RNA–Protein interactions for RNA: ENST00000370542.1

LMO4-201, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 1,260 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-201ENST00000370542 EP400Q96L91 3159 aa21.99■■□□□ 1.11
LMO4-201ENST00000370542 NHSL1Q5SYE7 1610 aa21.98■■□□□ 1.11
LMO4-201ENST00000370542 ROBO2Q9HCK4 1378 aa21.98■■□□□ 1.11
LMO4-201ENST00000370542 CCDC144AA2RUR9 1427 aa21.97■■□□□ 1.11
LMO4-201ENST00000370542 CCDC125Q86Z20 511 aa21.97■■□□□ 1.11
LMO4-201ENST00000370542 LRRC59Q96AG4 307 aaKnown RBP21.94■■□□□ 1.1
LMO4-201ENST00000370542 LAMC1P11047 1609 aa21.93■■□□□ 1.1
LMO4-201ENST00000370542 C1orf167Q5SNV9 1468 aa21.93■■□□□ 1.1
LMO4-201ENST00000370542 ADGRF5Q8IZF2 1346 aa21.93■■□□□ 1.1
LMO4-201ENST00000370542 ANKRD30BQ9BXX2 1392 aa21.93■■□□□ 1.1
LMO4-201ENST00000370542 IFT172Q9UG01 1749 aa21.92■■□□□ 1.1
LMO4-201ENST00000370542 TECPR2O15040 1411 aa21.9■■□□□ 1.1
LMO4-201ENST00000370542 PNPLA6Q8IY17 1366 aa21.9■■□□□ 1.1
LMO4-201ENST00000370542 PIK3C2GO75747 1445 aa21.88■■□□□ 1.09
LMO4-201ENST00000370542 RGL3Q3MIN7 710 aa21.87■■□□□ 1.09
LMO4-201ENST00000370542 ABCC11Q96J66 1382 aa21.87■■□□□ 1.09
LMO4-201ENST00000370542 TRPC5Q9UL62 973 aaPredicted RBP21.86■■□□□ 1.09
LMO4-201ENST00000370542 LRPPRCP42704 1394 aaKnown RBP21.86■■□□□ 1.09
LMO4-201ENST00000370542 SOS2Q07890 1332 aaPredicted RBP21.85■■□□□ 1.09
LMO4-201ENST00000370542 NRXN1Q9ULB1 1477 aa21.84■■□□□ 1.09
LMO4-201ENST00000370542 FNBP4Q8N3X1 1017 aaPredicted RBP21.84■■□□□ 1.09
LMO4-201ENST00000370542 DDX17Q92841 729 aaKnown RBP21.84■■□□□ 1.09
LMO4-201ENST00000370542 USP21Q9UK80 565 aa21.84■■□□□ 1.09
LMO4-201ENST00000370542 CDC42BPGQ6DT37 1551 aa21.83■■□□□ 1.09
LMO4-201ENST00000370542 ADAMTS2O95450 1211 aa21.83■■□□□ 1.09
LMO4-201ENST00000370542 ORAI2Q96SN7 254 aa21.83■■□□□ 1.09
LMO4-201ENST00000370542 LRP5O75197 1615 aa21.83■■□□□ 1.08
LMO4-201ENST00000370542 SIRT1Q96EB6 747 aa21.82■■□□□ 1.08
LMO4-201ENST00000370542 RAB3GAP2Q9H2M9 1393 aa21.82■■□□□ 1.08
LMO4-201ENST00000370542 ATRNO75882 1429 aa21.81■■□□□ 1.08
LMO4-201ENST00000370542 KNDC1Q76NI1 1749 aa21.81■■□□□ 1.08
LMO4-201ENST00000370542 C14orf93Q9H972 538 aaKnown RBP21.8■■□□□ 1.08
LMO4-201ENST00000370542 MYOM2P54296 1465 aa21.79■■□□□ 1.08
LMO4-201ENST00000370542 YTHDC2Q9H6S0 1430 aaKnown RBP21.78■■□□□ 1.08
LMO4-201ENST00000370542 TMEM132EQ6IEE7 984 aa21.77■■□□□ 1.08
LMO4-201ENST00000370542 WAPLQ7Z5K2 1190 aa21.77■■□□□ 1.08
LMO4-201ENST00000370542 BLMP54132 1417 aaPredicted RBP21.75■■□□□ 1.07
LMO4-201ENST00000370542 PLEKHH1Q9ULM0 1364 aa21.74■■□□□ 1.07
LMO4-201ENST00000370542 STK26Q9P289 416 aa21.74■■□□□ 1.07
LMO4-201ENST00000370542 NPHP3Q7Z494 1330 aa21.73■■□□□ 1.07
LMO4-201ENST00000370542 COL22A1Q8NFW1 1626 aaPredicted RBP21.73■■□□□ 1.07
LMO4-201ENST00000370542 PXDNQ92626 1479 aa21.72■■□□□ 1.07
LMO4-201ENST00000370542 ESCO1Q5FWF5 840 aa21.71■■□□□ 1.07
LMO4-201ENST00000370542 DEFB132Q7Z7B7 95 aa21.71■■□□□ 1.07
LMO4-201ENST00000370542 CFAP70Q5T0N1 1121 aa21.7■■□□□ 1.06
LMO4-201ENST00000370542 BCL9LQ86UU0 1499 aa21.7■■□□□ 1.06
LMO4-201ENST00000370542 FMN2Q9NZ56 1722 aa21.69■■□□□ 1.06
LMO4-201ENST00000370542 DHX57Q6P158 1386 aaKnown RBP21.69■■□□□ 1.06
LMO4-201ENST00000370542 DLC1Q96QB1 1528 aa21.67■■□□□ 1.06
LMO4-201ENST00000370542 GJD4Q96KN9 370 aaPredicted RBP21.67■■□□□ 1.06
LMO4-201ENST00000370542 STAC3Q96MF2 364 aa21.67■■□□□ 1.06
LMO4-201ENST00000370542 FOXO3O43524 673 aa21.66■■□□□ 1.06
LMO4-201ENST00000370542 ADGRB1O14514 1584 aa21.65■■□□□ 1.06
LMO4-201ENST00000370542 KIF1AQ12756 1690 aa21.63■■□□□ 1.05
LMO4-201ENST00000370542 NUTM2FA1L443 756 aa21.6■■□□□ 1.05
LMO4-201ENST00000370542 PRAM1Q96QH2 718 aa21.6■■□□□ 1.05
LMO4-201ENST00000370542 SPATA31A3Q5VYP0 1347 aa21.59■■□□□ 1.05
LMO4-201ENST00000370542 PSDA5PKW4 1024 aaPredicted RBP21.59■■□□□ 1.05
LMO4-201ENST00000370542 SF3B2Q13435 895 aaKnown RBP21.59■■□□□ 1.05
LMO4-201ENST00000370542 ADGRB2O60241 1585 aa21.58■■□□□ 1.05
LMO4-201ENST00000370542 CENPBP07199 599 aaPredicted RBP21.57■■□□□ 1.04
LMO4-201ENST00000370542 XPCQ01831 940 aaPredicted RBP21.57■■□□□ 1.04
LMO4-201ENST00000370542 MARF1Q9Y4F3 1742 aaKnown RBP21.57■■□□□ 1.04
LMO4-201ENST00000370542 RGPD8O14715 1765 aaPredicted RBP21.56■■□□□ 1.04
LMO4-201ENST00000370542 ANKARQ7Z5J8 1434 aa21.56■■□□□ 1.04
LMO4-201ENST00000370542 DCAF11Q8TEB1 546 aa21.56■■□□□ 1.04
LMO4-201ENST00000370542 PHF8Q9UPP1 1060 aa21.56■■□□□ 1.04
LMO4-201ENST00000370542 YY1P25490 414 aa21.55■■□□□ 1.04
LMO4-201ENST00000370542 KRT28Q7Z3Y7 464 aa21.55■■□□□ 1.04
LMO4-201ENST00000370542 RALGAPBQ86X10 1494 aa21.54■■□□□ 1.04
LMO4-201ENST00000370542 USP32Q8NFA0 1604 aa21.54■■□□□ 1.04
LMO4-201ENST00000370542 SBNO1A3KN83 1393 aa21.53■■□□□ 1.04
LMO4-201ENST00000370542 POGKQ9P215 609 aa21.52■■□□□ 1.04
LMO4-201ENST00000370542 GLI3P10071 1580 aa21.52■■□□□ 1.04
LMO4-201ENST00000370542 SAFB2Q14151 953 aaKnown RBP eCLIP21.51■■□□□ 1.03
LMO4-201ENST00000370542 UNC5CLQ8IV45 518 aa21.51■■□□□ 1.03
LMO4-201ENST00000370542 TRAK1Q9UPV9 953 aa21.51■■□□□ 1.03
LMO4-201ENST00000370542 KDM2AQ9Y2K7 1162 aa21.51■■□□□ 1.03
LMO4-201ENST00000370542 TNS3Q68CZ2 1445 aa21.51■■□□□ 1.03
LMO4-201ENST00000370542 SLIT2O94813 1529 aa21.5■■□□□ 1.03
LMO4-201ENST00000370542 PSME1Q06323 249 aa21.5■■□□□ 1.03
LMO4-201ENST00000370542 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.49■■□□□ 1.03
LMO4-201ENST00000370542 SEPT12Q8IYM1 358 aa21.48■■□□□ 1.03
LMO4-201ENST00000370542 ONECUT3O60422 494 aaPredicted RBP21.47■■□□□ 1.03
LMO4-201ENST00000370542 PRR36Q9H6K5 1346 aa21.47■■□□□ 1.03
LMO4-201ENST00000370542 EIF3AQ14152 1382 aaKnown RBP21.47■■□□□ 1.03
LMO4-201ENST00000370542 TULP4Q9NRJ4 1543 aa21.46■■□□□ 1.03
LMO4-201ENST00000370542 WASLO00401 505 aaPredicted RBP21.46■■□□□ 1.03
LMO4-201ENST00000370542 BAG6P46379 1132 aa21.45■■□□□ 1.02
LMO4-201ENST00000370542 ARHGEF10O15013 1369 aa21.45■■□□□ 1.02
LMO4-201ENST00000370542 BRWD3Q6RI45 1802 aa21.44■■□□□ 1.02
LMO4-201ENST00000370542 ARHGEF28Q8N1W1 1705 aaKnown RBP21.43■■□□□ 1.02
LMO4-201ENST00000370542 TRPM3Q9HCF6 1732 aaPredicted RBP21.43■■□□□ 1.02
LMO4-201ENST00000370542 KIAA1210Q9ULL0 1709 aa21.43■■□□□ 1.02
LMO4-201ENST00000370542 IFFO2Q5TF58 517 aa21.43■■□□□ 1.02
LMO4-201ENST00000370542 PMFBP1Q8TBY8 1022 aa21.43■■□□□ 1.02
LMO4-201ENST00000370542 HIRIP3Q9BW71 556 aaPredicted RBP21.43■■□□□ 1.02
LMO4-201ENST00000370542 MINK1Q8N4C8 1332 aaPredicted RBP21.43■■□□□ 1.02
LMO4-201ENST00000370542 R3HDM1Q15032 1099 aaKnown RBP21.41■■□□□ 1.02
LMO4-201ENST00000370542 KRT27Q7Z3Y8 459 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms