RNA–Protein interactions for RNA: ENST00000440240.5

CPNE1-219, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-219ENST00000440240 ABCC11Q96J66 1382 aa30.75■■■□□ 2.51
CPNE1-219ENST00000440240 LAMC1P11047 1609 aa30.74■■■□□ 2.51
CPNE1-219ENST00000440240 TMEM132EQ6IEE7 984 aa30.73■■■□□ 2.51
CPNE1-219ENST00000440240 WAPLQ7Z5K2 1190 aa30.73■■■□□ 2.51
CPNE1-219ENST00000440240 TECPR2O15040 1411 aa30.73■■■□□ 2.51
CPNE1-219ENST00000440240 NGLY1Q96IV0 654 aa30.72■■■□□ 2.51
CPNE1-219ENST00000440240 ADAMTS2O95450 1211 aa30.71■■■□□ 2.51
CPNE1-219ENST00000440240 QTRT2Q9H974 415 aaKnown RBP30.71■■■□□ 2.51
CPNE1-219ENST00000440240 NPHP3Q7Z494 1330 aa30.71■■■□□ 2.51
CPNE1-219ENST00000440240 PIK3C2GO75747 1445 aa30.7■■■□□ 2.5
CPNE1-219ENST00000440240 CDK12Q9NYV4 1490 aaPredicted RBP30.69■■■□□ 2.5
CPNE1-219ENST00000440240 CDC42BPGQ6DT37 1551 aa30.68■■■□□ 2.5
CPNE1-219ENST00000440240 RBM6P78332 1123 aaKnown RBP30.67■■■□□ 2.5
CPNE1-219ENST00000440240 UPF1Q92900 1129 aaKnown RBP eCLIP30.67■■■□□ 2.5
CPNE1-219ENST00000440240 SIRT1Q96EB6 747 aa30.67■■■□□ 2.5
CPNE1-219ENST00000440240 C14orf93Q9H972 538 aaKnown RBP30.67■■■□□ 2.5
CPNE1-219ENST00000440240 IFT172Q9UG01 1749 aa30.67■■■□□ 2.5
CPNE1-219ENST00000440240 FOXO3O43524 673 aa30.65■■■□□ 2.5
CPNE1-219ENST00000440240 YTHDC2Q9H6S0 1430 aaKnown RBP30.64■■■□□ 2.5
CPNE1-219ENST00000440240 NUTM2FA1L443 756 aa30.62■■■□□ 2.49
CPNE1-219ENST00000440240 RAB3GAP2Q9H2M9 1393 aa30.62■■■□□ 2.49
CPNE1-219ENST00000440240 PLEKHH1Q9ULM0 1364 aa30.61■■■□□ 2.49
CPNE1-219ENST00000440240 DHX57Q6P158 1386 aaKnown RBP30.6■■■□□ 2.49
CPNE1-219ENST00000440240 CFAP70Q5T0N1 1121 aa30.59■■■□□ 2.49
CPNE1-219ENST00000440240 USP21Q9UK80 565 aa30.59■■■□□ 2.49
CPNE1-219ENST00000440240 FNBP4Q8N3X1 1017 aaPredicted RBP30.58■■■□□ 2.49
CPNE1-219ENST00000440240 XPCQ01831 940 aaPredicted RBP30.57■■■□□ 2.48
CPNE1-219ENST00000440240 KNDC1Q76NI1 1749 aa30.56■■■□□ 2.48
CPNE1-219ENST00000440240 PXDNQ92626 1479 aa30.56■■■□□ 2.48
CPNE1-219ENST00000440240 NRXN1Q9ULB1 1477 aa30.56■■■□□ 2.48
CPNE1-219ENST00000440240 TRPC5Q9UL62 973 aaPredicted RBP30.55■■■□□ 2.48
CPNE1-219ENST00000440240 MYOM2P54296 1465 aa30.55■■■□□ 2.48
CPNE1-219ENST00000440240 COL22A1Q8NFW1 1626 aaPredicted RBP30.53■■■□□ 2.48
CPNE1-219ENST00000440240 RGS12O14924 1447 aa30.51■■■□□ 2.47
CPNE1-219ENST00000440240 HRCP23327 699 aa30.49■■■□□ 2.47
CPNE1-219ENST00000440240 PRAM1Q96QH2 718 aa30.49■■■□□ 2.47
CPNE1-219ENST00000440240 KRT28Q7Z3Y7 464 aa30.48■■■□□ 2.47
CPNE1-219ENST00000440240 SPATA31A3Q5VYP0 1347 aa30.47■■■□□ 2.47
CPNE1-219ENST00000440240 STAC3Q96MF2 364 aa30.47■■■□□ 2.47
CPNE1-219ENST00000440240 POGKQ9P215 609 aa30.47■■■□□ 2.47
CPNE1-219ENST00000440240 FMN2Q9NZ56 1722 aa30.47■■■□□ 2.47
CPNE1-219ENST00000440240 PHF8Q9UPP1 1060 aa30.46■■■□□ 2.47
CPNE1-219ENST00000440240 PSME1Q06323 249 aa30.45■■■□□ 2.47
CPNE1-219ENST00000440240 SAFB2Q14151 953 aaKnown RBP eCLIP30.45■■■□□ 2.473e-13■□□□□ 9.1
CPNE1-219ENST00000440240 ATRNO75882 1429 aa30.42■■■□□ 2.46
CPNE1-219ENST00000440240 DCAF11Q8TEB1 546 aa30.42■■■□□ 2.46
CPNE1-219ENST00000440240 KIF1AQ12756 1690 aa30.42■■■□□ 2.46
CPNE1-219ENST00000440240 KDM2AQ9Y2K7 1162 aa30.41■■■□□ 2.46
CPNE1-219ENST00000440240 BCL9LQ86UU0 1499 aa30.39■■■□□ 2.46
CPNE1-219ENST00000440240 DLC1Q96QB1 1528 aa30.39■■■□□ 2.46
CPNE1-219ENST00000440240 TRAK1Q9UPV9 953 aa30.38■■■□□ 2.45
CPNE1-219ENST00000440240 ATAD2Q6PL18 1390 aa30.37■■■□□ 2.45
CPNE1-219ENST00000440240 GJD4Q96KN9 370 aaPredicted RBP30.36■■■□□ 2.45
CPNE1-219ENST00000440240 HAP1P54257 671 aaPredicted RBP30.35■■■□□ 2.45
CPNE1-219ENST00000440240 ANKARQ7Z5J8 1434 aa30.34■■■□□ 2.45
CPNE1-219ENST00000440240 UNC5CLQ8IV45 518 aa30.34■■■□□ 2.45
CPNE1-219ENST00000440240 ADGRB1O14514 1584 aa30.33■■■□□ 2.45
CPNE1-219ENST00000440240 SBNO1A3KN83 1393 aa30.33■■■□□ 2.45
CPNE1-219ENST00000440240 TNS3Q68CZ2 1445 aa30.32■■■□□ 2.44
CPNE1-219ENST00000440240 MARF1Q9Y4F3 1742 aaKnown RBP30.32■■■□□ 2.44
CPNE1-219ENST00000440240 LMOD2Q6P5Q4 547 aa30.31■■■□□ 2.44
CPNE1-219ENST00000440240 PMFBP1Q8TBY8 1022 aa30.31■■■□□ 2.44
CPNE1-219ENST00000440240 RGPD8O14715 1765 aaPredicted RBP30.31■■■□□ 2.44
CPNE1-219ENST00000440240 ARHGEF10O15013 1369 aa30.29■■■□□ 2.44
CPNE1-219ENST00000440240 HIRIP3Q9BW71 556 aaPredicted RBP30.29■■■□□ 2.44
CPNE1-219ENST00000440240 EIF3AQ14152 1382 aaKnown RBP30.28■■■□□ 2.44
CPNE1-219ENST00000440240 MINK1Q8N4C8 1332 aaPredicted RBP30.28■■■□□ 2.44
CPNE1-219ENST00000440240 CABLES1Q8TDN4 633 aa30.28■■■□□ 2.44
CPNE1-219ENST00000440240 SLIT2O94813 1529 aa30.27■■■□□ 2.44
CPNE1-219ENST00000440240 WASLO00401 505 aaPredicted RBP30.26■■■□□ 2.43
CPNE1-219ENST00000440240 ADGRB2O60241 1585 aa30.25■■■□□ 2.43
CPNE1-219ENST00000440240 CCDC125Q86Z20 511 aa30.24■■■□□ 2.43
CPNE1-219ENST00000440240 PLEKHG5O94827 1062 aa30.23■■■□□ 2.43
CPNE1-219ENST00000440240 GPRASP1Q5JY77 1395 aa30.23■■■□□ 2.43
CPNE1-219ENST00000440240 USP32Q8NFA0 1604 aa30.22■■■□□ 2.43
CPNE1-219ENST00000440240 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.2■■■□□ 2.43
CPNE1-219ENST00000440240 PRR36Q9H6K5 1346 aa30.2■■■□□ 2.42
CPNE1-219ENST00000440240 VPS72Q15906 364 aa30.19■■■□□ 2.42
CPNE1-219ENST00000440240 RALGAPBQ86X10 1494 aa30.19■■■□□ 2.42
CPNE1-219ENST00000440240 NGDNQ8NEJ9 315 aaKnown RBP30.18■■■□□ 2.42
CPNE1-219ENST00000440240 TULP4Q9NRJ4 1543 aa30.17■■■□□ 2.42
CPNE1-219ENST00000440240 FAM83GA6ND36 823 aa30.16■■■□□ 2.42
CPNE1-219ENST00000440240 EP400Q96L91 3159 aa30.14■■■□□ 2.42
CPNE1-219ENST00000440240 CCDC9Q9Y3X0 531 aaKnown RBP30.14■■■□□ 2.42
CPNE1-219ENST00000440240 GLI3P10071 1580 aa30.12■■■□□ 2.41
CPNE1-219ENST00000440240 ONECUT3O60422 494 aaPredicted RBP30.12■■■□□ 2.41
CPNE1-219ENST00000440240 SEPT12Q8IYM1 358 aa30.11■■■□□ 2.41
CPNE1-219ENST00000440240 NUDT16Q96DE0 195 aaKnown RBP30.11■■■□□ 2.41
CPNE1-219ENST00000440240 PAK3O75914 559 aaPredicted RBP30.1■■■□□ 2.41
CPNE1-219ENST00000440240 CDK19Q9BWU1 502 aa30.08■■■□□ 2.41
CPNE1-219ENST00000440240 NWD2Q9ULI1 1742 aa30.08■■■□□ 2.41
CPNE1-219ENST00000440240 ZRANB1Q9UGI0 708 aa30.07■■■□□ 2.4
CPNE1-219ENST00000440240 TRPM3Q9HCF6 1732 aaPredicted RBP30.07■■■□□ 2.4
CPNE1-219ENST00000440240 BTG4Q9NY30 223 aa30.06■■■□□ 2.4
CPNE1-219ENST00000440240 ABCA3Q99758 1704 aa30.05■■■□□ 2.4
CPNE1-219ENST00000440240 ARHGEF28Q8N1W1 1705 aaKnown RBP30.03■■■□□ 2.4
CPNE1-219ENST00000440240 CCDC61Q9Y6R9 512 aa30.03■■■□□ 2.4
CPNE1-219ENST00000440240 PLCH1Q4KWH8 1693 aa30.03■■■□□ 2.4
CPNE1-219ENST00000440240 ALS2Q96Q42 1657 aa30.02■■■□□ 2.4
CPNE1-219ENST00000440240 KRT27Q7Z3Y8 459 aa30.02■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms