.57■□□□□ 0.4
SQSTM1-206ENST00000466342 APBA3O96018 575 aa17.57■□□□□ 0.4
SQSTM1-206ENST00000466342 IFFO2Q5TF58 517 aa17.57■□□□□ 0.4
SQSTM1-206ENST00000466342 FAM196AQ6ZSG2 479 aa17.57■□□□□ 0.4
SQSTM1-206ENST00000466342 NBPF8Q3BBV2 869 aa17.56■□□□□ 0.4
SQSTM1-206ENST00000466342 NBPF14Q5TI25 921 aa17.56■□□□□ 0.4
SQSTM1-206ENST00000466342 SPON1Q9HCB6 807 aa17.56■□□□□ 0.4
SQSTM1-206ENST00000466342 NUP188Q5SRE5 1749 aa17.55■□□□□ 0.4
SQSTM1-206ENST00000466342 NRXN1Q9ULB1 1477 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms