RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CCDC144AA2RUR9 1427 aa42.53■■■■■ 4.4
HMGB1-205ENST00000399494 SPATA31E1Q6ZUB1 1445 aa42.51■■■■■ 4.4
HMGB1-205ENST00000399494 ESCO1Q5FWF5 840 aa42.47■■■■■ 4.39
HMGB1-205ENST00000399494 STK26Q9P289 416 aa42.46■■■■■ 4.39
HMGB1-205ENST00000399494 ANKRD30BQ9BXX2 1392 aa42.46■■■■■ 4.39
HMGB1-205ENST00000399494 WAPLQ7Z5K2 1190 aa42.45■■■■■ 4.39
HMGB1-205ENST00000399494 RGS12O14924 1447 aa42.43■■■■■ 4.38
HMGB1-205ENST00000399494 CDC42BPGQ6DT37 1551 aa42.42■■■■■ 4.38
HMGB1-205ENST00000399494 LRPPRCP42704 1394 aaKnown RBP42.41■■■■■ 4.38
HMGB1-205ENST00000399494 TECPR2O15040 1411 aa42.41■■■■■ 4.38
HMGB1-205ENST00000399494 NPHP3Q7Z494 1330 aa42.41■■■■■ 4.38
HMGB1-205ENST00000399494 TMEM132EQ6IEE7 984 aa42.4■■■■■ 4.38
HMGB1-205ENST00000399494 ABCC11Q96J66 1382 aa42.39■■■■■ 4.38
HMGB1-205ENST00000399494 FNBP4Q8N3X1 1017 aaPredicted RBP42.38■■■■■ 4.37
HMGB1-205ENST00000399494 USP21Q9UK80 565 aa42.38■■■■■ 4.37
HMGB1-205ENST00000399494 IFT172Q9UG01 1749 aa42.37■■■■■ 4.37
HMGB1-205ENST00000399494 FOXO3O43524 673 aa42.36■■■■■ 4.37
HMGB1-205ENST00000399494 COL22A1Q8NFW1 1626 aaPredicted RBP42.35■■■■■ 4.37
HMGB1-205ENST00000399494 NUTM2FA1L443 756 aa42.33■■■■■ 4.37
HMGB1-205ENST00000399494 PXDNQ92626 1479 aa42.33■■■■■ 4.37
HMGB1-205ENST00000399494 PIK3C2GO75747 1445 aa42.32■■■■■ 4.37
HMGB1-205ENST00000399494 PLEKHH1Q9ULM0 1364 aa42.32■■■■■ 4.37
HMGB1-205ENST00000399494 XPCQ01831 940 aaPredicted RBP42.31■■■■■ 4.36
HMGB1-205ENST00000399494 TRPC5Q9UL62 973 aaPredicted RBP42.31■■■■■ 4.36
HMGB1-205ENST00000399494 MYOM2P54296 1465 aa42.29■■■■■ 4.36
HMGB1-205ENST00000399494 YTHDC2Q9H6S0 1430 aaKnown RBP42.26■■■■■ 4.36
HMGB1-205ENST00000399494 ACIN1Q9UKV3 1341 aaKnown RBP42.25■■■■■ 4.35
HMGB1-205ENST00000399494 SIRT1Q96EB6 747 aa42.25■■■■■ 4.35
HMGB1-205ENST00000399494 C14orf93Q9H972 538 aaKnown RBP42.25■■■■■ 4.35
HMGB1-205ENST00000399494 KNDC1Q76NI1 1749 aa42.25■■■■■ 4.35
HMGB1-205ENST00000399494 ATRNO75882 1429 aa42.22■■■■■ 4.35
HMGB1-205ENST00000399494 BCL9LQ86UU0 1499 aa42.17■■■■■ 4.34
HMGB1-205ENST00000399494 FMN2Q9NZ56 1722 aa42.17■■■■■ 4.34
HMGB1-205ENST00000399494 CFAP70Q5T0N1 1121 aa42.16■■■■■ 4.34
HMGB1-205ENST00000399494 NRXN1Q9ULB1 1477 aa42.14■■■■■ 4.34
HMGB1-205ENST00000399494 SPATA31A3Q5VYP0 1347 aa42.14■■■■■ 4.34
HMGB1-205ENST00000399494 ATAD2Q6PL18 1390 aa42.14■■■■■ 4.34
HMGB1-205ENST00000399494 KRT28Q7Z3Y7 464 aa42.12■■■■■ 4.33
HMGB1-205ENST00000399494 DHX57Q6P158 1386 aaKnown RBP42.12■■■■■ 4.33
HMGB1-205ENST00000399494 MARF1Q9Y4F3 1742 aaKnown RBP42.12■■■■■ 4.33
HMGB1-205ENST00000399494 KIF1AQ12756 1690 aa42.06■■■■■ 4.32
HMGB1-205ENST00000399494 GJD4Q96KN9 370 aaPredicted RBP42.06■■■■■ 4.32
HMGB1-205ENST00000399494 PHF8Q9UPP1 1060 aa42.05■■■■■ 4.32
HMGB1-205ENST00000399494 PRAM1Q96QH2 718 aa42.03■■■■■ 4.32
HMGB1-205ENST00000399494 RAB3GAP2Q9H2M9 1393 aa42.01■■■■■ 4.31
HMGB1-205ENST00000399494 SAFB2Q14151 953 aaKnown RBP eCLIP42■■■■■ 4.31
HMGB1-205ENST00000399494 UNC5CLQ8IV45 518 aa42■■■■■ 4.31
HMGB1-205ENST00000399494 RGPD8O14715 1765 aaPredicted RBP42■■■■■ 4.31
HMGB1-205ENST00000399494 PSME1Q06323 249 aa41.99■■■■■ 4.31
HMGB1-205ENST00000399494 SLIT2O94813 1529 aa41.98■■■■■ 4.31
HMGB1-205ENST00000399494 POGKQ9P215 609 aa41.94■■■■■ 4.3
HMGB1-205ENST00000399494 TNKS1BP1Q9C0C2 1729 aaKnown RBP41.93■■■■■ 4.3
HMGB1-205ENST00000399494 TNS3Q68CZ2 1445 aa41.93■■■■■ 4.3
HMGB1-205ENST00000399494 CABLES1Q8TDN4 633 aa41.92■■■■■ 4.3
HMGB1-205ENST00000399494 DLC1Q96QB1 1528 aa41.91■■■■■ 4.3
HMGB1-205ENST00000399494 SBNO1A3KN83 1393 aa41.9■■■■■ 4.3
HMGB1-205ENST00000399494 USP32Q8NFA0 1604 aa41.89■■■■■ 4.3
HMGB1-205ENST00000399494 CCDC125Q86Z20 511 aa41.89■■■■■ 4.3
HMGB1-205ENST00000399494 RALGAPBQ86X10 1494 aa41.88■■■■■ 4.29
HMGB1-205ENST00000399494 HAP1P54257 671 aaPredicted RBP41.87■■■■■ 4.29
HMGB1-205ENST00000399494 GLI3P10071 1580 aa41.86■■■■■ 4.29
HMGB1-205ENST00000399494 PMFBP1Q8TBY8 1022 aa41.86■■■■■ 4.29
HMGB1-205ENST00000399494 ADGRB1O14514 1584 aa41.85■■■■■ 4.29
HMGB1-205ENST00000399494 EP400Q96L91 3159 aa41.85■■■■■ 4.29
HMGB1-205ENST00000399494 TRAK1Q9UPV9 953 aa41.85■■■■■ 4.29
HMGB1-205ENST00000399494 LMOD2Q6P5Q4 547 aa41.84■■■■■ 4.29
HMGB1-205ENST00000399494 ANKARQ7Z5J8 1434 aa41.84■■■■■ 4.29
HMGB1-205ENST00000399494 PLEKHG5O94827 1062 aa41.83■■■■■ 4.29
HMGB1-205ENST00000399494 KDM2AQ9Y2K7 1162 aa41.83■■■■■ 4.29
HMGB1-205ENST00000399494 ARHGEF10O15013 1369 aa41.81■■■■■ 4.28
HMGB1-205ENST00000399494 DCAF11Q8TEB1 546 aa41.81■■■■■ 4.28
HMGB1-205ENST00000399494 VPS72Q15906 364 aa41.8■■■■■ 4.28
HMGB1-205ENST00000399494 HIRIP3Q9BW71 556 aaPredicted RBP41.79■■■■■ 4.28
HMGB1-205ENST00000399494 ADGRB2O60241 1585 aa41.79■■■■■ 4.28
HMGB1-205ENST00000399494 ZRANB1Q9UGI0 708 aa41.76■■■■■ 4.28
HMGB1-205ENST00000399494 MINK1Q8N4C8 1332 aaPredicted RBP41.75■■■■■ 4.27
HMGB1-205ENST00000399494 STAC3Q96MF2 364 aa41.75■■■■■ 4.27
HMGB1-205ENST00000399494 FAM83GA6ND36 823 aa41.74■■■■■ 4.27
HMGB1-205ENST00000399494 ONECUT3O60422 494 aaPredicted RBP41.73■■■■■ 4.27
HMGB1-205ENST00000399494 SEPT12Q8IYM1 358 aa41.73■■■■■ 4.27
HMGB1-205ENST00000399494 PRR36Q9H6K5 1346 aa41.72■■■■■ 4.27
HMGB1-205ENST00000399494 HRCP23327 699 aa41.71■■■■■ 4.27
HMGB1-205ENST00000399494 ABCA3Q99758 1704 aa41.7■■■■■ 4.27
HMGB1-205ENST00000399494 WASLO00401 505 aaPredicted RBP41.7■■■■■ 4.27
HMGB1-205ENST00000399494 NWD2Q9ULI1 1742 aa41.69■■■■■ 4.27
HMGB1-205ENST00000399494 PLCH1Q4KWH8 1693 aa41.69■■■■■ 4.26
HMGB1-205ENST00000399494 BRWD3Q6RI45 1802 aa41.67■■■■■ 4.26
HMGB1-205ENST00000399494 CCDC9Q9Y3X0 531 aaKnown RBP41.67■■■■■ 4.26
HMGB1-205ENST00000399494 EIF3AQ14152 1382 aaKnown RBP41.66■■■■■ 4.26
HMGB1-205ENST00000399494 GPRASP1Q5JY77 1395 aa41.66■■■■■ 4.26
HMGB1-205ENST00000399494 SRCAPQ6ZRS2 3230 aa41.66■■■■■ 4.26
HMGB1-205ENST00000399494 BLMP54132 1417 aaPredicted RBP41.66■■■■■ 4.26
HMGB1-205ENST00000399494 TRPM3Q9HCF6 1732 aaPredicted RBP41.66■■■■■ 4.26
HMGB1-205ENST00000399494 TULP4Q9NRJ4 1543 aa41.64■■■■■ 4.26
HMGB1-205ENST00000399494 ALS2Q96Q42 1657 aa41.59■■■■■ 4.25
HMGB1-205ENST00000399494 KRT27Q7Z3Y8 459 aa41.58■■■■■ 4.25
HMGB1-205ENST00000399494 NGDNQ8NEJ9 315 aaKnown RBP41.58■■■■■ 4.25
HMGB1-205ENST00000399494 BTG4Q9NY30 223 aa41.58■■■■■ 4.25
HMGB1-205ENST00000399494 DEFB132Q7Z7B7 95 aa41.55■■■■■ 4.24
HMGB1-205ENST00000399494 PAK3O75914 559 aaPredicted RBP41.51■■■■■ 4.24
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms