RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.97■■■□□ 2.399e-13■■■■■ 192.3
HMGB1-205ENST00000399494 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP31.47■■■□□ 2.632e-22■■■■■ 76.2
HMGB1-205ENST00000399494 ZNF622Q969S3 477 aaKnown RBP eCLIP38.06■■■■□ 3.688e-11■■■■■ 55.4
HMGB1-205ENST00000399494 U2AF2P26368 475 aaKnown RBP eCLIP31.55■■■□□ 2.641e-7■■■■■ 37.5
HMGB1-205ENST00000399494 AGGF1Q8N302 714 aaeCLIP27.4■■□□□ 1.983e-7■■■■■ 27.2
HMGB1-205ENST00000399494 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP29.12■■■□□ 2.253e-7■■■■□ 26.4
HMGB1-205ENST00000399494 AQRO60306 1485 aaKnown RBP eCLIP52.21■■■■■ 5.952e-9■■■■□ 24.4
HMGB1-205ENST00000399494 U2AF1Q01081 240 aaKnown RBP eCLIP38.01■■■■□ 3.683e-11■■■■□ 22.7
HMGB1-205ENST00000399494 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP24.7■■□□□ 1.551e-6■■■■□ 22.6
HMGB1-205ENST00000399494 TIAL1Q01085 375 aaKnown RBP eCLIP27.07■■□□□ 1.923e-6■■■■□ 21.9
HMGB1-205ENST00000399494 TRA2AQ13595 282 aaKnown RBP eCLIP28.33■■■□□ 2.133e-6■■■■□ 20.9
HMGB1-205ENST00000399494 SRSF7Q16629 238 aaKnown RBP eCLIP22.37■■□□□ 1.171e-10■■■■□ 20
HMGB1-205ENST00000399494 SF3B4Q15427 424 aaKnown RBP eCLIP25.99■■□□□ 1.751e-8■■■□□ 19.1
HMGB1-205ENST00000399494 PUM1Q14671 1186 aaKnown RBP eCLIP30.98■■■□□ 2.551e-7■■■□□ 17.8
HMGB1-205ENST00000399494 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP44.94■■■■■ 4.788e-9■■■□□ 17.4
HMGB1-205ENST00000399494 SUB1P53999 127 aaKnown RBP eCLIP21.41■■□□□ 1.025e-8■■■□□ 15
HMGB1-205ENST00000399494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP44.51■■■■■ 4.722e-7■■□□□ 14.5
HMGB1-205ENST00000399494 EFTUD2Q15029 972 aaKnown RBP eCLIP26.98■■□□□ 1.915e-16■■□□□ 13.9
HMGB1-205ENST00000399494 SF3B1O75533 1304 aaKnown RBP eCLIP31.43■■■□□ 2.624e-8■■□□□ 13.3
HMGB1-205ENST00000399494 DDX3XO00571 662 aaKnown RBP eCLIP29■■■□□ 2.239e-10■■□□□ 13.2
HMGB1-205ENST00000399494 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP39.33■■■■□ 3.896e-7■■□□□ 13.1
HMGB1-205ENST00000399494 SRSF1Q07955 248 aaKnown RBP eCLIP28.11■■■□□ 2.096e-14■■□□□ 12.8
HMGB1-205ENST00000399494 YBX3P16989 372 aaKnown RBP eCLIP39.31■■■■□ 3.886e-17■■□□□ 12.5
HMGB1-205ENST00000399494 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP23.76■■□□□ 1.397e-7■■□□□ 12.2
HMGB1-205ENST00000399494 RPS3P23396 243 aaKnown RBP eCLIP27.36■■□□□ 1.979e-18■■□□□ 12.1
HMGB1-205ENST00000399494 CPSF6Q16630 551 aaKnown RBP eCLIP26.47■■□□□ 1.833e-18■■□□□ 11.5
HMGB1-205ENST00000399494 XRN2Q9H0D6 950 aaKnown RBP eCLIP34.8■■■■□ 3.168e-6■□□□□ 10.8
HMGB1-205ENST00000399494 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP31.52■■■□□ 2.642e-6■□□□□ 10.8
HMGB1-205ENST00000399494 HNRNPCP07910 306 aaKnown RBP eCLIP20.97■□□□□ 0.954e-6■□□□□ 10.4
HMGB1-205ENST00000399494 BUD13Q9BRD0 619 aaKnown RBP eCLIP33.71■■■□□ 2.996e-8■□□□□ 10.3
HMGB1-205ENST00000399494 MTPAPQ9NVV4 582 aaKnown RBP eCLIP29.97■■■□□ 2.394e-6■□□□□ 9.4
HMGB1-205ENST00000399494 NKRFO15226 690 aaKnown RBP eCLIP33.37■■■□□ 2.931e-9■□□□□ 9.2
HMGB1-205ENST00000399494 HNRNPLP14866 589 aaKnown RBP eCLIP30.24■■■□□ 2.432e-8■□□□□ 9.1
HMGB1-205ENST00000399494 KHSRPQ92945 711 aaKnown RBP eCLIP32.75■■■□□ 2.832e-8■□□□□ 8.9
HMGB1-205ENST00000399494 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP27.81■■■□□ 2.048e-6■□□□□ 8.4
Retrieved 35 of 35 RNA–protein pairs in 10.1 ms