RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 TNNT2P45379 298 aaPredicted RBP18.76■□□□□ 0.59
LIMD1-202ENST00000440097 PRAM1Q96QH2 718 aa18.76■□□□□ 0.59
LIMD1-202ENST00000440097 ADAMTS8Q9UP79 889 aa18.76■□□□□ 0.59
LIMD1-202ENST00000440097 MINK1Q8N4C8 1332 aaPredicted RBP18.76■□□□□ 0.59
LIMD1-202ENST00000440097 PAK3O75914 559 aaPredicted RBP18.76■□□□□ 0.59
LIMD1-202ENST00000440097 CEBPAP49715 358 aaPredicted RBP18.75■□□□□ 0.59
LIMD1-202ENST00000440097 NSD3Q9BZ95 1437 aa18.75■□□□□ 0.59
LIMD1-202ENST00000440097 NPC1L1Q9UHC9 1359 aa18.73■□□□□ 0.59
LIMD1-202ENST00000440097 MORC1Q86VD1 984 aa18.72■□□□□ 0.59
LIMD1-202ENST00000440097 ARHGEF28Q8N1W1 1705 aaKnown RBP18.72■□□□□ 0.59
LIMD1-202ENST00000440097 A2ML1A8K2U0 1454 aa18.72■□□□□ 0.59
LIMD1-202ENST00000440097 RIMS2Q9UQ26 1411 aa18.72■□□□□ 0.59
LIMD1-202ENST00000440097 SPATA31D1Q6ZQQ2 1576 aa18.72■□□□□ 0.59
LIMD1-202ENST00000440097 YTHDC2Q9H6S0 1430 aaKnown RBP18.71■□□□□ 0.59
LIMD1-202ENST00000440097 CDCA7LQ96GN5 454 aa18.69■□□□□ 0.58
LIMD1-202ENST00000440097 CGNL1Q0VF96 1302 aa18.68■□□□□ 0.58
LIMD1-202ENST00000440097 ALKQ9UM73 1620 aa18.68■□□□□ 0.58
LIMD1-202ENST00000440097 TULP4Q9NRJ4 1543 aa18.68■□□□□ 0.58
LIMD1-202ENST00000440097 TNRQ92752 1358 aa18.67■□□□□ 0.58
LIMD1-202ENST00000440097 BLMP54132 1417 aaPredicted RBP18.67■□□□□ 0.58
LIMD1-202ENST00000440097 CCDC146Q8IYE0 955 aa18.67■□□□□ 0.58
LIMD1-202ENST00000440097 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.66■□□□□ 0.58
LIMD1-202ENST00000440097 PDE3BQ13370 1112 aa18.66■□□□□ 0.58
LIMD1-202ENST00000440097 HDGFP51858 240 aaKnown RBP18.65■□□□□ 0.58
LIMD1-202ENST00000440097 WAPLQ7Z5K2 1190 aa18.65■□□□□ 0.58
LIMD1-202ENST00000440097 PRKCSHP14314 528 aaPredicted RBP18.65■□□□□ 0.58
LIMD1-202ENST00000440097 PTPRMP28827 1452 aa18.65■□□□□ 0.58
LIMD1-202ENST00000440097 PUS7Q96PZ0 661 aaKnown RBP18.64■□□□□ 0.58
LIMD1-202ENST00000440097 ANKRD36BQ8N2N9 1353 aa18.64■□□□□ 0.57
LIMD1-202ENST00000440097 CDK19Q9BWU1 502 aa18.63■□□□□ 0.57
LIMD1-202ENST00000440097 RCAN3Q9UKA8 241 aa18.62■□□□□ 0.57
LIMD1-202ENST00000440097 INSRP06213 1382 aa18.61■□□□□ 0.57
LIMD1-202ENST00000440097 RNF123Q5XPI4 1314 aa18.61■□□□□ 0.57
LIMD1-202ENST00000440097 TERF2IPQ9NYB0 399 aa18.61■□□□□ 0.57
LIMD1-202ENST00000440097 ATAD2Q6PL18 1390 aa18.61■□□□□ 0.57
LIMD1-202ENST00000440097 ANP32AP39687 249 aaKnown RBP18.6■□□□□ 0.57
LIMD1-202ENST00000440097 TXNDC2Q86VQ3 553 aa18.6■□□□□ 0.57
LIMD1-202ENST00000440097 IPO9Q96P70 1041 aaKnown RBP18.6■□□□□ 0.57
LIMD1-202ENST00000440097 A0A1W2PP64 1363 aa18.59■□□□□ 0.57
LIMD1-202ENST00000440097 MTHFSP49914 203 aa18.59■□□□□ 0.57
LIMD1-202ENST00000440097 APAF1O14727 1248 aa18.58■□□□□ 0.56
LIMD1-202ENST00000440097 HDGFL2Q7Z4V5 671 aaPredicted RBP18.58■□□□□ 0.56
LIMD1-202ENST00000440097 GGNBP2Q9H3C7 697 aa18.58■□□□□ 0.56
LIMD1-202ENST00000440097 CABP1Q9NZU7 370 aa18.58■□□□□ 0.56
LIMD1-202ENST00000440097 CCDC136Q96JN2 1154 aa18.58■□□□□ 0.56
LIMD1-202ENST00000440097 CFAP53Q96M91 514 aa18.57■□□□□ 0.56
LIMD1-202ENST00000440097 METP08581 1390 aa18.57■□□□□ 0.56
LIMD1-202ENST00000440097 PLEKHH1Q9ULM0 1364 aa18.57■□□□□ 0.56
LIMD1-202ENST00000440097 NINLQ9Y2I6 1382 aa18.57■□□□□ 0.56
LIMD1-202ENST00000440097 RTL5Q5HYW3 569 aaPredicted RBP18.57■□□□□ 0.56
LIMD1-202ENST00000440097 TMEM2Q9UHN6 1383 aa18.55■□□□□ 0.56
LIMD1-202ENST00000440097 ZBTB47Q9UFB7 747 aaPredicted RBP18.55■□□□□ 0.56
LIMD1-202ENST00000440097 POLR3AO14802 1390 aaPredicted RBP18.55■□□□□ 0.56
LIMD1-202ENST00000440097 RRP1P56182 461 aaKnown RBP18.54■□□□□ 0.56
LIMD1-202ENST00000440097 GOLGA2Q08379 1002 aa18.54■□□□□ 0.56
LIMD1-202ENST00000440097 ABCC11Q96J66 1382 aa18.53■□□□□ 0.56
LIMD1-202ENST00000440097 NEUROD2Q15784 382 aa18.53■□□□□ 0.56
LIMD1-202ENST00000440097 NSD2O96028 1365 aa18.53■□□□□ 0.56
LIMD1-202ENST00000440097 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.53■□□□□ 0.56
LIMD1-202ENST00000440097 ANO8Q9HCE9 1232 aaPredicted RBP18.52■□□□□ 0.56
LIMD1-202ENST00000440097 EID1Q9Y6B2 187 aa18.52■□□□□ 0.56
LIMD1-202ENST00000440097 SLC26A8Q96RN1 970 aa18.51■□□□□ 0.55
LIMD1-202ENST00000440097 LTKP29376 864 aa18.5■□□□□ 0.55
LIMD1-202ENST00000440097 FYB1O15117 783 aa18.5■□□□□ 0.55
LIMD1-202ENST00000440097 USP32Q8NFA0 1604 aa18.49■□□□□ 0.55
LIMD1-202ENST00000440097 PLIN1O60240 522 aa18.49■□□□□ 0.55
LIMD1-202ENST00000440097 WASLO00401 505 aaPredicted RBP18.49■□□□□ 0.55
LIMD1-202ENST00000440097 DLC1Q96QB1 1528 aa18.49■□□□□ 0.55
LIMD1-202ENST00000440097 NRXN3Q9Y4C0 1643 aa18.49■□□□□ 0.55
LIMD1-202ENST00000440097 UBR1Q8IWV7 1749 aa18.48■□□□□ 0.55
LIMD1-202ENST00000440097 U2AF1L5P0DN76 240 aaPredicted RBP18.48■□□□□ 0.55
LIMD1-202ENST00000440097 U2AF1Q01081 240 aaKnown RBP eCLIP18.48■□□□□ 0.55
LIMD1-202ENST00000440097 RRP7AQ9Y3A4 280 aaKnown RBP18.48■□□□□ 0.55
LIMD1-202ENST00000440097 NLRP1Q9C000 1473 aa18.47■□□□□ 0.55
LIMD1-202ENST00000440097 SETD1AO15047 1707 aaKnown RBP18.47■□□□□ 0.55
LIMD1-202ENST00000440097 U2SURPO15042 1029 aaKnown RBP18.47■□□□□ 0.55
LIMD1-202ENST00000440097 EXOC6Q8TAG9 804 aa18.47■□□□□ 0.55
LIMD1-202ENST00000440097 PPM1GO15355 546 aaPredicted RBP18.46■□□□□ 0.55
LIMD1-202ENST00000440097 DUSP27Q5VZP5 1158 aa18.46■□□□□ 0.55
LIMD1-202ENST00000440097 NUTM2FA1L443 756 aa18.46■□□□□ 0.55
LIMD1-202ENST00000440097 SPINK5Q9NQ38 1064 aaPredicted RBP18.46■□□□□ 0.55
LIMD1-202ENST00000440097 ZNF521Q96K83 1311 aa18.45■□□□□ 0.54
LIMD1-202ENST00000440097 CD163L1Q9NR16 1453 aa18.45■□□□□ 0.54
LIMD1-202ENST00000440097 RUNDC1Q96C34 613 aa18.45■□□□□ 0.54
LIMD1-202ENST00000440097 NCKAP5LQ9HCH0 1330 aa18.45■□□□□ 0.54
LIMD1-202ENST00000440097 NUDT16Q96DE0 195 aaKnown RBP18.44■□□□□ 0.54
LIMD1-202ENST00000440097 IL27Q8NEV9 243 aa18.44■□□□□ 0.54
LIMD1-202ENST00000440097 SLFN5Q08AF3 891 aa18.43■□□□□ 0.54
LIMD1-202ENST00000440097 PPIP5K1Q6PFW1 1433 aa18.43■□□□□ 0.54
LIMD1-202ENST00000440097 THEMISQ8N1K5 641 aaPredicted RBP18.43■□□□□ 0.54
LIMD1-202ENST00000440097 FER1L4A9Z1Z3 1794 aa18.43■□□□□ 0.54
LIMD1-202ENST00000440097 TCP11L2Q8N4U5 519 aa18.43■□□□□ 0.54
LIMD1-202ENST00000440097 DMRT2Q9Y5R5 561 aa18.43■□□□□ 0.54
LIMD1-202ENST00000440097 C3P01024 1663 aa18.43■□□□□ 0.54
LIMD1-202ENST00000440097 PLEKHG1Q9ULL1 1385 aa18.42■□□□□ 0.54
LIMD1-202ENST00000440097 CCDC61Q9Y6R9 512 aa18.42■□□□□ 0.54
LIMD1-202ENST00000440097 ROBO2Q9HCK4 1378 aa18.41■□□□□ 0.54
LIMD1-202ENST00000440097 FAM135BQ49AJ0 1406 aa18.41■□□□□ 0.54
LIMD1-202ENST00000440097 ADAMTS13Q76LX8 1427 aa18.41■□□□□ 0.54
LIMD1-202ENST00000440097 E9PSI1 815 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms