RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 NEXMIFQ5QGS0 1516 aa18.73■□□□□ 0.59
LIG1-202ENST00000427526 ADGRB1O14514 1584 aa18.73■□□□□ 0.59
LIG1-202ENST00000427526 SETBP1Q9Y6X0 1596 aa18.73■□□□□ 0.59
LIG1-202ENST00000427526 NBR1Q14596 966 aa18.73■□□□□ 0.59
LIG1-202ENST00000427526 CARD14Q9BXL6 1004 aa18.72■□□□□ 0.59
LIG1-202ENST00000427526 PREX1Q8TCU6 1659 aa18.71■□□□□ 0.59
LIG1-202ENST00000427526 AGLP35573 1532 aa18.71■□□□□ 0.59
LIG1-202ENST00000427526 DEKP35659 375 aaKnown RBP18.71■□□□□ 0.59
LIG1-202ENST00000427526 MYO3AQ8NEV4 1616 aa18.7■□□□□ 0.58
LIG1-202ENST00000427526 SBNO2Q9Y2G9 1366 aa18.7■□□□□ 0.58
LIG1-202ENST00000427526 PPP6R1Q9UPN7 881 aa18.7■□□□□ 0.58
LIG1-202ENST00000427526 REREQ9P2R6 1566 aa18.69■□□□□ 0.58
LIG1-202ENST00000427526 NPM2Q86SE8 214 aaKnown RBP18.69■□□□□ 0.58
LIG1-202ENST00000427526 SKAP1Q86WV1 359 aa18.69■□□□□ 0.58
LIG1-202ENST00000427526 STAG3Q9UJ98 1225 aa18.68■□□□□ 0.58
LIG1-202ENST00000427526 CCDC146Q8IYE0 955 aa18.68■□□□□ 0.58
LIG1-202ENST00000427526 SPINK5Q9NQ38 1064 aaPredicted RBP18.67■□□□□ 0.58
LIG1-202ENST00000427526 TMEM131LA2VDJ0 1609 aa18.67■□□□□ 0.58
LIG1-202ENST00000427526 APAF1O14727 1248 aa18.67■□□□□ 0.58
LIG1-202ENST00000427526 STK26Q9P289 416 aa18.67■□□□□ 0.58
LIG1-202ENST00000427526 CENPQQ7L2Z9 268 aaPredicted RBP18.66■□□□□ 0.58
LIG1-202ENST00000427526 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.66■□□□□ 0.58
LIG1-202ENST00000427526 SAFB2Q14151 953 aaKnown RBP eCLIP18.66■□□□□ 0.58
LIG1-202ENST00000427526 ZFYVE9O95405 1425 aa18.65■□□□□ 0.58
LIG1-202ENST00000427526 MYO5BQ9ULV0 1848 aa18.65■□□□□ 0.58
LIG1-202ENST00000427526 CLTCQ00610 1675 aaKnown RBP18.65■□□□□ 0.58
LIG1-202ENST00000427526 NKTRP30414 1462 aaKnown RBP18.65■□□□□ 0.58
LIG1-202ENST00000427526 SLC12A5Q9H2X9 1139 aa18.64■□□□□ 0.57
LIG1-202ENST00000427526 NGEFQ8N5V2 710 aa18.63■□□□□ 0.57
LIG1-202ENST00000427526 ARHGEF40Q8TER5 1519 aa18.63■□□□□ 0.57
LIG1-202ENST00000427526 POLR3AO14802 1390 aaPredicted RBP18.62■□□□□ 0.57
LIG1-202ENST00000427526 E9PSI1 815 aa18.62■□□□□ 0.57
LIG1-202ENST00000427526 ESF1Q9H501 851 aaKnown RBP18.62■□□□□ 0.57
LIG1-202ENST00000427526 QRICH2Q9H0J4 1663 aa18.61■□□□□ 0.57
LIG1-202ENST00000427526 DMRT2Q9Y5R5 561 aa18.6■□□□□ 0.57
LIG1-202ENST00000427526 ZMYM3Q14202 1370 aa18.59■□□□□ 0.57
LIG1-202ENST00000427526 BCAR3O75815 825 aa18.58■□□□□ 0.56
LIG1-202ENST00000427526 CABP2Q9NPB3 220 aa18.58■□□□□ 0.56
LIG1-202ENST00000427526 EVC2Q86UK5 1308 aa18.57■□□□□ 0.56
LIG1-202ENST00000427526 SPATA31D1Q6ZQQ2 1576 aa18.57■□□□□ 0.56
LIG1-202ENST00000427526 A2ML1A8K2U0 1454 aa18.57■□□□□ 0.56
LIG1-202ENST00000427526 RTL5Q5HYW3 569 aaPredicted RBP18.57■□□□□ 0.56
LIG1-202ENST00000427526 NSD3Q9BZ95 1437 aa18.55■□□□□ 0.56
LIG1-202ENST00000427526 PRAM1Q96QH2 718 aa18.55■□□□□ 0.56
LIG1-202ENST00000427526 SHPRHQ149N8 1683 aa18.55■□□□□ 0.56
LIG1-202ENST00000427526 ARHGEF28Q8N1W1 1705 aaKnown RBP18.55■□□□□ 0.56
LIG1-202ENST00000427526 WWC1Q8IX03 1113 aa18.55■□□□□ 0.56
LIG1-202ENST00000427526 DDRGK1Q96HY6 314 aa18.55■□□□□ 0.56
LIG1-202ENST00000427526 C8orf34Q49A92 452 aa18.54■□□□□ 0.56
LIG1-202ENST00000427526 TULP4Q9NRJ4 1543 aa18.54■□□□□ 0.56
LIG1-202ENST00000427526 YTHDC2Q9H6S0 1430 aaKnown RBP18.54■□□□□ 0.56
LIG1-202ENST00000427526 MINK1Q8N4C8 1332 aaPredicted RBP18.54■□□□□ 0.56
LIG1-202ENST00000427526 FAM161AQ3B820 660 aa18.53■□□□□ 0.56
LIG1-202ENST00000427526 UBE2Q2Q8WVN8 375 aa18.53■□□□□ 0.56
LIG1-202ENST00000427526 POGKQ9P215 609 aa18.53■□□□□ 0.56
LIG1-202ENST00000427526 RIMS2Q9UQ26 1411 aa18.53■□□□□ 0.56
LIG1-202ENST00000427526 MORC1Q86VD1 984 aa18.52■□□□□ 0.56
LIG1-202ENST00000427526 ALKQ9UM73 1620 aa18.52■□□□□ 0.56
LIG1-202ENST00000427526 USP32Q8NFA0 1604 aa18.52■□□□□ 0.55
LIG1-202ENST00000427526 PDE3AQ14432 1141 aa18.52■□□□□ 0.55
LIG1-202ENST00000427526 USP35Q9P2H5 1018 aa18.52■□□□□ 0.55
LIG1-202ENST00000427526 SRPK2P78362 688 aaKnown RBP18.51■□□□□ 0.55
LIG1-202ENST00000427526 PTPRMP28827 1452 aa18.51■□□□□ 0.55
LIG1-202ENST00000427526 TNNT2P45379 298 aaPredicted RBP18.51■□□□□ 0.55
LIG1-202ENST00000427526 PUS7Q96PZ0 661 aaKnown RBP18.51■□□□□ 0.55
LIG1-202ENST00000427526 LAS1LQ9Y4W2 734 aaKnown RBP18.5■□□□□ 0.55
LIG1-202ENST00000427526 PHF23Q9BUL5 403 aaPredicted RBP18.5■□□□□ 0.55
LIG1-202ENST00000427526 IQSEC2Q5JU85 1478 aa18.49■□□□□ 0.55
LIG1-202ENST00000427526 PPM1GO15355 546 aaPredicted RBP18.49■□□□□ 0.55
LIG1-202ENST00000427526 RUNDC1Q96C34 613 aa18.49■□□□□ 0.55
LIG1-202ENST00000427526 NINLQ9Y2I6 1382 aa18.49■□□□□ 0.55
LIG1-202ENST00000427526 CGNL1Q0VF96 1302 aa18.48■□□□□ 0.55
LIG1-202ENST00000427526 TRHP20396 242 aaPredicted RBP18.48■□□□□ 0.55
LIG1-202ENST00000427526 IGHDP01880 384 aa18.47■□□□□ 0.55
LIG1-202ENST00000427526 WAPLQ7Z5K2 1190 aa18.47■□□□□ 0.55
LIG1-202ENST00000427526 NEFMP07197 916 aa18.47■□□□□ 0.55
LIG1-202ENST00000427526 CEBPAP49715 358 aaPredicted RBP18.47■□□□□ 0.55
LIG1-202ENST00000427526 TNRQ92752 1358 aa18.47■□□□□ 0.55
LIG1-202ENST00000427526 TCP11L2Q8N4U5 519 aa18.45■□□□□ 0.54
LIG1-202ENST00000427526 ANKRD36BQ8N2N9 1353 aa18.45■□□□□ 0.54
LIG1-202ENST00000427526 RGS3P49796 1198 aa18.45■□□□□ 0.54
LIG1-202ENST00000427526 MTHFSP49914 203 aa18.44■□□□□ 0.54
LIG1-202ENST00000427526 PLPPR3Q6T4P5 718 aa18.44■□□□□ 0.54
LIG1-202ENST00000427526 WDR63Q8IWG1 891 aa18.44■□□□□ 0.54
LIG1-202ENST00000427526 CDK19Q9BWU1 502 aa18.44■□□□□ 0.54
LIG1-202ENST00000427526 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.44■□□□□ 0.54
LIG1-202ENST00000427526 CCDC27Q2M243 656 aa18.43■□□□□ 0.54
LIG1-202ENST00000427526 CLUAP1Q96AJ1 413 aa18.43■□□□□ 0.54
LIG1-202ENST00000427526 RARSP54136 660 aaKnown RBP18.43■□□□□ 0.54
LIG1-202ENST00000427526 RRP7AQ9Y3A4 280 aaKnown RBP18.43■□□□□ 0.54
LIG1-202ENST00000427526 PANK1Q8TE04 598 aa18.42■□□□□ 0.54
LIG1-202ENST00000427526 METP08581 1390 aa18.42■□□□□ 0.54
LIG1-202ENST00000427526 NEUROD2Q15784 382 aa18.42■□□□□ 0.54
LIG1-202ENST00000427526 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
LIG1-202ENST00000427526 A0A1W2PP64 1363 aa18.42■□□□□ 0.54
LIG1-202ENST00000427526 COG6Q9Y2V7 657 aa18.41■□□□□ 0.54
LIG1-202ENST00000427526 NSD2O96028 1365 aa18.41■□□□□ 0.54
LIG1-202ENST00000427526 CFAP53Q96M91 514 aa18.4■□□□□ 0.54
LIG1-202ENST00000427526 SLC4A3P48751 1232 aa18.39■□□□□ 0.54
LIG1-202ENST00000427526 TXNDC2Q86VQ3 553 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms