RNA–Protein interactions for RNA: ENST00000463526.1

CMSS1-202, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 3

Gene CMSS1, Length 397 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-202ENST00000463526 CDK12Q9NYV4 1490 aaPredicted RBP22.87■■□□□ 1.25
CMSS1-202ENST00000463526 XPCQ01831 940 aaPredicted RBP22.87■■□□□ 1.25
CMSS1-202ENST00000463526 CCDC144AA2RUR9 1427 aa22.87■■□□□ 1.25
CMSS1-202ENST00000463526 PPLO60437 1756 aa22.86■■□□□ 1.25
CMSS1-202ENST00000463526 TMEM132EQ6IEE7 984 aa22.86■■□□□ 1.25
CMSS1-202ENST00000463526 RGS12O14924 1447 aa22.85■■□□□ 1.25
CMSS1-202ENST00000463526 USP21Q9UK80 565 aa22.85■■□□□ 1.25
CMSS1-202ENST00000463526 PRAG1Q86YV5 1406 aa22.84■■□□□ 1.25
CMSS1-202ENST00000463526 FOXO3O43524 673 aa22.84■■□□□ 1.25
CMSS1-202ENST00000463526 NPHP3Q7Z494 1330 aa22.82■■□□□ 1.24
CMSS1-202ENST00000463526 ANKRD30BQ9BXX2 1392 aa22.8■■□□□ 1.24
CMSS1-202ENST00000463526 TRPC5Q9UL62 973 aaPredicted RBP22.8■■□□□ 1.24
CMSS1-202ENST00000463526 SPATA31E1Q6ZUB1 1445 aa22.8■■□□□ 1.24
CMSS1-202ENST00000463526 LAMC1P11047 1609 aa22.79■■□□□ 1.24
CMSS1-202ENST00000463526 LRPPRCP42704 1394 aaKnown RBP22.79■■□□□ 1.24
CMSS1-202ENST00000463526 PLEKHH1Q9ULM0 1364 aa22.79■■□□□ 1.24
CMSS1-202ENST00000463526 FNBP4Q8N3X1 1017 aaPredicted RBP22.78■■□□□ 1.24
CMSS1-202ENST00000463526 CDC42BPGQ6DT37 1551 aa22.76■■□□□ 1.23
CMSS1-202ENST00000463526 ABCC11Q96J66 1382 aa22.76■■□□□ 1.23
CMSS1-202ENST00000463526 TECPR2O15040 1411 aa22.74■■□□□ 1.23
CMSS1-202ENST00000463526 PXDNQ92626 1479 aa22.73■■□□□ 1.23
CMSS1-202ENST00000463526 PIK3C2GO75747 1445 aa22.72■■□□□ 1.23
CMSS1-202ENST00000463526 YTHDC2Q9H6S0 1430 aaKnown RBP22.72■■□□□ 1.23
CMSS1-202ENST00000463526 MYOM2P54296 1465 aa22.72■■□□□ 1.23
CMSS1-202ENST00000463526 PLEKHG5O94827 1062 aa22.71■■□□□ 1.23
CMSS1-202ENST00000463526 CFAP70Q5T0N1 1121 aa22.71■■□□□ 1.23
CMSS1-202ENST00000463526 SAFB2Q14151 953 aaKnown RBP eCLIP22.7■■□□□ 1.22
CMSS1-202ENST00000463526 C14orf93Q9H972 538 aaKnown RBP22.7■■□□□ 1.22
CMSS1-202ENST00000463526 ATAD2Q6PL18 1390 aa22.7■■□□□ 1.22
CMSS1-202ENST00000463526 ATRNO75882 1429 aa22.7■■□□□ 1.22
CMSS1-202ENST00000463526 KRT28Q7Z3Y7 464 aa22.69■■□□□ 1.22
CMSS1-202ENST00000463526 COL22A1Q8NFW1 1626 aaPredicted RBP22.68■■□□□ 1.22
CMSS1-202ENST00000463526 IFT172Q9UG01 1749 aa22.67■■□□□ 1.22
CMSS1-202ENST00000463526 BCL9LQ86UU0 1499 aa22.66■■□□□ 1.22
CMSS1-202ENST00000463526 SPATA31A3Q5VYP0 1347 aa22.66■■□□□ 1.22
CMSS1-202ENST00000463526 DHX57Q6P158 1386 aaKnown RBP22.65■■□□□ 1.22
CMSS1-202ENST00000463526 HAP1P54257 671 aaPredicted RBP22.65■■□□□ 1.22
CMSS1-202ENST00000463526 SIRT1Q96EB6 747 aa22.65■■□□□ 1.22
CMSS1-202ENST00000463526 GJD4Q96KN9 370 aaPredicted RBP22.65■■□□□ 1.22
CMSS1-202ENST00000463526 PRAM1Q96QH2 718 aa22.65■■□□□ 1.22
CMSS1-202ENST00000463526 PHF8Q9UPP1 1060 aa22.65■■□□□ 1.22
CMSS1-202ENST00000463526 LMOD2Q6P5Q4 547 aa22.63■■□□□ 1.21
CMSS1-202ENST00000463526 UNC5CLQ8IV45 518 aa22.62■■□□□ 1.21
CMSS1-202ENST00000463526 CABLES1Q8TDN4 633 aa22.62■■□□□ 1.21
CMSS1-202ENST00000463526 POGKQ9P215 609 aa22.62■■□□□ 1.21
CMSS1-202ENST00000463526 KNDC1Q76NI1 1749 aa22.62■■□□□ 1.21
CMSS1-202ENST00000463526 PSME1Q06323 249 aa22.61■■□□□ 1.21
CMSS1-202ENST00000463526 FMN2Q9NZ56 1722 aa22.61■■□□□ 1.21
CMSS1-202ENST00000463526 ACIN1Q9UKV3 1341 aaKnown RBP22.6■■□□□ 1.21
CMSS1-202ENST00000463526 PMFBP1Q8TBY8 1022 aa22.59■■□□□ 1.21
CMSS1-202ENST00000463526 KDM2AQ9Y2K7 1162 aa22.58■■□□□ 1.21
CMSS1-202ENST00000463526 RAB3GAP2Q9H2M9 1393 aa22.58■■□□□ 1.21
CMSS1-202ENST00000463526 NRXN1Q9ULB1 1477 aa22.57■■□□□ 1.2
CMSS1-202ENST00000463526 HIRIP3Q9BW71 556 aaPredicted RBP22.56■■□□□ 1.2
CMSS1-202ENST00000463526 TRAK1Q9UPV9 953 aa22.56■■□□□ 1.2
CMSS1-202ENST00000463526 TNS3Q68CZ2 1445 aa22.56■■□□□ 1.2
CMSS1-202ENST00000463526 KIF1AQ12756 1690 aa22.55■■□□□ 1.2
CMSS1-202ENST00000463526 MARF1Q9Y4F3 1742 aaKnown RBP22.55■■□□□ 1.2
CMSS1-202ENST00000463526 CCDC9Q9Y3X0 531 aaKnown RBP22.55■■□□□ 1.2
CMSS1-202ENST00000463526 SLIT2O94813 1529 aa22.55■■□□□ 1.2
CMSS1-202ENST00000463526 RALGAPBQ86X10 1494 aa22.54■■□□□ 1.2
CMSS1-202ENST00000463526 ZRANB1Q9UGI0 708 aa22.54■■□□□ 1.2
CMSS1-202ENST00000463526 MINK1Q8N4C8 1332 aaPredicted RBP22.53■■□□□ 1.2
CMSS1-202ENST00000463526 RGPD8O14715 1765 aaPredicted RBP22.53■■□□□ 1.2
CMSS1-202ENST00000463526 CCDC125Q86Z20 511 aa22.52■■□□□ 1.2
CMSS1-202ENST00000463526 DCAF11Q8TEB1 546 aa22.52■■□□□ 1.2
CMSS1-202ENST00000463526 SBNO1A3KN83 1393 aa22.51■■□□□ 1.19
CMSS1-202ENST00000463526 SEPT12Q8IYM1 358 aa22.51■■□□□ 1.19
CMSS1-202ENST00000463526 USP32Q8NFA0 1604 aa22.49■■□□□ 1.19
CMSS1-202ENST00000463526 VPS72Q15906 364 aa22.49■■□□□ 1.19
CMSS1-202ENST00000463526 GLI3P10071 1580 aa22.49■■□□□ 1.19
CMSS1-202ENST00000463526 ARHGEF10O15013 1369 aa22.49■■□□□ 1.19
CMSS1-202ENST00000463526 FAM83GA6ND36 823 aa22.48■■□□□ 1.19
CMSS1-202ENST00000463526 DLC1Q96QB1 1528 aa22.47■■□□□ 1.19
CMSS1-202ENST00000463526 A0A0G2JS52 829 aa22.46■■□□□ 1.19
CMSS1-202ENST00000463526 MYT1Q01538 1121 aa22.46■■□□□ 1.19
CMSS1-202ENST00000463526 ANKARQ7Z5J8 1434 aa22.46■■□□□ 1.19
CMSS1-202ENST00000463526 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.45■■□□□ 1.19
CMSS1-202ENST00000463526 PRR36Q9H6K5 1346 aa22.45■■□□□ 1.18
CMSS1-202ENST00000463526 ADGRB1O14514 1584 aa22.44■■□□□ 1.18
CMSS1-202ENST00000463526 GPRASP1Q5JY77 1395 aa22.44■■□□□ 1.18
CMSS1-202ENST00000463526 DEFB132Q7Z7B7 95 aa22.44■■□□□ 1.18
CMSS1-202ENST00000463526 EP400Q96L91 3159 aa22.44■■□□□ 1.18
CMSS1-202ENST00000463526 WASLO00401 505 aaPredicted RBP22.43■■□□□ 1.18
CMSS1-202ENST00000463526 PAK3O75914 559 aaPredicted RBP22.43■■□□□ 1.18
CMSS1-202ENST00000463526 NGDNQ8NEJ9 315 aaKnown RBP22.43■■□□□ 1.18
CMSS1-202ENST00000463526 SF3B2Q13435 895 aaKnown RBP22.42■■□□□ 1.18
CMSS1-202ENST00000463526 BLMP54132 1417 aaPredicted RBP22.41■■□□□ 1.18
CMSS1-202ENST00000463526 KRT27Q7Z3Y8 459 aa22.41■■□□□ 1.18
CMSS1-202ENST00000463526 BTG4Q9NY30 223 aa22.41■■□□□ 1.18
CMSS1-202ENST00000463526 SRCAPQ6ZRS2 3230 aa22.4■■□□□ 1.18
CMSS1-202ENST00000463526 EIF3AQ14152 1382 aaKnown RBP22.39■■□□□ 1.18
CMSS1-202ENST00000463526 ONECUT3O60422 494 aaPredicted RBP22.39■■□□□ 1.17
CMSS1-202ENST00000463526 FAM98CQ17RN3 349 aaKnown RBP22.39■■□□□ 1.17
CMSS1-202ENST00000463526 ADGRB2O60241 1585 aa22.38■■□□□ 1.17
CMSS1-202ENST00000463526 PLCH1Q4KWH8 1693 aa22.37■■□□□ 1.17
CMSS1-202ENST00000463526 BRWD3Q6RI45 1802 aa22.37■■□□□ 1.17
CMSS1-202ENST00000463526 STAC3Q96MF2 364 aa22.36■■□□□ 1.17
CMSS1-202ENST00000463526 TULP4Q9NRJ4 1543 aa22.36■■□□□ 1.17
CMSS1-202ENST00000463526 ABCA3Q99758 1704 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms