RNA–Protein interactions for RNA: ENST00000440240.5

CPNE1-219, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-219ENST00000440240 CSTF2P33240 577 aaKnown RBP eCLIP20.61■□□□□ 0.892e-45■■■■■ 66.1
CPNE1-219ENST00000440240 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.14■■■■□ 3.061e-38■■□□□ 13.2
CPNE1-219ENST00000440240 U2AF2P26368 475 aaKnown RBP eCLIP22.85■■□□□ 1.253e-26■□□□□ 9.9
CPNE1-219ENST00000440240 PCBP1Q15365 356 aaKnown RBP eCLIP23.15■■□□□ 1.32e-19■□□□□ 8.2
CPNE1-219ENST00000440240 SAFBQ15424 915 aaKnown RBP eCLIP23.03■■□□□ 1.281e-17■■■■□ 20.2
CPNE1-219ENST00000440240 RBFOX2O43251 390 aaKnown RBP eCLIP15.6■□□□□ 0.093e-14■■■■■ 31.7
CPNE1-219ENST00000440240 DDX3XO00571 662 aaKnown RBP eCLIP20.79■□□□□ 0.921e-13■■■□□ 15.3
CPNE1-219ENST00000440240 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.53■□□□□ 0.563e-13■■■■■ 108.9
CPNE1-219ENST00000440240 SAFB2Q14151 953 aaKnown RBP eCLIP30.45■■■□□ 2.473e-13■□□□□ 9.1
CPNE1-219ENST00000440240 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.39■■□□□ 1.497e-13■■■■■ 34.6
CPNE1-219ENST00000440240 DDX6P26196 483 aaKnown RBP eCLIP22.32■■□□□ 1.169e-13■■■■□ 25.3
CPNE1-219ENST00000440240 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.67■□□□□ 0.745e-12■■■■□ 21.5
CPNE1-219ENST00000440240 PPIGQ13427 754 aaKnown RBP eCLIP24.41■■□□□ 1.51e-11■■□□□ 11.5
CPNE1-219ENST00000440240 FUSP35637 526 aaKnown RBP eCLIP14.05□□□□□ -0.161e-10■■□□□ 12.2
CPNE1-219ENST00000440240 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.47■■□□□ 1.032e-10■□□□□ 11.3
CPNE1-219ENST00000440240 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.93■□□□□ 0.622e-10■□□□□ 8.4
CPNE1-219ENST00000440240 GRSF1Q12849 480 aaKnown RBP eCLIP22.25■■□□□ 1.153e-10■□□□□ 10.9
CPNE1-219ENST00000440240 FTOQ9C0B1 505 aaKnown RBP eCLIP24.11■■□□□ 1.455e-10■□□□□ 9.7
CPNE1-219ENST00000440240 GTF2F1P35269 517 aaKnown RBP eCLIP23.44■■□□□ 1.346e-10■■■□□ 14.7
CPNE1-219ENST00000440240 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.44■■■□□ 2.787e-10■■□□□ 13.2
CPNE1-219ENST00000440240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.28■■■□□ 2.763e-9■□□□□ 9.4
CPNE1-219ENST00000440240 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.19■■□□□ 1.626e-9■□□□□ 10.4
CPNE1-219ENST00000440240 SF3B4Q15427 424 aaKnown RBP eCLIP19.04■□□□□ 0.646e-9■■■■□ 24.3
CPNE1-219ENST00000440240 RBM15Q96T37 977 aaKnown RBP eCLIP20.86■□□□□ 0.936e-9■■■□□ 15.1
CPNE1-219ENST00000440240 NIPBLQ6KC79 2804 aaeCLIP18.89■□□□□ 0.611e-8■□□□□ 10.5
CPNE1-219ENST00000440240 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.85■■□□□ 1.411e-8■■□□□ 11.7
CPNE1-219ENST00000440240 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.01■□□□□ 0.471e-8■■■□□ 15.5
CPNE1-219ENST00000440240 PRPF4O43172 522 aaKnown RBP eCLIP19.78■□□□□ 0.762e-8■□□□□ 11.3
CPNE1-219ENST00000440240 NOLC1Q14978 699 aaKnown RBP eCLIP22.66■■□□□ 1.223e-8■□□□□ 8.2
CPNE1-219ENST00000440240 SF3A3Q12874 501 aaKnown RBP eCLIP17.53■□□□□ 0.43e-8■■■□□ 15.3
CPNE1-219ENST00000440240 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.65■■□□□ 1.543e-8■□□□□ 9.3
CPNE1-219ENST00000440240 HLTFQ14527 1009 aaKnown RBP eCLIP20.77■□□□□ 0.925e-8■■□□□ 14.2
CPNE1-219ENST00000440240 RPS3P23396 243 aaKnown RBP eCLIP19.87■□□□□ 0.776e-8■■■□□ 18.1
CPNE1-219ENST00000440240 EFTUD2Q15029 972 aaKnown RBP eCLIP19.32■□□□□ 0.687e-8■■■■■ 30.4
CPNE1-219ENST00000440240 G3BP1Q13283 466 aaKnown RBP eCLIP25.62■■□□□ 1.697e-8■□□□□ 11.2
CPNE1-219ENST00000440240 KHSRPQ92945 711 aaKnown RBP eCLIP23.54■■□□□ 1.368e-8■■■□□ 15.7
CPNE1-219ENST00000440240 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.75■□□□□ 0.598e-8■■■■■ 32.7
CPNE1-219ENST00000440240 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.5■■□□□ 1.679e-8■■■■■ 116.8
CPNE1-219ENST00000440240 NCBP2P52298 156 aaKnown RBP eCLIP18.76■□□□□ 0.599e-8■□□□□ 9.8
CPNE1-219ENST00000440240 SRSF7Q16629 238 aaKnown RBP eCLIP15.92■□□□□ 0.141e-7■□□□□ 9.8
CPNE1-219ENST00000440240 HNRNPMP52272 730 aaKnown RBP eCLIP33.34■■■□□ 2.931e-7■■■■□ 25.4
CPNE1-219ENST00000440240 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.37■□□□□ 0.211e-7■■■■□ 24.8
CPNE1-219ENST00000440240 PCBP2Q15366 365 aaKnown RBP eCLIP19.1■□□□□ 0.652e-7■■□□□ 12.7
CPNE1-219ENST00000440240 ILF3Q12906 894 aaKnown RBP eCLIP20.74■□□□□ 0.913e-7■■□□□ 12.3
CPNE1-219ENST00000440240 SF3B1O75533 1304 aaKnown RBP eCLIP22.91■■□□□ 1.263e-7■■■■■ 90.2
CPNE1-219ENST00000440240 BCCIPQ9P287 314 aaKnown RBP eCLIP21.92■■□□□ 1.15e-7■■■□□ 17.8
CPNE1-219ENST00000440240 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.07■■□□□ 1.65e-7■■■■■ 32.3
CPNE1-219ENST00000440240 QKIQ96PU8 341 aaKnown RBP eCLIP20.3■□□□□ 0.846e-7■■■□□ 15.2
CPNE1-219ENST00000440240 AQRO60306 1485 aaKnown RBP eCLIP37.64■■■■□ 3.627e-7■■■■□ 21.9
CPNE1-219ENST00000440240 EIF3HO15372 352 aaKnown RBP eCLIP19.26■□□□□ 0.677e-7■■□□□ 14.2
CPNE1-219ENST00000440240 FMR1Q06787 632 aaKnown RBP eCLIP26.77■■□□□ 1.887e-7■■■□□ 18.6
CPNE1-219ENST00000440240 SFPQP23246 707 aaKnown RBP eCLIP23.29■■□□□ 1.328e-7■□□□□ 11.1
CPNE1-219ENST00000440240 HNRNPCP07910 306 aaKnown RBP eCLIP15.06■□□□□ 08e-7■■■□□ 18.2
CPNE1-219ENST00000440240 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.18■□□□□ 0.669e-7■□□□□ 11
CPNE1-219ENST00000440240 TAF15Q92804 592 aaKnown RBP eCLIP17.22■□□□□ 0.351e-6■□□□□ 9.7
CPNE1-219ENST00000440240 ZRANB2O95218 330 aaKnown RBP eCLIP20.35■□□□□ 0.851e-6■■□□□ 12.9
CPNE1-219ENST00000440240 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.59■■■□□ 2.171e-6■■□□□ 12.2
CPNE1-219ENST00000440240 RBM22Q9NW64 420 aaKnown RBP eCLIP20.64■□□□□ 0.891e-6■■□□□ 12.7
CPNE1-219ENST00000440240 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.88■■□□□ 1.091e-6■■■■■ 61.4
CPNE1-219ENST00000440240 YBX3P16989 372 aaKnown RBP eCLIP28.3■■■□□ 2.122e-6■■■■□ 21.8
CPNE1-219ENST00000440240 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.61■■□□□ 1.052e-6■■■■■ 55.4
CPNE1-219ENST00000440240 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.1■□□□□ 0.812e-6■■■■■ 26.8
CPNE1-219ENST00000440240 FXR2P51116 673 aaKnown RBP eCLIP22.88■■□□□ 1.252e-6■■■□□ 18.4
CPNE1-219ENST00000440240 U2AF1Q01081 240 aaKnown RBP eCLIP27.74■■■□□ 2.032e-6■□□□□ 8.5
CPNE1-219ENST00000440240 ZNF622Q969S3 477 aaKnown RBP eCLIP27.57■■■□□ 22e-6■■■□□ 15.2
CPNE1-219ENST00000440240 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.41■□□□□ 0.862e-6■■■■□ 24.6
CPNE1-219ENST00000440240 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.56■□□□□ 0.886e-6■□□□□ 9.8
Retrieved 67 of 67 RNA–protein pairs in 13.7 ms