RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 NINLQ9Y2I6 1382 aa22.19■■□□□ 1.14
NUP50-202ENST00000396096 NSD2O96028 1365 aa22.18■■□□□ 1.14
NUP50-202ENST00000396096 FANCIQ9NVI1 1328 aa22.18■■□□□ 1.14
NUP50-202ENST00000396096 FBXO31Q5XUX0 539 aaPredicted RBP22.17■■□□□ 1.14
NUP50-202ENST00000396096 ALKQ9UM73 1620 aa22.17■■□□□ 1.14
NUP50-202ENST00000396096 GOLGA2Q08379 1002 aa22.17■■□□□ 1.14
NUP50-202ENST00000396096 DUSP27Q5VZP5 1158 aa22.17■■□□□ 1.14
NUP50-202ENST00000396096 EXOC6Q8TAG9 804 aa22.16■■□□□ 1.14
NUP50-202ENST00000396096 CGNL1Q0VF96 1302 aa22.16■■□□□ 1.14
NUP50-202ENST00000396096 MORC1Q86VD1 984 aa22.15■■□□□ 1.14
NUP50-202ENST00000396096 YTHDC2Q9H6S0 1430 aaKnown RBP22.15■■□□□ 1.14
NUP50-202ENST00000396096 TRMT2AQ8IZ69 625 aaKnown RBP22.15■■□□□ 1.14
NUP50-202ENST00000396096 SLFN5Q08AF3 891 aa22.13■■□□□ 1.13
NUP50-202ENST00000396096 A2ML1A8K2U0 1454 aa22.12■■□□□ 1.13
NUP50-202ENST00000396096 MYT1Q01538 1121 aa22.11■■□□□ 1.13
NUP50-202ENST00000396096 CCDC146Q8IYE0 955 aa22.11■■□□□ 1.13
NUP50-202ENST00000396096 SETD1AO15047 1707 aaKnown RBP22.1■■□□□ 1.13
NUP50-202ENST00000396096 DLC1Q96QB1 1528 aa22.1■■□□□ 1.13
NUP50-202ENST00000396096 APAF1O14727 1248 aa22.1■■□□□ 1.13
NUP50-202ENST00000396096 ATAD2Q6PL18 1390 aa22.09■■□□□ 1.13
NUP50-202ENST00000396096 CABP2Q9NPB3 220 aa22.09■■□□□ 1.13
NUP50-202ENST00000396096 ABCC11Q96J66 1382 aa22.08■■□□□ 1.13
NUP50-202ENST00000396096 ANKRD26Q9UPS8 1709 aa22.08■■□□□ 1.13
NUP50-202ENST00000396096 STK26Q9P289 416 aa22.07■■□□□ 1.12
NUP50-202ENST00000396096 NKTRP30414 1462 aaKnown RBP22.06■■□□□ 1.12
NUP50-202ENST00000396096 IQSEC2Q5JU85 1478 aa22.06■■□□□ 1.12
NUP50-202ENST00000396096 A0A1W2PP64 1363 aa22.06■■□□□ 1.12
NUP50-202ENST00000396096 RIMS2Q9UQ26 1411 aa22.06■■□□□ 1.12
NUP50-202ENST00000396096 MED14O60244 1454 aa22.05■■□□□ 1.12
NUP50-202ENST00000396096 STAG3Q9UJ98 1225 aa22.05■■□□□ 1.12
NUP50-202ENST00000396096 E9PSI1 815 aa22.05■■□□□ 1.12
NUP50-202ENST00000396096 PLIN1O60240 522 aa22.05■■□□□ 1.12
NUP50-202ENST00000396096 PRAM1Q96QH2 718 aa22.05■■□□□ 1.12
NUP50-202ENST00000396096 CD163L1Q9NR16 1453 aa22.04■■□□□ 1.12
NUP50-202ENST00000396096 SAFB2Q14151 953 aaKnown RBP eCLIP22.03■■□□□ 1.12
NUP50-202ENST00000396096 CFAP53Q96M91 514 aa22.03■■□□□ 1.12
NUP50-202ENST00000396096 CRBNQ96SW2 442 aa22.03■■□□□ 1.12
NUP50-202ENST00000396096 MTHFSP49914 203 aa22.02■■□□□ 1.12
NUP50-202ENST00000396096 SRPK2P78362 688 aaKnown RBP22.02■■□□□ 1.12
NUP50-202ENST00000396096 NCBP3Q53F19 620 aaKnown RBP22.02■■□□□ 1.12
NUP50-202ENST00000396096 RUNDC1Q96C34 613 aa22.02■■□□□ 1.12
NUP50-202ENST00000396096 POGKQ9P215 609 aa22.02■■□□□ 1.12
NUP50-202ENST00000396096 NRXN3Q9Y4C0 1643 aa22.01■■□□□ 1.11
NUP50-202ENST00000396096 GOLGA6L2Q8N9W4 650 aaPredicted RBP22■■□□□ 1.11
NUP50-202ENST00000396096 ANP32EQ9BTT0 268 aa22■■□□□ 1.11
NUP50-202ENST00000396096 SPINK5Q9NQ38 1064 aaPredicted RBP22■■□□□ 1.11
NUP50-202ENST00000396096 MINK1Q8N4C8 1332 aaPredicted RBP22■■□□□ 1.11
NUP50-202ENST00000396096 TNNT2P45379 298 aaPredicted RBP21.99■■□□□ 1.11
NUP50-202ENST00000396096 TERF2IPQ9NYB0 399 aa21.99■■□□□ 1.11
NUP50-202ENST00000396096 NLRP1Q9C000 1473 aa21.99■■□□□ 1.11
NUP50-202ENST00000396096 PHF23Q9BUL5 403 aaPredicted RBP21.98■■□□□ 1.11
NUP50-202ENST00000396096 WWC1Q8IX03 1113 aa21.98■■□□□ 1.11
NUP50-202ENST00000396096 MSH5O43196 834 aa21.97■■□□□ 1.11
NUP50-202ENST00000396096 ZMYM3Q14202 1370 aa21.97■■□□□ 1.11
NUP50-202ENST00000396096 KIF20BQ96Q89 1820 aa21.97■■□□□ 1.11
NUP50-202ENST00000396096 ADGRB2O60241 1585 aa21.96■■□□□ 1.11
NUP50-202ENST00000396096 TCERG1O14776 1098 aaKnown RBP21.96■■□□□ 1.11
NUP50-202ENST00000396096 C20orf194Q5TEA3 1177 aa21.96■■□□□ 1.11
NUP50-202ENST00000396096 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.96■■□□□ 1.11
NUP50-202ENST00000396096 KNDC1Q76NI1 1749 aa21.95■■□□□ 1.11
NUP50-202ENST00000396096 MLECQ14165 292 aa21.95■■□□□ 1.1
NUP50-202ENST00000396096 CCDC27Q2M243 656 aa21.95■■□□□ 1.1
NUP50-202ENST00000396096 CDK19Q9BWU1 502 aa21.95■■□□□ 1.1
NUP50-202ENST00000396096 COL3A1P02461 1466 aaPredicted RBP21.95■■□□□ 1.1
NUP50-202ENST00000396096 DMRT2Q9Y5R5 561 aa21.94■■□□□ 1.1
NUP50-202ENST00000396096 ATP7BP35670 1465 aa21.93■■□□□ 1.1
NUP50-202ENST00000396096 SENP3Q9H4L4 574 aaPredicted RBP21.93■■□□□ 1.1
NUP50-202ENST00000396096 WDR63Q8IWG1 891 aa21.92■■□□□ 1.1
NUP50-202ENST00000396096 TCP11L2Q8N4U5 519 aa21.92■■□□□ 1.1
NUP50-202ENST00000396096 FYB1O15117 783 aa21.92■■□□□ 1.1
NUP50-202ENST00000396096 HDGFL2Q7Z4V5 671 aaPredicted RBP21.92■■□□□ 1.1
NUP50-202ENST00000396096 DNAJC5Q9H3Z4 198 aa21.91■■□□□ 1.1
NUP50-202ENST00000396096 MS4A1P11836 297 aa21.9■■□□□ 1.1
NUP50-202ENST00000396096 ESF1Q9H501 851 aaKnown RBP21.9■■□□□ 1.1
NUP50-202ENST00000396096 UBR1Q8IWV7 1749 aa21.89■■□□□ 1.1
NUP50-202ENST00000396096 TNRQ92752 1358 aa21.89■■□□□ 1.1
NUP50-202ENST00000396096 TECPR2O15040 1411 aa21.89■■□□□ 1.09
NUP50-202ENST00000396096 KDM2BQ8NHM5 1336 aa21.89■■□□□ 1.09
NUP50-202ENST00000396096 SIRT1Q96EB6 747 aa21.88■■□□□ 1.09
NUP50-202ENST00000396096 GGNBP2Q9H3C7 697 aa21.88■■□□□ 1.09
NUP50-202ENST00000396096 FAM135BQ49AJ0 1406 aa21.87■■□□□ 1.09
NUP50-202ENST00000396096 CPS1P31327 1500 aa21.87■■□□□ 1.09
NUP50-202ENST00000396096 HDGFP51858 240 aaKnown RBP21.87■■□□□ 1.09
NUP50-202ENST00000396096 CABP1Q9NZU7 370 aa21.86■■□□□ 1.09
NUP50-202ENST00000396096 PNPLA6Q8IY17 1366 aa21.86■■□□□ 1.09
NUP50-202ENST00000396096 METP08581 1390 aa21.85■■□□□ 1.09
NUP50-202ENST00000396096 U2AF1L5P0DN76 240 aaPredicted RBP21.85■■□□□ 1.09
NUP50-202ENST00000396096 U2AF1Q01081 240 aaKnown RBP eCLIP21.85■■□□□ 1.09
NUP50-202ENST00000396096 CDC42BPGQ6DT37 1551 aa21.85■■□□□ 1.09
NUP50-202ENST00000396096 WAPLQ7Z5K2 1190 aa21.85■■□□□ 1.09
NUP50-202ENST00000396096 BCAR3O75815 825 aa21.84■■□□□ 1.09
NUP50-202ENST00000396096 CENPQQ7L2Z9 268 aaPredicted RBP21.84■■□□□ 1.09
NUP50-202ENST00000396096 PDE3AQ14432 1141 aa21.83■■□□□ 1.09
NUP50-202ENST00000396096 RRP7AQ9Y3A4 280 aaKnown RBP21.83■■□□□ 1.09
NUP50-202ENST00000396096 CPSF1Q10570 1443 aaKnown RBP21.82■■□□□ 1.08
NUP50-202ENST00000396096 TMEM2Q9UHN6 1383 aa21.82■■□□□ 1.08
NUP50-202ENST00000396096 PLEKHF1Q96S99 279 aa21.82■■□□□ 1.08
NUP50-202ENST00000396096 WASLO00401 505 aaPredicted RBP21.81■■□□□ 1.08
NUP50-202ENST00000396096 NEUROD2Q15784 382 aa21.81■■□□□ 1.08
NUP50-202ENST00000396096 EDC4Q6P2E9 1401 aaKnown RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms