RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 EVC2Q86UK5 1308 aa29.33■■■□□ 2.29
CPNE1-204ENST00000397443 CHD2O14647 1828 aaKnown RBP29.33■■■□□ 2.29
CPNE1-204ENST00000397443 XRN1Q8IZH2 1706 aaKnown RBP29.32■■■□□ 2.28
CPNE1-204ENST00000397443 TULP4Q9NRJ4 1543 aa29.32■■■□□ 2.28
CPNE1-204ENST00000397443 SIRT1Q96EB6 747 aa29.32■■■□□ 2.28
CPNE1-204ENST00000397443 CABP2Q9NPB3 220 aa29.3■■■□□ 2.28
CPNE1-204ENST00000397443 SRPK2P78362 688 aaKnown RBP29.3■■■□□ 2.28
CPNE1-204ENST00000397443 RBM33Q96EV2 1170 aaKnown RBP29.29■■■□□ 2.28
CPNE1-204ENST00000397443 PTCH1Q13635 1447 aa29.29■■■□□ 2.28
CPNE1-204ENST00000397443 CDK19Q9BWU1 502 aa29.26■■■□□ 2.27
CPNE1-204ENST00000397443 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.24■■■□□ 2.27
CPNE1-204ENST00000397443 TMC1Q8TDI8 760 aa29.24■■■□□ 2.27
CPNE1-204ENST00000397443 CNGB1Q14028 1251 aaPredicted RBP29.21■■■□□ 2.27
CPNE1-204ENST00000397443 WASLO00401 505 aaPredicted RBP29.2■■■□□ 2.27
CPNE1-204ENST00000397443 PANK3Q9H999 370 aa29.2■■■□□ 2.26
CPNE1-204ENST00000397443 MYOM1P52179 1685 aa29.19■■■□□ 2.26
CPNE1-204ENST00000397443 MIER1Q8N108 512 aa29.18■■■□□ 2.26
CPNE1-204ENST00000397443 NUTM2FA1L443 756 aa29.18■■■□□ 2.26
CPNE1-204ENST00000397443 SLC12A5Q9H2X9 1139 aa29.17■■■□□ 2.26
CPNE1-204ENST00000397443 NWD1Q149M9 1564 aa29.17■■■□□ 2.26
CPNE1-204ENST00000397443 PROSER2Q86WR7 435 aaPredicted RBP29.16■■■□□ 2.26
CPNE1-204ENST00000397443 C14orf37Q86TY3 774 aa29.16■■■□□ 2.26
CPNE1-204ENST00000397443 AEBP2Q6ZN18 517 aaPredicted RBP29.14■■■□□ 2.26
CPNE1-204ENST00000397443 STRCP1A6NGW2 1772 aa29.14■■■□□ 2.26
CPNE1-204ENST00000397443 PUS7Q96PZ0 661 aaKnown RBP29.12■■■□□ 2.25
CPNE1-204ENST00000397443 ATAD2Q6PL18 1390 aa29.12■■■□□ 2.25
CPNE1-204ENST00000397443 ADGRB2O60241 1585 aa29.11■■■□□ 2.25
CPNE1-204ENST00000397443 ZNF335Q9H4Z2 1342 aaPredicted RBP29.11■■■□□ 2.25
CPNE1-204ENST00000397443 ANP32CO43423 234 aa29.1■■■□□ 2.25
CPNE1-204ENST00000397443 DMRT2Q9Y5R5 561 aa29.1■■■□□ 2.25
CPNE1-204ENST00000397443 NKTRP30414 1462 aaKnown RBP29.09■■■□□ 2.25
CPNE1-204ENST00000397443 NUDT16Q96DE0 195 aaKnown RBP29.09■■■□□ 2.25
CPNE1-204ENST00000397443 NALCNQ8IZF0 1738 aa29.09■■■□□ 2.25
CPNE1-204ENST00000397443 CABP1Q9NZU7 370 aa29.08■■■□□ 2.25
CPNE1-204ENST00000397443 PRR36Q9H6K5 1346 aa29.06■■■□□ 2.24
CPNE1-204ENST00000397443 TMEM94Q12767 1356 aa29.04■■■□□ 2.24
CPNE1-204ENST00000397443 PER1O15534 1290 aaPredicted RBP29.04■■■□□ 2.24
CPNE1-204ENST00000397443 ADGRL3Q9HAR2 1447 aa29.04■■■□□ 2.24
CPNE1-204ENST00000397443 KNSTRNQ9Y448 316 aa29.04■■■□□ 2.24
CPNE1-204ENST00000397443 ATP7BP35670 1465 aa29.03■■■□□ 2.24
CPNE1-204ENST00000397443 CARD14Q9BXL6 1004 aa29.02■■■□□ 2.24
CPNE1-204ENST00000397443 PPIP5K1Q6PFW1 1433 aa29.02■■■□□ 2.24
CPNE1-204ENST00000397443 CCDC61Q9Y6R9 512 aa29.02■■■□□ 2.24
CPNE1-204ENST00000397443 NINLQ9Y2I6 1382 aa29■■■□□ 2.23
CPNE1-204ENST00000397443 CC2D1BQ5T0F9 858 aaKnown RBP28.99■■■□□ 2.23
CPNE1-204ENST00000397443 A0A1W2PP64 1363 aa28.98■■■□□ 2.23
CPNE1-204ENST00000397443 ANKRD36BQ8N2N9 1353 aa28.98■■■□□ 2.23
CPNE1-204ENST00000397443 TERF2IPQ9NYB0 399 aa28.98■■■□□ 2.23
CPNE1-204ENST00000397443 CDC42BPGQ6DT37 1551 aa28.97■■■□□ 2.23
CPNE1-204ENST00000397443 NSD3Q9BZ95 1437 aa28.97■■■□□ 2.23
CPNE1-204ENST00000397443 USP32Q8NFA0 1604 aa28.97■■■□□ 2.23
CPNE1-204ENST00000397443 RGPD8O14715 1765 aaPredicted RBP28.96■■■□□ 2.23
CPNE1-204ENST00000397443 PRKRIP1Q9H875 184 aaPredicted RBP28.96■■■□□ 2.23
CPNE1-204ENST00000397443 HDGFL2Q7Z4V5 671 aaPredicted RBP28.96■■■□□ 2.23
CPNE1-204ENST00000397443 FMN2Q9NZ56 1722 aa28.96■■■□□ 2.23
CPNE1-204ENST00000397443 CD163L1Q9NR16 1453 aa28.95■■■□□ 2.22
CPNE1-204ENST00000397443 PMFBP1Q8TBY8 1022 aa28.94■■■□□ 2.22
CPNE1-204ENST00000397443 C19orf44Q9H6X5 657 aa28.94■■■□□ 2.22
CPNE1-204ENST00000397443 LRRC7Q96NW7 1537 aa28.92■■■□□ 2.22
CPNE1-204ENST00000397443 TOPAZ1Q8N9V7 1692 aa28.91■■■□□ 2.22
CPNE1-204ENST00000397443 KTN1Q86UP2 1357 aaKnown RBP28.91■■■□□ 2.22
CPNE1-204ENST00000397443 AMER1Q5JTC6 1135 aaPredicted RBP28.9■■■□□ 2.22
CPNE1-204ENST00000397443 ANKARQ7Z5J8 1434 aa28.9■■■□□ 2.22
CPNE1-204ENST00000397443 XIRP1Q702N8 1843 aaKnown RBP28.89■■■□□ 2.22
CPNE1-204ENST00000397443 ATF3P18847 181 aa28.89■■■□□ 2.22
CPNE1-204ENST00000397443 ACEP12821 1306 aa28.88■■■□□ 2.21
CPNE1-204ENST00000397443 ITSN1Q15811 1721 aa28.87■■■□□ 2.21
CPNE1-204ENST00000397443 MSH6P52701 1360 aa28.87■■■□□ 2.21
CPNE1-204ENST00000397443 NCOA3Q9Y6Q9 1424 aa28.87■■■□□ 2.21
CPNE1-204ENST00000397443 ESCO1Q5FWF5 840 aa28.86■■■□□ 2.21
CPNE1-204ENST00000397443 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.86■■■□□ 2.21
CPNE1-204ENST00000397443 PLEKHG3A1L390 1219 aa28.86■■■□□ 2.21
CPNE1-204ENST00000397443 NGDNQ8NEJ9 315 aaKnown RBP28.86■■■□□ 2.21
CPNE1-204ENST00000397443 CPSF1Q10570 1443 aaKnown RBP28.85■■■□□ 2.21
CPNE1-204ENST00000397443 CGNL1Q0VF96 1302 aa28.85■■■□□ 2.21
CPNE1-204ENST00000397443 ORAI2Q96SN7 254 aa28.82■■■□□ 2.2
CPNE1-204ENST00000397443 RALBP1Q15311 655 aa28.81■■■□□ 2.2
CPNE1-204ENST00000397443 PHF8Q9UPP1 1060 aa28.81■■■□□ 2.2
CPNE1-204ENST00000397443 PARD3Q8TEW0 1356 aa28.8■■■□□ 2.2
CPNE1-204ENST00000397443 AKAP12Q02952 1782 aa28.8■■■□□ 2.2
CPNE1-204ENST00000397443 CADPS2Q86UW7 1296 aa28.8■■■□□ 2.2
CPNE1-204ENST00000397443 ZNF692Q9BU19 519 aaPredicted RBP28.8■■■□□ 2.2
CPNE1-204ENST00000397443 DCCP43146 1447 aa28.79■■■□□ 2.2
CPNE1-204ENST00000397443 GGNBP2Q9H3C7 697 aa28.79■■■□□ 2.2
CPNE1-204ENST00000397443 C1orf167Q5SNV9 1468 aa28.78■■■□□ 2.2
CPNE1-204ENST00000397443 MON2Q7Z3U7 1717 aa28.77■■■□□ 2.2
CPNE1-204ENST00000397443 NPC1L1Q9UHC9 1359 aa28.77■■■□□ 2.2
CPNE1-204ENST00000397443 MST1RQ04912 1400 aa28.77■■■□□ 2.2
CPNE1-204ENST00000397443 EDC4Q6P2E9 1401 aaKnown RBP28.77■■■□□ 2.2
CPNE1-204ENST00000397443 TNNT2P45379 298 aaPredicted RBP28.77■■■□□ 2.2
CPNE1-204ENST00000397443 CCDC184Q52MB2 194 aa28.76■■■□□ 2.19
CPNE1-204ENST00000397443 POLR3AO14802 1390 aaPredicted RBP28.76■■■□□ 2.19
CPNE1-204ENST00000397443 CCER2I3L3R5 266 aa28.75■■■□□ 2.19
CPNE1-204ENST00000397443 FYB1O15117 783 aa28.75■■■□□ 2.19
CPNE1-204ENST00000397443 MORC1Q86VD1 984 aa28.75■■■□□ 2.19
CPNE1-204ENST00000397443 USP6P35125 1406 aa28.75■■■□□ 2.19
CPNE1-204ENST00000397443 MYBBP1AQ9BQG0 1328 aaKnown RBP28.74■■■□□ 2.19
CPNE1-204ENST00000397443 LTBP4Q8N2S1 1624 aa28.73■■■□□ 2.19
CPNE1-204ENST00000397443 NME9Q86XW9 330 aa28.73■■■□□ 2.19
CPNE1-204ENST00000397443 FOXO3O43524 673 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms