RNA–Protein interactions for RNA: ENST00000395860.6

VCPKMT-202, Transcript of valosin containing protein lysine methyltransferase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCPKMT, Length 1,761 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-202ENST00000395860 XRN1Q8IZH2 1706 aaKnown RBP28.19■■■□□ 2.1
VCPKMT-202ENST00000395860 CHD2O14647 1828 aaKnown RBP28.18■■■□□ 2.1
VCPKMT-202ENST00000395860 AMOTL2Q9Y2J4 779 aa28.18■■■□□ 2.1
VCPKMT-202ENST00000395860 HSPA2P54652 639 aa28.16■■■□□ 2.1
VCPKMT-202ENST00000395860 ROBO2Q9HCK4 1378 aa28.16■■■□□ 2.1
VCPKMT-202ENST00000395860 ANP32CO43423 234 aa28.14■■■□□ 2.09
VCPKMT-202ENST00000395860 PTCH1Q13635 1447 aa28.12■■■□□ 2.09
VCPKMT-202ENST00000395860 PUS7Q96PZ0 661 aaKnown RBP28.11■■■□□ 2.09
VCPKMT-202ENST00000395860 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.08■■■□□ 2.09
VCPKMT-202ENST00000395860 SRPK2P78362 688 aaKnown RBP28.08■■■□□ 2.09
VCPKMT-202ENST00000395860 PANK3Q9H999 370 aa28.08■■■□□ 2.09
VCPKMT-202ENST00000395860 CABP2Q9NPB3 220 aa28.07■■■□□ 2.08
VCPKMT-202ENST00000395860 KCNA6P17658 529 aa28.06■■■□□ 2.08
VCPKMT-202ENST00000395860 STRCQ7RTU9 1775 aa28.06■■■□□ 2.08
VCPKMT-202ENST00000395860 CDK19Q9BWU1 502 aa28.06■■■□□ 2.08
VCPKMT-202ENST00000395860 ADGRB2O60241 1585 aa28.05■■■□□ 2.08
VCPKMT-202ENST00000395860 ATAD2Q6PL18 1390 aa28.03■■■□□ 2.08
VCPKMT-202ENST00000395860 NWD1Q149M9 1564 aa28.02■■■□□ 2.08
VCPKMT-202ENST00000395860 TMC1Q8TDI8 760 aa28.02■■■□□ 2.08
VCPKMT-202ENST00000395860 WASLO00401 505 aaPredicted RBP28.01■■■□□ 2.08
VCPKMT-202ENST00000395860 PER1O15534 1290 aaPredicted RBP27.99■■■□□ 2.07
VCPKMT-202ENST00000395860 SLC12A5Q9H2X9 1139 aa27.98■■■□□ 2.07
VCPKMT-202ENST00000395860 NINLQ9Y2I6 1382 aa27.97■■■□□ 2.07
VCPKMT-202ENST00000395860 PRKRIP1Q9H875 184 aaPredicted RBP27.96■■■□□ 2.07
VCPKMT-202ENST00000395860 CNGB1Q14028 1251 aaPredicted RBP27.94■■■□□ 2.06
VCPKMT-202ENST00000395860 KNSTRNQ9Y448 316 aa27.94■■■□□ 2.06
VCPKMT-202ENST00000395860 NALCNQ8IZF0 1738 aa27.93■■■□□ 2.06
VCPKMT-202ENST00000395860 NKTRP30414 1462 aaKnown RBP27.91■■■□□ 2.06
VCPKMT-202ENST00000395860 ANKRD36BQ8N2N9 1353 aa27.91■■■□□ 2.06
VCPKMT-202ENST00000395860 STRCP1A6NGW2 1772 aa27.9■■■□□ 2.06
VCPKMT-202ENST00000395860 KTN1Q86UP2 1357 aaKnown RBP27.89■■■□□ 2.06
VCPKMT-202ENST00000395860 NUDT16Q96DE0 195 aaKnown RBP27.88■■■□□ 2.05
VCPKMT-202ENST00000395860 ATP7BP35670 1465 aa27.88■■■□□ 2.05
VCPKMT-202ENST00000395860 CCER2I3L3R5 266 aa27.88■■■□□ 2.05
VCPKMT-202ENST00000395860 CARD14Q9BXL6 1004 aa27.87■■■□□ 2.05
VCPKMT-202ENST00000395860 CABP1Q9NZU7 370 aa27.87■■■□□ 2.05
VCPKMT-202ENST00000395860 TOPAZ1Q8N9V7 1692 aa27.86■■■□□ 2.05
VCPKMT-202ENST00000395860 PPIP5K1Q6PFW1 1433 aa27.86■■■□□ 2.05
VCPKMT-202ENST00000395860 FMN2Q9NZ56 1722 aa27.86■■■□□ 2.05
VCPKMT-202ENST00000395860 TERF2IPQ9NYB0 399 aa27.86■■■□□ 2.05
VCPKMT-202ENST00000395860 ITSN1Q15811 1721 aa27.85■■■□□ 2.05
VCPKMT-202ENST00000395860 CC2D1BQ5T0F9 858 aaKnown RBP27.85■■■□□ 2.05
VCPKMT-202ENST00000395860 PROSER2Q86WR7 435 aaPredicted RBP27.85■■■□□ 2.05
VCPKMT-202ENST00000395860 RBM33Q96EV2 1170 aaKnown RBP27.85■■■□□ 2.05
VCPKMT-202ENST00000395860 CCDC61Q9Y6R9 512 aa27.85■■■□□ 2.05
VCPKMT-202ENST00000395860 NSD3Q9BZ95 1437 aa27.85■■■□□ 2.05
VCPKMT-202ENST00000395860 CDC42BPGQ6DT37 1551 aa27.85■■■□□ 2.05
VCPKMT-202ENST00000395860 A0A1W2PP64 1363 aa27.84■■■□□ 2.05
VCPKMT-202ENST00000395860 RGPD8O14715 1765 aaPredicted RBP27.84■■■□□ 2.05
VCPKMT-202ENST00000395860 USP32Q8NFA0 1604 aa27.84■■■□□ 2.05
VCPKMT-202ENST00000395860 PRR36Q9H6K5 1346 aa27.84■■■□□ 2.05
VCPKMT-202ENST00000395860 ADGRL3Q9HAR2 1447 aa27.84■■■□□ 2.05
VCPKMT-202ENST00000395860 CD163L1Q9NR16 1453 aa27.84■■■□□ 2.05
VCPKMT-202ENST00000395860 RALBP1Q15311 655 aa27.83■■■□□ 2.05
VCPKMT-202ENST00000395860 AMER1Q5JTC6 1135 aaPredicted RBP27.83■■■□□ 2.05
VCPKMT-202ENST00000395860 HDGFL2Q7Z4V5 671 aaPredicted RBP27.83■■■□□ 2.05
VCPKMT-202ENST00000395860 NUTM2FA1L443 756 aa27.82■■■□□ 2.04
VCPKMT-202ENST00000395860 C14orf37Q86TY3 774 aa27.82■■■□□ 2.04
VCPKMT-202ENST00000395860 PARD3Q8TEW0 1356 aa27.81■■■□□ 2.04
VCPKMT-202ENST00000395860 NPC1L1Q9UHC9 1359 aa27.81■■■□□ 2.04
VCPKMT-202ENST00000395860 AKAP12Q02952 1782 aa27.8■■■□□ 2.04
VCPKMT-202ENST00000395860 DMRT2Q9Y5R5 561 aa27.79■■■□□ 2.04
VCPKMT-202ENST00000395860 ANKARQ7Z5J8 1434 aa27.78■■■□□ 2.04
VCPKMT-202ENST00000395860 MON2Q7Z3U7 1717 aa27.76■■■□□ 2.03
VCPKMT-202ENST00000395860 CGNL1Q0VF96 1302 aa27.75■■■□□ 2.03
VCPKMT-202ENST00000395860 MYBBP1AQ9BQG0 1328 aaKnown RBP27.75■■■□□ 2.03
VCPKMT-202ENST00000395860 CPSF1Q10570 1443 aaKnown RBP27.75■■■□□ 2.03
VCPKMT-202ENST00000395860 TMEM94Q12767 1356 aa27.74■■■□□ 2.03
VCPKMT-202ENST00000395860 NCOA3Q9Y6Q9 1424 aa27.73■■■□□ 2.03
VCPKMT-202ENST00000395860 KIF20BQ96Q89 1820 aa27.72■■■□□ 2.03
VCPKMT-202ENST00000395860 PLEKHG3A1L390 1219 aa27.72■■■□□ 2.03
VCPKMT-202ENST00000395860 ZNF335Q9H4Z2 1342 aaPredicted RBP27.71■■■□□ 2.03
VCPKMT-202ENST00000395860 XIRP1Q702N8 1843 aaKnown RBP27.71■■■□□ 2.03
VCPKMT-202ENST00000395860 NSD2O96028 1365 aa27.7■■■□□ 2.02
VCPKMT-202ENST00000395860 ANKRD26Q9UPS8 1709 aa27.69■■■□□ 2.02
VCPKMT-202ENST00000395860 ZNF692Q9BU19 519 aaPredicted RBP27.69■■■□□ 2.02
VCPKMT-202ENST00000395860 C19orf44Q9H6X5 657 aa27.69■■■□□ 2.02
VCPKMT-202ENST00000395860 MRS2Q9HD23 443 aa27.68■■■□□ 2.02
VCPKMT-202ENST00000395860 ACEP12821 1306 aa27.68■■■□□ 2.02
VCPKMT-202ENST00000395860 CCDC184Q52MB2 194 aa27.68■■■□□ 2.02
VCPKMT-202ENST00000395860 EDC4Q6P2E9 1401 aaKnown RBP27.67■■■□□ 2.02
VCPKMT-202ENST00000395860 PMFBP1Q8TBY8 1022 aa27.65■■■□□ 2.02
VCPKMT-202ENST00000395860 LRRC7Q96NW7 1537 aa27.65■■■□□ 2.02
VCPKMT-202ENST00000395860 NLRP13Q86W25 1043 aa27.65■■■□□ 2.02
VCPKMT-202ENST00000395860 NRKQ7Z2Y5 1582 aa27.64■■■□□ 2.01
VCPKMT-202ENST00000395860 DCCP43146 1447 aa27.64■■■□□ 2.01
VCPKMT-202ENST00000395860 BRD4O60885 1362 aaPredicted RBP27.64■■■□□ 2.01
VCPKMT-202ENST00000395860 MORC1Q86VD1 984 aa27.63■■■□□ 2.01
VCPKMT-202ENST00000395860 NGDNQ8NEJ9 315 aaKnown RBP27.63■■■□□ 2.01
VCPKMT-202ENST00000395860 POLR3AO14802 1390 aaPredicted RBP27.63■■■□□ 2.01
VCPKMT-202ENST00000395860 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.63■■■□□ 2.01
VCPKMT-202ENST00000395860 YTHDC1Q96MU7 727 aaKnown RBP27.62■■■□□ 2.01
VCPKMT-202ENST00000395860 FYB1O15117 783 aa27.61■■■□□ 2.01
VCPKMT-202ENST00000395860 ATF3P18847 181 aa27.61■■■□□ 2.01
VCPKMT-202ENST00000395860 PPP2R1AP30153 589 aa27.61■■■□□ 2.01
VCPKMT-202ENST00000395860 USP6P35125 1406 aa27.61■■■□□ 2.01
VCPKMT-202ENST00000395860 MSH6P52701 1360 aa27.61■■■□□ 2.01
VCPKMT-202ENST00000395860 GGNBP2Q9H3C7 697 aa27.6■■■□□ 2.01
VCPKMT-202ENST00000395860 PHF8Q9UPP1 1060 aa27.6■■■□□ 2.01
VCPKMT-202ENST00000395860 ESCO1Q5FWF5 840 aa27.58■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms