RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 EIF4G2P78344 907 aaKnown RBP eCLIP9.98□□□□□ -0.81
CDC42BPA-208ENST00000442054 ORAI2Q96SN7 254 aa9.98□□□□□ -0.81
CDC42BPA-208ENST00000442054 LRPPRCP42704 1394 aaKnown RBP9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 PLEKHG1Q9ULL1 1385 aa9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 IQGAP3Q86VI3 1631 aa9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 CEP170BQ9Y4F5 1589 aaPredicted RBP9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 DDX17Q92841 729 aaKnown RBP9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 CABP2Q9NPB3 220 aa9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 PRKCSHP14314 528 aaPredicted RBP9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 NLRP6P59044 892 aa9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 TERF2IPQ9NYB0 399 aa9.97□□□□□ -0.81
CDC42BPA-208ENST00000442054 KCNA4P22459 653 aa9.96□□□□□ -0.81
CDC42BPA-208ENST00000442054 CDK19Q9BWU1 502 aa9.96□□□□□ -0.81
CDC42BPA-208ENST00000442054 NBPF1Q3BBV0 1214 aa9.96□□□□□ -0.82
CDC42BPA-208ENST00000442054 C14orf93Q9H972 538 aaKnown RBP9.96□□□□□ -0.82
CDC42BPA-208ENST00000442054 PLA2R1Q13018 1463 aa9.96□□□□□ -0.82
CDC42BPA-208ENST00000442054 RBM19Q9Y4C8 960 aaKnown RBP9.95□□□□□ -0.82
CDC42BPA-208ENST00000442054 MSH5O43196 834 aa9.95□□□□□ -0.82
CDC42BPA-208ENST00000442054 ZC3H6P61129 1189 aaKnown RBP9.95□□□□□ -0.82
CDC42BPA-208ENST00000442054 ZBED9Q6R2W3 1325 aa9.95□□□□□ -0.82
CDC42BPA-208ENST00000442054 ADAMTSL3P82987 1691 aa9.95□□□□□ -0.82
CDC42BPA-208ENST00000442054 NEFMP07197 916 aa9.95□□□□□ -0.82
CDC42BPA-208ENST00000442054 LTV1Q96GA3 475 aaPredicted RBP9.95□□□□□ -0.82
CDC42BPA-208ENST00000442054 TNNT2P45379 298 aaPredicted RBP9.94□□□□□ -0.82
CDC42BPA-208ENST00000442054 NUDT16Q96DE0 195 aaKnown RBP9.94□□□□□ -0.82
CDC42BPA-208ENST00000442054 ANP32EQ9BTT0 268 aa9.94□□□□□ -0.82
CDC42BPA-208ENST00000442054 PRDM15P57071 1507 aaPredicted RBP9.94□□□□□ -0.82
CDC42BPA-208ENST00000442054 ERICH6BQ5W0A0 696 aa9.94□□□□□ -0.82
CDC42BPA-208ENST00000442054 CCDC61Q9Y6R9 512 aa9.94□□□□□ -0.82
CDC42BPA-208ENST00000442054 DAXXQ9UER7 740 aaPredicted RBP9.93□□□□□ -0.82
CDC42BPA-208ENST00000442054 SMG6Q86US8 1419 aaKnown RBP9.93□□□□□ -0.82
CDC42BPA-208ENST00000442054 NLRP13Q86W25 1043 aa9.93□□□□□ -0.82
CDC42BPA-208ENST00000442054 REREQ9P2R6 1566 aa9.92□□□□□ -0.82
CDC42BPA-208ENST00000442054 AMPHP49418 695 aa9.92□□□□□ -0.82
CDC42BPA-208ENST00000442054 WASLO00401 505 aaPredicted RBP9.92□□□□□ -0.82
CDC42BPA-208ENST00000442054 CABLES1Q8TDN4 633 aa9.92□□□□□ -0.82
CDC42BPA-208ENST00000442054 ZNF772Q68DY9 489 aaPredicted RBP9.91□□□□□ -0.82
CDC42BPA-208ENST00000442054 CABP1Q9NZU7 370 aa9.91□□□□□ -0.82
CDC42BPA-208ENST00000442054 METP08581 1390 aa9.91□□□□□ -0.82
CDC42BPA-208ENST00000442054 DEPDC5O75140 1603 aa9.9□□□□□ -0.82
CDC42BPA-208ENST00000442054 USP47Q96K76 1375 aa9.9□□□□□ -0.82
CDC42BPA-208ENST00000442054 ST20-MTHFSA0A0A6YYL1 179 aa9.9□□□□□ -0.82
CDC42BPA-208ENST00000442054 IQGAP1P46940 1657 aa9.9□□□□□ -0.82
CDC42BPA-208ENST00000442054 PDE3BQ13370 1112 aa9.9□□□□□ -0.82
CDC42BPA-208ENST00000442054 KNSTRNQ9Y448 316 aa9.9□□□□□ -0.82
CDC42BPA-208ENST00000442054 RXRBP28702 533 aa9.9□□□□□ -0.83
CDC42BPA-208ENST00000442054 BRINP3Q76B58 766 aa9.9□□□□□ -0.83
CDC42BPA-208ENST00000442054 USP21Q9UK80 565 aa9.9□□□□□ -0.83
CDC42BPA-208ENST00000442054 PIK3R4Q99570 1358 aa9.89□□□□□ -0.83
CDC42BPA-208ENST00000442054 FANCIQ9NVI1 1328 aa9.89□□□□□ -0.83
CDC42BPA-208ENST00000442054 QTRT2Q9H974 415 aaKnown RBP9.89□□□□□ -0.83
CDC42BPA-208ENST00000442054 TOM1L2Q6ZVM7 507 aa9.88□□□□□ -0.83
CDC42BPA-208ENST00000442054 NLRP2Q9NX02 1062 aa9.88□□□□□ -0.83
CDC42BPA-208ENST00000442054 PRAG1Q86YV5 1406 aa9.88□□□□□ -0.83
CDC42BPA-208ENST00000442054 C3P01024 1663 aa9.88□□□□□ -0.83
CDC42BPA-208ENST00000442054 COG3Q96JB2 828 aa9.88□□□□□ -0.83
CDC42BPA-208ENST00000442054 HNRNPUQ00839 825 aaKnown RBP eCLIP9.88□□□□□ -0.83
CDC42BPA-208ENST00000442054 NPM2Q86SE8 214 aaKnown RBP9.88□□□□□ -0.83
CDC42BPA-208ENST00000442054 MYOM1P52179 1685 aa9.87□□□□□ -0.83
CDC42BPA-208ENST00000442054 PREX1Q8TCU6 1659 aa9.87□□□□□ -0.83
CDC42BPA-208ENST00000442054 CEP152O94986 1710 aa9.87□□□□□ -0.83
CDC42BPA-208ENST00000442054 CHRNA2Q15822 529 aa9.87□□□□□ -0.83
CDC42BPA-208ENST00000442054 JCADQ9P266 1359 aa9.87□□□□□ -0.83
CDC42BPA-208ENST00000442054 EIF2AK4Q9P2K8 1649 aaKnown RBP9.86□□□□□ -0.83
CDC42BPA-208ENST00000442054 SPHKAPQ2M3C7 1700 aa9.86□□□□□ -0.83
CDC42BPA-208ENST00000442054 ZNF692Q9BU19 519 aaPredicted RBP9.86□□□□□ -0.83
CDC42BPA-208ENST00000442054 VWDEQ8N2E2 1590 aa9.85□□□□□ -0.83
CDC42BPA-208ENST00000442054 NEURL4Q96JN8 1562 aa9.85□□□□□ -0.83
CDC42BPA-208ENST00000442054 SYTL4Q96C24 671 aaPredicted RBP9.85□□□□□ -0.83
CDC42BPA-208ENST00000442054 YTHDC2Q9H6S0 1430 aaKnown RBP9.85□□□□□ -0.83
CDC42BPA-208ENST00000442054 IFT172Q9UG01 1749 aa9.84□□□□□ -0.83
CDC42BPA-208ENST00000442054 PNISRQ8TF01 805 aaKnown RBP9.84□□□□□ -0.83
CDC42BPA-208ENST00000442054 INSRP06213 1382 aa9.84□□□□□ -0.83
CDC42BPA-208ENST00000442054 TRPC5Q9UL62 973 aaPredicted RBP9.84□□□□□ -0.83
CDC42BPA-208ENST00000442054 CPS1P31327 1500 aa9.84□□□□□ -0.83
CDC42BPA-208ENST00000442054 PARD3Q8TEW0 1356 aa9.84□□□□□ -0.83
CDC42BPA-208ENST00000442054 ACEP12821 1306 aa9.83□□□□□ -0.84
CDC42BPA-208ENST00000442054 SPATA31D1Q6ZQQ2 1576 aa9.83□□□□□ -0.84
CDC42BPA-208ENST00000442054 ROBO2Q9HCK4 1378 aa9.83□□□□□ -0.84
CDC42BPA-208ENST00000442054 ADGRB3O60242 1522 aa9.83□□□□□ -0.84
CDC42BPA-208ENST00000442054 MORC1Q86VD1 984 aa9.83□□□□□ -0.84
CDC42BPA-208ENST00000442054 AFF2P51816 1311 aa9.83□□□□□ -0.84
CDC42BPA-208ENST00000442054 SLC12A5Q9H2X9 1139 aa9.83□□□□□ -0.84
CDC42BPA-208ENST00000442054 ARXQ96QS3 562 aa9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 BTG4Q9NY30 223 aa9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 KTN1Q86UP2 1357 aaKnown RBP9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 ABCC11Q96J66 1382 aa9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 LMTK2Q8IWU2 1503 aa9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 KIAA1210Q9ULL0 1709 aa9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 TET3O43151 1660 aa9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 MROH1Q8NDA8 1641 aa9.82□□□□□ -0.84
CDC42BPA-208ENST00000442054 PER1O15534 1290 aaPredicted RBP9.81□□□□□ -0.84
CDC42BPA-208ENST00000442054 PPP4R2Q9NY27 417 aa9.81□□□□□ -0.84
CDC42BPA-208ENST00000442054 MYO3AQ8NEV4 1616 aa9.81□□□□□ -0.84
CDC42BPA-208ENST00000442054 SPATA31A6Q5VVP1 1343 aa9.81□□□□□ -0.84
CDC42BPA-208ENST00000442054 BLMP54132 1417 aaPredicted RBP9.8□□□□□ -0.84
CDC42BPA-208ENST00000442054 PLEKHH1Q9ULM0 1364 aa9.8□□□□□ -0.84
CDC42BPA-208ENST00000442054 PIK3C2BO00750 1634 aa9.8□□□□□ -0.84
CDC42BPA-208ENST00000442054 DCAF8L1A6NGE4 600 aa9.8□□□□□ -0.84
CDC42BPA-208ENST00000442054 NCBP3Q53F19 620 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms