RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 MYO3AQ8NEV4 1616 aa26.67■■□□□ 1.86
CLK3-202ENST00000395066 TCP11L2Q8N4U5 519 aa26.66■■□□□ 1.86
CLK3-202ENST00000395066 C14orf93Q9H972 538 aaKnown RBP26.66■■□□□ 1.86
CLK3-202ENST00000395066 SBNO2Q9Y2G9 1366 aa26.65■■□□□ 1.86
CLK3-202ENST00000395066 SHPRHQ149N8 1683 aa26.65■■□□□ 1.86
CLK3-202ENST00000395066 MTHFSP49914 203 aa26.65■■□□□ 1.86
CLK3-202ENST00000395066 SAFB2Q14151 953 aaKnown RBP eCLIP26.65■■□□□ 1.86
CLK3-202ENST00000395066 RTN4Q9NQC3 1192 aaKnown RBP26.65■■□□□ 1.86
CLK3-202ENST00000395066 DAXXQ9UER7 740 aaPredicted RBP26.65■■□□□ 1.86
CLK3-202ENST00000395066 QRICH2Q9H0J4 1663 aa26.64■■□□□ 1.85
CLK3-202ENST00000395066 NFKBIBQ15653 356 aa26.64■■□□□ 1.85
CLK3-202ENST00000395066 ZNF518AQ6AHZ1 1483 aa26.63■■□□□ 1.85
CLK3-202ENST00000395066 GSE1Q14687 1217 aa26.62■■□□□ 1.85
CLK3-202ENST00000395066 CLUAP1Q96AJ1 413 aa26.62■■□□□ 1.85
CLK3-202ENST00000395066 RUNDC1Q96C34 613 aa26.62■■□□□ 1.85
CLK3-202ENST00000395066 ANO8Q9HCE9 1232 aaPredicted RBP26.62■■□□□ 1.85
CLK3-202ENST00000395066 ADGRB1O14514 1584 aa26.6■■□□□ 1.85
CLK3-202ENST00000395066 LMTK2Q8IWU2 1503 aa26.59■■□□□ 1.85
CLK3-202ENST00000395066 CGNL1Q0VF96 1302 aa26.59■■□□□ 1.85
CLK3-202ENST00000395066 RLBP1P12271 317 aa26.59■■□□□ 1.85
CLK3-202ENST00000395066 PDE3AQ14432 1141 aa26.59■■□□□ 1.85
CLK3-202ENST00000395066 PPLO60437 1756 aa26.59■■□□□ 1.85
CLK3-202ENST00000395066 SETBP1Q9Y6X0 1596 aa26.59■■□□□ 1.85
CLK3-202ENST00000395066 FRMPD1Q5SYB0 1578 aa26.58■■□□□ 1.85
CLK3-202ENST00000395066 RARSP54136 660 aaKnown RBP26.58■■□□□ 1.85
CLK3-202ENST00000395066 ZC3H13Q5T200 1668 aaKnown RBP26.58■■□□□ 1.85
CLK3-202ENST00000395066 SEC24BO95487 1268 aa26.58■■□□□ 1.85
CLK3-202ENST00000395066 CABP2Q9NPB3 220 aa26.58■■□□□ 1.85
CLK3-202ENST00000395066 NGEFQ8N5V2 710 aa26.55■■□□□ 1.84
CLK3-202ENST00000395066 RAPGEF3O95398 923 aa26.54■■□□□ 1.84
CLK3-202ENST00000395066 IQSEC2Q5JU85 1478 aa26.54■■□□□ 1.84
CLK3-202ENST00000395066 PCDHB15Q9Y5E8 787 aa26.53■■□□□ 1.84
CLK3-202ENST00000395066 U2AF1L5P0DN76 240 aaPredicted RBP26.52■■□□□ 1.84
CLK3-202ENST00000395066 U2AF1Q01081 240 aaKnown RBP eCLIP26.52■■□□□ 1.84
CLK3-202ENST00000395066 CD109Q6YHK3 1445 aa26.52■■□□□ 1.84
CLK3-202ENST00000395066 POGZQ7Z3K3 1410 aa26.52■■□□□ 1.84
CLK3-202ENST00000395066 STK26Q9P289 416 aa26.52■■□□□ 1.84
CLK3-202ENST00000395066 NPM1P06748 294 aaKnown RBP eCLIP26.52■■□□□ 1.84
CLK3-202ENST00000395066 USP19O94966 1318 aa26.51■■□□□ 1.84
CLK3-202ENST00000395066 PHF23Q9BUL5 403 aaPredicted RBP26.5■■□□□ 1.83
CLK3-202ENST00000395066 CFAP53Q96M91 514 aa26.49■■□□□ 1.83
CLK3-202ENST00000395066 TULP4Q9NRJ4 1543 aa26.49■■□□□ 1.83
CLK3-202ENST00000395066 BRPF3Q9ULD4 1205 aa26.49■■□□□ 1.83
CLK3-202ENST00000395066 GLI2P10070 1586 aa26.49■■□□□ 1.83
CLK3-202ENST00000395066 SIGLEC1Q9BZZ2 1709 aa26.48■■□□□ 1.83
CLK3-202ENST00000395066 EVC2Q86UK5 1308 aa26.48■■□□□ 1.83
CLK3-202ENST00000395066 ABCC3O15438 1527 aa26.48■■□□□ 1.83
CLK3-202ENST00000395066 TSR2Q969E8 191 aaKnown RBP26.47■■□□□ 1.83
CLK3-202ENST00000395066 FRAT2O75474 233 aaPredicted RBP26.47■■□□□ 1.83
CLK3-202ENST00000395066 WDR63Q8IWG1 891 aa26.46■■□□□ 1.83
CLK3-202ENST00000395066 HECW2Q9P2P5 1572 aa26.45■■□□□ 1.83
CLK3-202ENST00000395066 GGNBP2Q9H3C7 697 aa26.45■■□□□ 1.83
CLK3-202ENST00000395066 NINLQ9Y2I6 1382 aa26.45■■□□□ 1.82
CLK3-202ENST00000395066 U2SURPO15042 1029 aaKnown RBP26.44■■□□□ 1.82
CLK3-202ENST00000395066 RPGRIP1LQ68CZ1 1315 aa26.44■■□□□ 1.82
CLK3-202ENST00000395066 ANKRD36BQ8N2N9 1353 aa26.43■■□□□ 1.82
CLK3-202ENST00000395066 MLH3Q9UHC1 1453 aa26.43■■□□□ 1.82
CLK3-202ENST00000395066 MAPK8IP3Q9UPT6 1336 aa26.42■■□□□ 1.82
CLK3-202ENST00000395066 ARHGEF28Q8N1W1 1705 aaKnown RBP26.42■■□□□ 1.82
CLK3-202ENST00000395066 SRPK2P78362 688 aaKnown RBP26.42■■□□□ 1.82
CLK3-202ENST00000395066 IDI1Q13907 227 aa26.42■■□□□ 1.82
CLK3-202ENST00000395066 VGFO15240 615 aaPredicted RBP26.41■■□□□ 1.82
CLK3-202ENST00000395066 PDZRN3Q9UPQ7 1066 aa26.41■■□□□ 1.82
CLK3-202ENST00000395066 VIRMAQ69YN4 1812 aaKnown RBP26.4■■□□□ 1.82
CLK3-202ENST00000395066 CAMSAP1Q5T5Y3 1602 aa26.4■■□□□ 1.82
CLK3-202ENST00000395066 A0A1W2PP64 1363 aa26.39■■□□□ 1.82
CLK3-202ENST00000395066 USP32Q8NFA0 1604 aa26.39■■□□□ 1.82
CLK3-202ENST00000395066 NEXMIFQ5QGS0 1516 aa26.39■■□□□ 1.81
CLK3-202ENST00000395066 MINK1Q8N4C8 1332 aaPredicted RBP26.38■■□□□ 1.81
CLK3-202ENST00000395066 CCDC27Q2M243 656 aa26.38■■□□□ 1.81
CLK3-202ENST00000395066 PMFBP1Q8TBY8 1022 aa26.38■■□□□ 1.81
CLK3-202ENST00000395066 MYH16Q9H6N6 1097 aa26.37■■□□□ 1.81
CLK3-202ENST00000395066 PRKCSHP14314 528 aaPredicted RBP26.35■■□□□ 1.81
CLK3-202ENST00000395066 EXOSC9Q06265 439 aaKnown RBP26.35■■□□□ 1.81
CLK3-202ENST00000395066 SLKQ9H2G2 1235 aaPredicted RBP26.35■■□□□ 1.81
CLK3-202ENST00000395066 FTSJ3Q8IY81 847 aaKnown RBP26.34■■□□□ 1.81
CLK3-202ENST00000395066 NLRP1Q9C000 1473 aa26.33■■□□□ 1.81
CLK3-202ENST00000395066 MVPQ14764 893 aaKnown RBP26.33■■□□□ 1.8
CLK3-202ENST00000395066 SMC4Q9NTJ3 1288 aa26.32■■□□□ 1.8
CLK3-202ENST00000395066 ZKSCAN2Q63HK3 967 aa26.31■■□□□ 1.8
CLK3-202ENST00000395066 PRAM1Q96QH2 718 aa26.31■■□□□ 1.8
CLK3-202ENST00000395066 TRIM35Q9UPQ4 493 aa26.31■■□□□ 1.8
CLK3-202ENST00000395066 PIK3C2BO00750 1634 aa26.31■■□□□ 1.8
CLK3-202ENST00000395066 TMPOP42166 694 aaKnown RBP26.31■■□□□ 1.8
CLK3-202ENST00000395066 PLEKHF1Q96S99 279 aa26.31■■□□□ 1.8
CLK3-202ENST00000395066 FBLN1P23142 703 aa26.3■■□□□ 1.8
CLK3-202ENST00000395066 DZIP1LQ8IYY4 767 aaKnown RBP26.3■■□□□ 1.8
CLK3-202ENST00000395066 CFAP74Q9C0B2 1584 aa26.3■■□□□ 1.8
CLK3-202ENST00000395066 NSD2O96028 1365 aa26.3■■□□□ 1.8
CLK3-202ENST00000395066 RWDD1Q9H446 243 aaPredicted RBP26.29■■□□□ 1.8
CLK3-202ENST00000395066 ABCC11Q96J66 1382 aa26.29■■□□□ 1.8
CLK3-202ENST00000395066 FYB1O15117 783 aa26.29■■□□□ 1.8
CLK3-202ENST00000395066 SSH1Q8WYL5 1049 aa26.28■■□□□ 1.8
CLK3-202ENST00000395066 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.28■■□□□ 1.8
CLK3-202ENST00000395066 MYO5BQ9ULV0 1848 aa26.28■■□□□ 1.8
CLK3-202ENST00000395066 ADGRB2O60241 1585 aa26.28■■□□□ 1.8
CLK3-202ENST00000395066 TRIM27P14373 513 aa26.28■■□□□ 1.8
CLK3-202ENST00000395066 POGKQ9P215 609 aa26.26■■□□□ 1.79
CLK3-202ENST00000395066 YEATS2Q9ULM3 1422 aa26.26■■□□□ 1.79
CLK3-202ENST00000395066 DIP2CQ9Y2E4 1556 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms