RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 NSD3Q9BZ95 1437 aa24.54■■□□□ 1.52
COL9A3-205ENST00000466192 NLRP1Q9C000 1473 aa24.54■■□□□ 1.52
COL9A3-205ENST00000466192 MINK1Q8N4C8 1332 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-205ENST00000466192 USP32Q8NFA0 1604 aa24.52■■□□□ 1.52
COL9A3-205ENST00000466192 HDGFP51858 240 aaKnown RBP24.51■■□□□ 1.51
COL9A3-205ENST00000466192 METP08581 1390 aa24.5■■□□□ 1.51
COL9A3-205ENST00000466192 ABCC11Q96J66 1382 aa24.49■■□□□ 1.51
COL9A3-205ENST00000466192 SRPK2P78362 688 aaKnown RBP24.49■■□□□ 1.51
COL9A3-205ENST00000466192 DNAJC5Q9H3Z4 198 aa24.49■■□□□ 1.51
COL9A3-205ENST00000466192 ANKRD36BQ8N2N9 1353 aa24.48■■□□□ 1.51
COL9A3-205ENST00000466192 IRX6P78412 446 aaPredicted RBP24.48■■□□□ 1.51
COL9A3-205ENST00000466192 INSRP06213 1382 aa24.48■■□□□ 1.51
COL9A3-205ENST00000466192 BLMP54132 1417 aaPredicted RBP24.47■■□□□ 1.51
COL9A3-205ENST00000466192 KNDC1Q76NI1 1749 aa24.47■■□□□ 1.51
COL9A3-205ENST00000466192 PLPPR3Q6T4P5 718 aa24.46■■□□□ 1.51
COL9A3-205ENST00000466192 WAPLQ7Z5K2 1190 aa24.46■■□□□ 1.51
COL9A3-205ENST00000466192 PLEKHH1Q9ULM0 1364 aa24.46■■□□□ 1.51
COL9A3-205ENST00000466192 SMG6Q86US8 1419 aaKnown RBP24.46■■□□□ 1.51
COL9A3-205ENST00000466192 NINLQ9Y2I6 1382 aa24.44■■□□□ 1.5
COL9A3-205ENST00000466192 ATAD2Q6PL18 1390 aa24.44■■□□□ 1.5
COL9A3-205ENST00000466192 LTKP29376 864 aa24.43■■□□□ 1.5
COL9A3-205ENST00000466192 CDK19Q9BWU1 502 aa24.43■■□□□ 1.5
COL9A3-205ENST00000466192 ADAMTS8Q9UP79 889 aa24.42■■□□□ 1.5
COL9A3-205ENST00000466192 ADAMTS13Q76LX8 1427 aa24.42■■□□□ 1.5
COL9A3-205ENST00000466192 A0A1W2PP64 1363 aa24.41■■□□□ 1.5
COL9A3-205ENST00000466192 CGNL1Q0VF96 1302 aa24.41■■□□□ 1.5
COL9A3-205ENST00000466192 NUDCQ9Y266 331 aa24.4■■□□□ 1.5
COL9A3-205ENST00000466192 PLEKHG1Q9ULL1 1385 aa24.4■■□□□ 1.5
COL9A3-205ENST00000466192 TECPR2O15040 1411 aa24.39■■□□□ 1.5
COL9A3-205ENST00000466192 SLIT1O75093 1534 aa24.39■■□□□ 1.5
COL9A3-205ENST00000466192 CD163L1Q9NR16 1453 aa24.39■■□□□ 1.49
COL9A3-205ENST00000466192 CPS1P31327 1500 aa24.39■■□□□ 1.49
COL9A3-205ENST00000466192 MORC1Q86VD1 984 aa24.39■■□□□ 1.49
COL9A3-205ENST00000466192 TXNDC2Q86VQ3 553 aa24.39■■□□□ 1.49
COL9A3-205ENST00000466192 RIMS1Q86UR5 1692 aaKnown RBP24.39■■□□□ 1.49
COL9A3-205ENST00000466192 ARHGAP23Q9P227 1491 aa24.38■■□□□ 1.49
COL9A3-205ENST00000466192 WDR43Q15061 677 aaKnown RBP eCLIP24.38■■□□□ 1.494e-6■□□□□ 8.9
COL9A3-205ENST00000466192 SALL2Q9Y467 1007 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-205ENST00000466192 FAM135BQ49AJ0 1406 aa24.36■■□□□ 1.49
COL9A3-205ENST00000466192 NSD2O96028 1365 aa24.35■■□□□ 1.49
COL9A3-205ENST00000466192 SIRT1Q96EB6 747 aa24.35■■□□□ 1.49
COL9A3-205ENST00000466192 MED14O60244 1454 aa24.34■■□□□ 1.49
COL9A3-205ENST00000466192 TNNT2P45379 298 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-205ENST00000466192 TERF2IPQ9NYB0 399 aa24.33■■□□□ 1.49
COL9A3-205ENST00000466192 EID1Q9Y6B2 187 aa24.33■■□□□ 1.49
COL9A3-205ENST00000466192 POLR3AO14802 1390 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-205ENST00000466192 ANKRD26Q9UPS8 1709 aa24.32■■□□□ 1.48
COL9A3-205ENST00000466192 CABP1Q9NZU7 370 aa24.32■■□□□ 1.48
COL9A3-205ENST00000466192 SHPRHQ149N8 1683 aa24.31■■□□□ 1.48
COL9A3-205ENST00000466192 THEMISQ8N1K5 641 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-205ENST00000466192 ROBO2Q9HCK4 1378 aa24.3■■□□□ 1.48
COL9A3-205ENST00000466192 ADAMTSL3P82987 1691 aa24.3■■□□□ 1.48
COL9A3-205ENST00000466192 WASLO00401 505 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-205ENST00000466192 CEP170BQ9Y4F5 1589 aaPredicted RBP24.29■■□□□ 1.48
COL9A3-205ENST00000466192 SLC26A8Q96RN1 970 aa24.29■■□□□ 1.48
COL9A3-205ENST00000466192 PDE3BQ13370 1112 aa24.28■■□□□ 1.48
COL9A3-205ENST00000466192 KIF20BQ96Q89 1820 aa24.28■■□□□ 1.48
COL9A3-205ENST00000466192 ERICH6BQ5W0A0 696 aa24.27■■□□□ 1.48
COL9A3-205ENST00000466192 HDGFL2Q7Z4V5 671 aaPredicted RBP24.27■■□□□ 1.48
COL9A3-205ENST00000466192 ATP7BP35670 1465 aa24.27■■□□□ 1.48
COL9A3-205ENST00000466192 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-205ENST00000466192 PTPRUQ92729 1446 aa24.26■■□□□ 1.47
COL9A3-205ENST00000466192 FYB1O15117 783 aa24.25■■□□□ 1.47
COL9A3-205ENST00000466192 MTHFSP49914 203 aa24.25■■□□□ 1.47
COL9A3-205ENST00000466192 CDCA7LQ96GN5 454 aa24.25■■□□□ 1.47
COL9A3-205ENST00000466192 GGNBP2Q9H3C7 697 aa24.25■■□□□ 1.47
COL9A3-205ENST00000466192 CCDC146Q8IYE0 955 aa24.23■■□□□ 1.47
COL9A3-205ENST00000466192 ADGRB2O60241 1585 aa24.23■■□□□ 1.47
COL9A3-205ENST00000466192 TBX22Q9Y458 520 aa24.22■■□□□ 1.47
COL9A3-205ENST00000466192 PPIP5K1Q6PFW1 1433 aa24.22■■□□□ 1.47
COL9A3-205ENST00000466192 DIP2AQ14689 1571 aa24.22■■□□□ 1.47
COL9A3-205ENST00000466192 RNF123Q5XPI4 1314 aa24.22■■□□□ 1.47
COL9A3-205ENST00000466192 NUDT16Q96DE0 195 aaKnown RBP24.2■■□□□ 1.47
COL9A3-205ENST00000466192 PPP4R2Q9NY27 417 aa24.2■■□□□ 1.47
COL9A3-205ENST00000466192 ZNF142P52746 1687 aaPredicted RBP24.2■■□□□ 1.46
COL9A3-205ENST00000466192 CPSF1Q10570 1443 aaKnown RBP24.2■■□□□ 1.46
COL9A3-205ENST00000466192 SETD1BQ9UPS6 1966 aaKnown RBP24.19■■□□□ 1.46
COL9A3-205ENST00000466192 NCKAP5LQ9HCH0 1330 aa24.18■■□□□ 1.46
COL9A3-205ENST00000466192 AKAP12Q02952 1782 aa24.18■■□□□ 1.46
COL9A3-205ENST00000466192 CDC42BPGQ6DT37 1551 aa24.18■■□□□ 1.46
COL9A3-205ENST00000466192 TSHZ2Q9NRE2 1034 aa24.18■■□□□ 1.46
COL9A3-205ENST00000466192 AMOTL2Q9Y2J4 779 aa24.18■■□□□ 1.46
COL9A3-205ENST00000466192 MON2Q7Z3U7 1717 aa24.17■■□□□ 1.46
COL9A3-205ENST00000466192 ZNF521Q96K83 1311 aa24.17■■□□□ 1.46
COL9A3-205ENST00000466192 ITSN1Q15811 1721 aa24.17■■□□□ 1.46
COL9A3-205ENST00000466192 PRR36Q9H6K5 1346 aa24.17■■□□□ 1.46
COL9A3-205ENST00000466192 CFAP53Q96M91 514 aa24.16■■□□□ 1.46
COL9A3-205ENST00000466192 CCDC61Q9Y6R9 512 aa24.16■■□□□ 1.46
COL9A3-205ENST00000466192 APAF1O14727 1248 aa24.16■■□□□ 1.46
COL9A3-205ENST00000466192 XRN1Q8IZH2 1706 aaKnown RBP24.15■■□□□ 1.46
COL9A3-205ENST00000466192 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.15■■□□□ 1.46
COL9A3-205ENST00000466192 PTCH1Q13635 1447 aa24.14■■□□□ 1.45
COL9A3-205ENST00000466192 TOPAZ1Q8N9V7 1692 aa24.14■■□□□ 1.45
COL9A3-205ENST00000466192 EDC4Q6P2E9 1401 aaKnown RBP24.13■■□□□ 1.45
COL9A3-205ENST00000466192 RCAN3Q9UKA8 241 aa24.12■■□□□ 1.45
COL9A3-205ENST00000466192 B4GALNT3Q6L9W6 998 aa24.11■■□□□ 1.45
COL9A3-205ENST00000466192 COL3A1P02461 1466 aaPredicted RBP24.1■■□□□ 1.45
COL9A3-205ENST00000466192 MAP2P11137 1827 aaKnown RBP24.1■■□□□ 1.45
COL9A3-205ENST00000466192 GOLGA2Q08379 1002 aa24.08■■□□□ 1.45
COL9A3-205ENST00000466192 RUNDC1Q96C34 613 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms