RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 RPGRIP1LQ68CZ1 1315 aa12.58□□□□□ -0.4
CUX1-206ENST00000437600 NEURL4Q96JN8 1562 aa12.58□□□□□ -0.4
CUX1-206ENST00000437600 KDM4FA0A1W2PPD8 638 aa12.58□□□□□ -0.4
CUX1-206ENST00000437600 TXNDC2Q86VQ3 553 aa12.58□□□□□ -0.4
CUX1-206ENST00000437600 PTPRMP28827 1452 aa12.58□□□□□ -0.4
CUX1-206ENST00000437600 NRXN1Q9ULB1 1477 aa12.58□□□□□ -0.4
CUX1-206ENST00000437600 AMER1Q5JTC6 1135 aaPredicted RBP12.57□□□□□ -0.4
CUX1-206ENST00000437600 ERICH6BQ5W0A0 696 aa12.57□□□□□ -0.4
CUX1-206ENST00000437600 CARD14Q9BXL6 1004 aa12.57□□□□□ -0.4
CUX1-206ENST00000437600 CABP2Q9NPB3 220 aa12.57□□□□□ -0.4
CUX1-206ENST00000437600 TMEM2Q9UHN6 1383 aa12.57□□□□□ -0.4
CUX1-206ENST00000437600 ZFYVE9O95405 1425 aa12.56□□□□□ -0.4
CUX1-206ENST00000437600 RRP1P56182 461 aaKnown RBP12.56□□□□□ -0.4
CUX1-206ENST00000437600 C20orf194Q5TEA3 1177 aa12.56□□□□□ -0.4
CUX1-206ENST00000437600 MINK1Q8N4C8 1332 aaPredicted RBP12.56□□□□□ -0.4
CUX1-206ENST00000437600 WDR43Q15061 677 aaKnown RBP eCLIP12.55□□□□□ -0.4
CUX1-206ENST00000437600 NEUROD2Q15784 382 aa12.55□□□□□ -0.4
CUX1-206ENST00000437600 SETD1BQ9UPS6 1966 aaKnown RBP12.55□□□□□ -0.4
CUX1-206ENST00000437600 ASXL1Q8IXJ9 1541 aa12.55□□□□□ -0.4
CUX1-206ENST00000437600 HSPA2P54652 639 aa12.54□□□□□ -0.4
CUX1-206ENST00000437600 ADGRB1O14514 1584 aa12.54□□□□□ -0.4
CUX1-206ENST00000437600 ALKQ9UM73 1620 aa12.54□□□□□ -0.4
CUX1-206ENST00000437600 NLRP1Q9C000 1473 aa12.54□□□□□ -0.4
CUX1-206ENST00000437600 RNF123Q5XPI4 1314 aa12.54□□□□□ -0.4
CUX1-206ENST00000437600 CEP170BQ9Y4F5 1589 aaPredicted RBP12.54□□□□□ -0.4
CUX1-206ENST00000437600 PRAM1Q96QH2 718 aa12.54□□□□□ -0.4
CUX1-206ENST00000437600 METP08581 1390 aa12.53□□□□□ -0.4
CUX1-206ENST00000437600 WAPLQ7Z5K2 1190 aa12.53□□□□□ -0.4
CUX1-206ENST00000437600 KIAA1210Q9ULL0 1709 aa12.53□□□□□ -0.4
CUX1-206ENST00000437600 SRPK2P78362 688 aaKnown RBP12.53□□□□□ -0.4
CUX1-206ENST00000437600 POGKQ9P215 609 aa12.53□□□□□ -0.4
CUX1-206ENST00000437600 NRXN3Q9Y4C0 1643 aa12.52□□□□□ -0.4
CUX1-206ENST00000437600 APAF1O14727 1248 aa12.52□□□□□ -0.4
CUX1-206ENST00000437600 THEMISQ8N1K5 641 aaPredicted RBP12.52□□□□□ -0.41
CUX1-206ENST00000437600 RBM33Q96EV2 1170 aaKnown RBP12.52□□□□□ -0.41
CUX1-206ENST00000437600 SPINK5Q9NQ38 1064 aaPredicted RBP12.52□□□□□ -0.41
CUX1-206ENST00000437600 NPM2Q86SE8 214 aaKnown RBP12.51□□□□□ -0.41
CUX1-206ENST00000437600 EID1Q9Y6B2 187 aa12.51□□□□□ -0.41
CUX1-206ENST00000437600 CRBNQ96SW2 442 aa12.5□□□□□ -0.41
CUX1-206ENST00000437600 RRP7AQ9Y3A4 280 aaKnown RBP12.5□□□□□ -0.41
CUX1-206ENST00000437600 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
CUX1-206ENST00000437600 PLEKHH1Q9ULM0 1364 aa12.5□□□□□ -0.41
CUX1-206ENST00000437600 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.49□□□□□ -0.41
CUX1-206ENST00000437600 KDM5AP29375 1690 aaKnown RBP12.49□□□□□ -0.41
CUX1-206ENST00000437600 MYOM1P52179 1685 aa12.49□□□□□ -0.41
CUX1-206ENST00000437600 YTHDC2Q9H6S0 1430 aaKnown RBP12.49□□□□□ -0.41
CUX1-206ENST00000437600 SETD1AO15047 1707 aaKnown RBP12.49□□□□□ -0.41
CUX1-206ENST00000437600 ARHGEF28Q8N1W1 1705 aaKnown RBP12.49□□□□□ -0.41
CUX1-206ENST00000437600 NCKAP5LQ9HCH0 1330 aa12.48□□□□□ -0.41
CUX1-206ENST00000437600 QRICH2Q9H0J4 1663 aa12.48□□□□□ -0.41
CUX1-206ENST00000437600 NSD3Q9BZ95 1437 aa12.48□□□□□ -0.41
CUX1-206ENST00000437600 EVC2Q86UK5 1308 aa12.48□□□□□ -0.41
CUX1-206ENST00000437600 SETBP1Q9Y6X0 1596 aa12.47□□□□□ -0.41
CUX1-206ENST00000437600 NUTM2FA1L443 756 aa12.47□□□□□ -0.41
CUX1-206ENST00000437600 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
CUX1-206ENST00000437600 ADAMTS13Q76LX8 1427 aa12.47□□□□□ -0.41
CUX1-206ENST00000437600 HDGFP51858 240 aaKnown RBP12.46□□□□□ -0.41
CUX1-206ENST00000437600 PDE3BQ13370 1112 aa12.46□□□□□ -0.42
CUX1-206ENST00000437600 DUSP27Q5VZP5 1158 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 MORC1Q86VD1 984 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 SLIT1O75093 1534 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 SBNO2Q9Y2G9 1366 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 FANCIQ9NVI1 1328 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 BCAR3O75815 825 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 PLEKHG5O94827 1062 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 ANKLE2Q86XL3 938 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 ARHGAP23Q9P227 1491 aa12.45□□□□□ -0.42
CUX1-206ENST00000437600 GOLGA2Q08379 1002 aa12.44□□□□□ -0.42
CUX1-206ENST00000437600 PLEKHG1Q9ULL1 1385 aa12.44□□□□□ -0.42
CUX1-206ENST00000437600 NBR1Q14596 966 aa12.43□□□□□ -0.42
CUX1-206ENST00000437600 GGNBP2Q9H3C7 697 aa12.43□□□□□ -0.42
CUX1-206ENST00000437600 PTPRUQ92729 1446 aa12.43□□□□□ -0.42
CUX1-206ENST00000437600 TULP4Q9NRJ4 1543 aa12.43□□□□□ -0.42
CUX1-206ENST00000437600 ZNF142P52746 1687 aaPredicted RBP12.43□□□□□ -0.42
CUX1-206ENST00000437600 CDK19Q9BWU1 502 aa12.43□□□□□ -0.42
CUX1-206ENST00000437600 AMOTL2Q9Y2J4 779 aa12.43□□□□□ -0.42
CUX1-206ENST00000437600 FBLN1P23142 703 aa12.42□□□□□ -0.42
CUX1-206ENST00000437600 ROBO2Q9HCK4 1378 aa12.42□□□□□ -0.42
CUX1-206ENST00000437600 CABP1Q9NZU7 370 aa12.42□□□□□ -0.42
CUX1-206ENST00000437600 KCNA6P17658 529 aa12.41□□□□□ -0.42
CUX1-206ENST00000437600 ANO8Q9HCE9 1232 aaPredicted RBP12.41□□□□□ -0.42
CUX1-206ENST00000437600 MTHFSP49914 203 aa12.4□□□□□ -0.42
CUX1-206ENST00000437600 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.4□□□□□ -0.423e-6■□□□□ 10.3
CUX1-206ENST00000437600 A0A1W2PP64 1363 aa12.4□□□□□ -0.42
CUX1-206ENST00000437600 BCL2L13Q9BXK5 485 aa12.4□□□□□ -0.43
CUX1-206ENST00000437600 CGNL1Q0VF96 1302 aa12.39□□□□□ -0.43
CUX1-206ENST00000437600 SLFN5Q08AF3 891 aa12.39□□□□□ -0.43
CUX1-206ENST00000437600 BLMP54132 1417 aaPredicted RBP12.38□□□□□ -0.43
CUX1-206ENST00000437600 FRAT1Q92837 279 aaPredicted RBP12.38□□□□□ -0.43
CUX1-206ENST00000437600 PDE4AP27815 886 aa12.37□□□□□ -0.43
CUX1-206ENST00000437600 MED14O60244 1454 aa12.37□□□□□ -0.43
CUX1-206ENST00000437600 ABCC11Q96J66 1382 aa12.37□□□□□ -0.43
CUX1-206ENST00000437600 TBX22Q9Y458 520 aa12.37□□□□□ -0.43
CUX1-206ENST00000437600 PPM1GO15355 546 aaPredicted RBP12.36□□□□□ -0.43
CUX1-206ENST00000437600 RGS3P49796 1198 aa12.36□□□□□ -0.43
CUX1-206ENST00000437600 UBE2Q2Q8WVN8 375 aa12.36□□□□□ -0.43
CUX1-206ENST00000437600 ANKRD36BQ8N2N9 1353 aa12.36□□□□□ -0.43
CUX1-206ENST00000437600 LMTK3Q96Q04 1460 aa12.36□□□□□ -0.43
CUX1-206ENST00000437600 NPHP4O75161 1426 aaPredicted RBP12.36□□□□□ -0.43
CUX1-206ENST00000437600 NPC1L1Q9UHC9 1359 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms