RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CNGB1Q14028 1251 aaPredicted RBP36.86■■■■□ 3.49
MSX1-201ENST00000382723 NPHP4O75161 1426 aaPredicted RBP36.85■■■■□ 3.49
MSX1-201ENST00000382723 CABP2Q9NPB3 220 aa36.84■■■■□ 3.49
MSX1-201ENST00000382723 SRPK2P78362 688 aaKnown RBP36.82■■■■□ 3.48
MSX1-201ENST00000382723 MYOM1P52179 1685 aa36.81■■■■□ 3.48
MSX1-201ENST00000382723 HSPA2P54652 639 aa36.8■■■■□ 3.48
MSX1-201ENST00000382723 TMC1Q8TDI8 760 aa36.79■■■■□ 3.48
MSX1-201ENST00000382723 PRKRIP1Q9H875 184 aaPredicted RBP36.79■■■■□ 3.48
MSX1-201ENST00000382723 PUS7Q96PZ0 661 aaKnown RBP36.78■■■■□ 3.48
MSX1-201ENST00000382723 PER1O15534 1290 aaPredicted RBP36.77■■■■□ 3.48
MSX1-201ENST00000382723 CDK19Q9BWU1 502 aa36.77■■■■□ 3.48
MSX1-201ENST00000382723 PIK3R4Q99570 1358 aa36.77■■■■□ 3.48
MSX1-201ENST00000382723 SLC12A5Q9H2X9 1139 aa36.73■■■■□ 3.47
MSX1-201ENST00000382723 KCNA6P17658 529 aa36.72■■■■□ 3.47
MSX1-201ENST00000382723 PTCH1Q13635 1447 aa36.71■■■■□ 3.47
MSX1-201ENST00000382723 LMTK3Q96Q04 1460 aa36.71■■■■□ 3.47
MSX1-201ENST00000382723 XRN1Q8IZH2 1706 aaKnown RBP36.7■■■■□ 3.47
MSX1-201ENST00000382723 CCER2I3L3R5 266 aa36.69■■■■□ 3.46
MSX1-201ENST00000382723 WASLO00401 505 aaPredicted RBP36.69■■■■□ 3.46
MSX1-201ENST00000382723 KNSTRNQ9Y448 316 aa36.68■■■■□ 3.46
MSX1-201ENST00000382723 ATAD2Q6PL18 1390 aa36.67■■■■□ 3.46
MSX1-201ENST00000382723 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.63■■■■□ 3.45
MSX1-201ENST00000382723 CC2D1BQ5T0F9 858 aaKnown RBP36.63■■■■□ 3.45
MSX1-201ENST00000382723 CARD14Q9BXL6 1004 aa36.62■■■■□ 3.45
MSX1-201ENST00000382723 KTN1Q86UP2 1357 aaKnown RBP36.62■■■■□ 3.45
MSX1-201ENST00000382723 CHD2O14647 1828 aaKnown RBP36.61■■■■□ 3.45
MSX1-201ENST00000382723 NINLQ9Y2I6 1382 aa36.58■■■■□ 3.45
MSX1-201ENST00000382723 YTHDC1Q96MU7 727 aaKnown RBP36.57■■■■□ 3.45
MSX1-201ENST00000382723 ADGRB2O60241 1585 aa36.56■■■■□ 3.44
MSX1-201ENST00000382723 RALBP1Q15311 655 aa36.55■■■■□ 3.44
MSX1-201ENST00000382723 CABP1Q9NZU7 370 aa36.55■■■■□ 3.44
MSX1-201ENST00000382723 ANKRD36BQ8N2N9 1353 aa36.55■■■■□ 3.44
MSX1-201ENST00000382723 AMER1Q5JTC6 1135 aaPredicted RBP36.55■■■■□ 3.44
MSX1-201ENST00000382723 NUDT16Q96DE0 195 aaKnown RBP36.53■■■■□ 3.44
MSX1-201ENST00000382723 NSD3Q9BZ95 1437 aa36.53■■■■□ 3.44
MSX1-201ENST00000382723 RBM33Q96EV2 1170 aaKnown RBP36.52■■■■□ 3.44
MSX1-201ENST00000382723 CCDC184Q52MB2 194 aa36.51■■■■□ 3.43
MSX1-201ENST00000382723 PARD3Q8TEW0 1356 aa36.51■■■■□ 3.43
MSX1-201ENST00000382723 NUTM2FA1L443 756 aa36.49■■■■□ 3.43
MSX1-201ENST00000382723 TERF2IPQ9NYB0 399 aa36.49■■■■□ 3.43
MSX1-201ENST00000382723 A0A1W2PP64 1363 aa36.49■■■■□ 3.43
MSX1-201ENST00000382723 PRR36Q9H6K5 1346 aa36.48■■■■□ 3.43
MSX1-201ENST00000382723 PPIP5K1Q6PFW1 1433 aa36.47■■■■□ 3.43
MSX1-201ENST00000382723 MYBBP1AQ9BQG0 1328 aaKnown RBP36.46■■■■□ 3.43
MSX1-201ENST00000382723 CCDC61Q9Y6R9 512 aa36.46■■■■□ 3.43
MSX1-201ENST00000382723 HDGFL2Q7Z4V5 671 aaPredicted RBP36.46■■■■□ 3.43
MSX1-201ENST00000382723 MRS2Q9HD23 443 aa36.46■■■■□ 3.43
MSX1-201ENST00000382723 CD163L1Q9NR16 1453 aa36.45■■■■□ 3.43
MSX1-201ENST00000382723 NWD1Q149M9 1564 aa36.45■■■■□ 3.43
MSX1-201ENST00000382723 ATP7BP35670 1465 aa36.45■■■■□ 3.43
MSX1-201ENST00000382723 NPC1L1Q9UHC9 1359 aa36.44■■■■□ 3.42
MSX1-201ENST00000382723 STRCQ7RTU9 1775 aa36.43■■■■□ 3.42
MSX1-201ENST00000382723 PROSER2Q86WR7 435 aaPredicted RBP36.4■■■■□ 3.42
MSX1-201ENST00000382723 C14orf37Q86TY3 774 aa36.39■■■■□ 3.42
MSX1-201ENST00000382723 CGNL1Q0VF96 1302 aa36.39■■■■□ 3.42
MSX1-201ENST00000382723 NALCNQ8IZF0 1738 aa36.35■■■■□ 3.41
MSX1-201ENST00000382723 ADGRL3Q9HAR2 1447 aa36.34■■■■□ 3.41
MSX1-201ENST00000382723 NKTRP30414 1462 aaKnown RBP36.34■■■■□ 3.41
MSX1-201ENST00000382723 NLRP13Q86W25 1043 aa36.33■■■■□ 3.41
MSX1-201ENST00000382723 USP32Q8NFA0 1604 aa36.32■■■■□ 3.4
MSX1-201ENST00000382723 CPSF1Q10570 1443 aaKnown RBP36.31■■■■□ 3.4
MSX1-201ENST00000382723 CDC42BPGQ6DT37 1551 aa36.3■■■■□ 3.4
MSX1-201ENST00000382723 BRD4O60885 1362 aaPredicted RBP36.3■■■■□ 3.4
MSX1-201ENST00000382723 TOPAZ1Q8N9V7 1692 aa36.28■■■■□ 3.4
MSX1-201ENST00000382723 PPP2R1AP30153 589 aa36.28■■■■□ 3.4
MSX1-201ENST00000382723 MORC1Q86VD1 984 aa36.28■■■■□ 3.4
MSX1-201ENST00000382723 STRCP1A6NGW2 1772 aa36.27■■■■□ 3.4
MSX1-201ENST00000382723 PLEKHG3A1L390 1219 aa36.27■■■■□ 3.4
MSX1-201ENST00000382723 SUGP2Q8IX01 1082 aaKnown RBP eCLIP36.26■■■■□ 3.4
MSX1-201ENST00000382723 FAM9BQ8IZU0 186 aa36.26■■■■□ 3.4
MSX1-201ENST00000382723 ANKARQ7Z5J8 1434 aa36.26■■■■□ 3.4
MSX1-201ENST00000382723 FMN2Q9NZ56 1722 aa36.26■■■■□ 3.4
MSX1-201ENST00000382723 ACEP12821 1306 aa36.26■■■■□ 3.39
MSX1-201ENST00000382723 PMFBP1Q8TBY8 1022 aa36.26■■■■□ 3.39
MSX1-201ENST00000382723 NSD2O96028 1365 aa36.24■■■■□ 3.39
MSX1-201ENST00000382723 ZNF692Q9BU19 519 aaPredicted RBP36.24■■■■□ 3.39
MSX1-201ENST00000382723 GGNBP2Q9H3C7 697 aa36.24■■■■□ 3.39
MSX1-201ENST00000382723 TMEM94Q12767 1356 aa36.23■■■■□ 3.39
MSX1-201ENST00000382723 FYB1O15117 783 aa36.22■■■■□ 3.39
MSX1-201ENST00000382723 TNNT2P45379 298 aaPredicted RBP36.22■■■■□ 3.39
MSX1-201ENST00000382723 EDC4Q6P2E9 1401 aaKnown RBP36.21■■■■□ 3.39
MSX1-201ENST00000382723 ZNF335Q9H4Z2 1342 aaPredicted RBP36.19■■■■□ 3.38
MSX1-201ENST00000382723 ITSN1Q15811 1721 aa36.19■■■■□ 3.38
MSX1-201ENST00000382723 RGPD8O14715 1765 aaPredicted RBP36.19■■■■□ 3.38
MSX1-201ENST00000382723 NGDNQ8NEJ9 315 aaKnown RBP36.18■■■■□ 3.38
MSX1-201ENST00000382723 C19orf44Q9H6X5 657 aa36.18■■■■□ 3.38
MSX1-201ENST00000382723 DMRT2Q9Y5R5 561 aa36.17■■■■□ 3.38
MSX1-201ENST00000382723 AKAP12Q02952 1782 aa36.16■■■■□ 3.38
MSX1-201ENST00000382723 PNISRQ8TF01 805 aaKnown RBP36.16■■■■□ 3.38
MSX1-201ENST00000382723 MON2Q7Z3U7 1717 aa36.15■■■■□ 3.38
MSX1-201ENST00000382723 USP6P35125 1406 aa36.12■■■■□ 3.37
MSX1-201ENST00000382723 POLR3AO14802 1390 aaPredicted RBP36.12■■■■□ 3.37
MSX1-201ENST00000382723 NME9Q86XW9 330 aa36.12■■■■□ 3.37
MSX1-201ENST00000382723 NCOA3Q9Y6Q9 1424 aa36.11■■■■□ 3.37
MSX1-201ENST00000382723 ESCO1Q5FWF5 840 aa36.1■■■■□ 3.37
MSX1-201ENST00000382723 KIF20BQ96Q89 1820 aa36.1■■■■□ 3.37
MSX1-201ENST00000382723 PHF8Q9UPP1 1060 aa36.1■■■■□ 3.37
MSX1-201ENST00000382723 TTC21BQ7Z4L5 1316 aa36.09■■■■□ 3.37
MSX1-201ENST00000382723 ATF3P18847 181 aa36.08■■■■□ 3.37
MSX1-201ENST00000382723 CENPBP07199 599 aaPredicted RBP36.06■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms