RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SAFB2Q14151 953 aaKnown RBP eCLIP26.76■■□□□ 1.87
USP39-204ENST00000409766 ANKRD36BQ8N2N9 1353 aa26.76■■□□□ 1.87
USP39-204ENST00000409766 RIMS2Q9UQ26 1411 aa26.75■■□□□ 1.87
USP39-204ENST00000409766 CABP2Q9NPB3 220 aa26.75■■□□□ 1.87
USP39-204ENST00000409766 ESF1Q9H501 851 aaKnown RBP26.73■■□□□ 1.87
USP39-204ENST00000409766 PRAM1Q96QH2 718 aa26.73■■□□□ 1.87
USP39-204ENST00000409766 RCAN3Q9UKA8 241 aa26.73■■□□□ 1.87
USP39-204ENST00000409766 SETD1AO15047 1707 aaKnown RBP26.72■■□□□ 1.87
USP39-204ENST00000409766 POLR3AO14802 1390 aaPredicted RBP26.72■■□□□ 1.87
USP39-204ENST00000409766 NINLQ9Y2I6 1382 aa26.72■■□□□ 1.87
USP39-204ENST00000409766 CGNL1Q0VF96 1302 aa26.71■■□□□ 1.87
USP39-204ENST00000409766 MORC1Q86VD1 984 aa26.71■■□□□ 1.87
USP39-204ENST00000409766 PLEKHH1Q9ULM0 1364 aa26.7■■□□□ 1.86
USP39-204ENST00000409766 B4GALNT3Q6L9W6 998 aa26.7■■□□□ 1.86
USP39-204ENST00000409766 POGKQ9P215 609 aa26.69■■□□□ 1.86
USP39-204ENST00000409766 RRP1P56182 461 aaKnown RBP26.68■■□□□ 1.86
USP39-204ENST00000409766 ZNF521Q96K83 1311 aa26.68■■□□□ 1.86
USP39-204ENST00000409766 SRPK2P78362 688 aaKnown RBP26.67■■□□□ 1.86
USP39-204ENST00000409766 MINK1Q8N4C8 1332 aaPredicted RBP26.67■■□□□ 1.86
USP39-204ENST00000409766 DLC1Q96QB1 1528 aa26.67■■□□□ 1.86
USP39-204ENST00000409766 NSD2O96028 1365 aa26.66■■□□□ 1.86
USP39-204ENST00000409766 ATAD2Q6PL18 1390 aa26.66■■□□□ 1.86
USP39-204ENST00000409766 NRXN3Q9Y4C0 1643 aa26.65■■□□□ 1.86
USP39-204ENST00000409766 SHPRHQ149N8 1683 aa26.64■■□□□ 1.85
USP39-204ENST00000409766 A0A1W2PP64 1363 aa26.63■■□□□ 1.85
USP39-204ENST00000409766 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.63■■□□□ 1.85
USP39-204ENST00000409766 TNRQ92752 1358 aa26.62■■□□□ 1.85
USP39-204ENST00000409766 CCDC146Q8IYE0 955 aa26.62■■□□□ 1.85
USP39-204ENST00000409766 ABCC11Q96J66 1382 aa26.61■■□□□ 1.85
USP39-204ENST00000409766 TNNT2P45379 298 aaPredicted RBP26.61■■□□□ 1.85
USP39-204ENST00000409766 CD163L1Q9NR16 1453 aa26.59■■□□□ 1.85
USP39-204ENST00000409766 CDK19Q9BWU1 502 aa26.58■■□□□ 1.85
USP39-204ENST00000409766 UBR1Q8IWV7 1749 aa26.58■■□□□ 1.85
USP39-204ENST00000409766 APAF1O14727 1248 aa26.58■■□□□ 1.85
USP39-204ENST00000409766 GOLGA2Q08379 1002 aa26.58■■□□□ 1.85
USP39-204ENST00000409766 DUSP27Q5VZP5 1158 aa26.57■■□□□ 1.84
USP39-204ENST00000409766 TERF2IPQ9NYB0 399 aa26.56■■□□□ 1.84
USP39-204ENST00000409766 MTHFSP49914 203 aa26.56■■□□□ 1.84
USP39-204ENST00000409766 WAPLQ7Z5K2 1190 aa26.55■■□□□ 1.84
USP39-204ENST00000409766 NGEFQ8N5V2 710 aa26.55■■□□□ 1.84
USP39-204ENST00000409766 HDGFP51858 240 aaKnown RBP26.55■■□□□ 1.84
USP39-204ENST00000409766 METP08581 1390 aa26.54■■□□□ 1.84
USP39-204ENST00000409766 CCDC136Q96JN2 1154 aa26.53■■□□□ 1.84
USP39-204ENST00000409766 ANKRD26Q9UPS8 1709 aa26.53■■□□□ 1.84
USP39-204ENST00000409766 SLFN5Q08AF3 891 aa26.53■■□□□ 1.84
USP39-204ENST00000409766 TMEM2Q9UHN6 1383 aa26.52■■□□□ 1.84
USP39-204ENST00000409766 TRMT2AQ8IZ69 625 aaKnown RBP26.52■■□□□ 1.84
USP39-204ENST00000409766 MED14O60244 1454 aa26.51■■□□□ 1.83
USP39-204ENST00000409766 CFAP53Q96M91 514 aa26.51■■□□□ 1.83
USP39-204ENST00000409766 RBM19Q9Y4C8 960 aaKnown RBP26.51■■□□□ 1.83
USP39-204ENST00000409766 KNDC1Q76NI1 1749 aa26.5■■□□□ 1.83
USP39-204ENST00000409766 NLRP1Q9C000 1473 aa26.5■■□□□ 1.83
USP39-204ENST00000409766 EXOC6Q8TAG9 804 aa26.49■■□□□ 1.83
USP39-204ENST00000409766 CABP1Q9NZU7 370 aa26.49■■□□□ 1.83
USP39-204ENST00000409766 FYB1O15117 783 aa26.48■■□□□ 1.83
USP39-204ENST00000409766 HDGFL2Q7Z4V5 671 aaPredicted RBP26.48■■□□□ 1.83
USP39-204ENST00000409766 TECPR2O15040 1411 aa26.47■■□□□ 1.83
USP39-204ENST00000409766 GGNBP2Q9H3C7 697 aa26.47■■□□□ 1.83
USP39-204ENST00000409766 SIRT1Q96EB6 747 aa26.46■■□□□ 1.83
USP39-204ENST00000409766 FAM135BQ49AJ0 1406 aa26.46■■□□□ 1.83
USP39-204ENST00000409766 RUNDC1Q96C34 613 aa26.45■■□□□ 1.82
USP39-204ENST00000409766 SPINK5Q9NQ38 1064 aaPredicted RBP26.45■■□□□ 1.82
USP39-204ENST00000409766 ATP7BP35670 1465 aa26.45■■□□□ 1.82
USP39-204ENST00000409766 PLIN1O60240 522 aa26.44■■□□□ 1.82
USP39-204ENST00000409766 KIF20BQ96Q89 1820 aa26.44■■□□□ 1.82
USP39-204ENST00000409766 IQSEC2Q5JU85 1478 aa26.44■■□□□ 1.82
USP39-204ENST00000409766 CPS1P31327 1500 aa26.44■■□□□ 1.82
USP39-204ENST00000409766 TXNDC2Q86VQ3 553 aa26.43■■□□□ 1.82
USP39-204ENST00000409766 E9PSI1 815 aa26.43■■□□□ 1.82
USP39-204ENST00000409766 C3P01024 1663 aa26.42■■□□□ 1.82
USP39-204ENST00000409766 FER1L4A9Z1Z3 1794 aa26.42■■□□□ 1.82
USP39-204ENST00000409766 WASLO00401 505 aaPredicted RBP26.41■■□□□ 1.82
USP39-204ENST00000409766 WWC1Q8IX03 1113 aa26.41■■□□□ 1.82
USP39-204ENST00000409766 ADAMTS13Q76LX8 1427 aa26.41■■□□□ 1.82
USP39-204ENST00000409766 NKTRP30414 1462 aaKnown RBP26.41■■□□□ 1.82
USP39-204ENST00000409766 CEBPAP49715 358 aaPredicted RBP26.41■■□□□ 1.82
USP39-204ENST00000409766 DMRT2Q9Y5R5 561 aa26.4■■□□□ 1.82
USP39-204ENST00000409766 COL3A1P02461 1466 aaPredicted RBP26.39■■□□□ 1.81
USP39-204ENST00000409766 PLEKHG1Q9ULL1 1385 aa26.38■■□□□ 1.81
USP39-204ENST00000409766 TCP11L2Q8N4U5 519 aa26.38■■□□□ 1.81
USP39-204ENST00000409766 PHF23Q9BUL5 403 aaPredicted RBP26.38■■□□□ 1.81
USP39-204ENST00000409766 LTKP29376 864 aa26.37■■□□□ 1.81
USP39-204ENST00000409766 CPSF1Q10570 1443 aaKnown RBP26.36■■□□□ 1.81
USP39-204ENST00000409766 PPIP5K1Q6PFW1 1433 aa26.35■■□□□ 1.81
USP39-204ENST00000409766 U2AF1L5P0DN76 240 aaPredicted RBP26.34■■□□□ 1.81
USP39-204ENST00000409766 U2AF1Q01081 240 aaKnown RBP eCLIP26.34■■□□□ 1.81
USP39-204ENST00000409766 NCBP3Q53F19 620 aaKnown RBP26.34■■□□□ 1.81
USP39-204ENST00000409766 CRBNQ96SW2 442 aa26.34■■□□□ 1.81
USP39-204ENST00000409766 ADGRB2O60241 1585 aa26.33■■□□□ 1.8
USP39-204ENST00000409766 ROBO2Q9HCK4 1378 aa26.33■■□□□ 1.8
USP39-204ENST00000409766 CCDC27Q2M243 656 aa26.32■■□□□ 1.8
USP39-204ENST00000409766 RRP7AQ9Y3A4 280 aaKnown RBP26.32■■□□□ 1.8
USP39-204ENST00000409766 SLIT1O75093 1534 aa26.32■■□□□ 1.8
USP39-204ENST00000409766 C20orf194Q5TEA3 1177 aa26.32■■□□□ 1.8
USP39-204ENST00000409766 PNPLA6Q8IY17 1366 aa26.31■■□□□ 1.8
USP39-204ENST00000409766 NEUROD2Q15784 382 aa26.31■■□□□ 1.8
USP39-204ENST00000409766 NUDT16Q96DE0 195 aaKnown RBP26.31■■□□□ 1.8
USP39-204ENST00000409766 ARHGAP23Q9P227 1491 aa26.31■■□□□ 1.8
USP39-204ENST00000409766 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.31■■□□□ 1.8
USP39-204ENST00000409766 EDC4Q6P2E9 1401 aaKnown RBP26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms