RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 PLEKHH1Q9ULM0 1364 aa29.92■■■□□ 2.38
LDB1-201ENST00000361198 CABP2Q9NPB3 220 aa29.92■■■□□ 2.38
LDB1-201ENST00000361198 SPATA31D1Q6ZQQ2 1576 aa29.92■■■□□ 2.38
LDB1-201ENST00000361198 PTPRMP28827 1452 aa29.9■■■□□ 2.38
LDB1-201ENST00000361198 YTHDC2Q9H6S0 1430 aaKnown RBP29.89■■■□□ 2.38
LDB1-201ENST00000361198 MORC1Q86VD1 984 aa29.89■■■□□ 2.38
LDB1-201ENST00000361198 ALKQ9UM73 1620 aa29.88■■■□□ 2.37
LDB1-201ENST00000361198 CCDC136Q96JN2 1154 aa29.88■■■□□ 2.37
LDB1-201ENST00000361198 A2ML1A8K2U0 1454 aa29.88■■■□□ 2.37
LDB1-201ENST00000361198 CCDC146Q8IYE0 955 aa29.87■■■□□ 2.37
LDB1-201ENST00000361198 USP32Q8NFA0 1604 aa29.87■■■□□ 2.37
LDB1-201ENST00000361198 ANKRD36BQ8N2N9 1353 aa29.87■■■□□ 2.37
LDB1-201ENST00000361198 ZNF521Q96K83 1311 aa29.86■■■□□ 2.37
LDB1-201ENST00000361198 PRAM1Q96QH2 718 aa29.86■■■□□ 2.37
LDB1-201ENST00000361198 POLR3AO14802 1390 aaPredicted RBP29.86■■■□□ 2.37
LDB1-201ENST00000361198 CGNL1Q0VF96 1302 aa29.85■■■□□ 2.37
LDB1-201ENST00000361198 TNNT2P45379 298 aaPredicted RBP29.84■■■□□ 2.37
LDB1-201ENST00000361198 SRPK2P78362 688 aaKnown RBP29.82■■■□□ 2.36
LDB1-201ENST00000361198 MINK1Q8N4C8 1332 aaPredicted RBP29.82■■■□□ 2.36
LDB1-201ENST00000361198 POGKQ9P215 609 aa29.82■■■□□ 2.36
LDB1-201ENST00000361198 RIMS2Q9UQ26 1411 aa29.8■■■□□ 2.36
LDB1-201ENST00000361198 APAF1O14727 1248 aa29.8■■■□□ 2.36
LDB1-201ENST00000361198 ZMYM3Q14202 1370 aa29.79■■■□□ 2.36
LDB1-201ENST00000361198 DUSP27Q5VZP5 1158 aa29.79■■■□□ 2.36
LDB1-201ENST00000361198 ESF1Q9H501 851 aaKnown RBP29.79■■■□□ 2.36
LDB1-201ENST00000361198 GOLGA2Q08379 1002 aa29.78■■■□□ 2.36
LDB1-201ENST00000361198 EXOC6Q8TAG9 804 aa29.77■■■□□ 2.36
LDB1-201ENST00000361198 A0A1W2PP64 1363 aa29.76■■■□□ 2.35
LDB1-201ENST00000361198 NINLQ9Y2I6 1382 aa29.76■■■□□ 2.35
LDB1-201ENST00000361198 SHPRHQ149N8 1683 aa29.74■■■□□ 2.35
LDB1-201ENST00000361198 NSD2O96028 1365 aa29.74■■■□□ 2.35
LDB1-201ENST00000361198 ATAD2Q6PL18 1390 aa29.74■■■□□ 2.35
LDB1-201ENST00000361198 PLIN1O60240 522 aa29.73■■■□□ 2.35
LDB1-201ENST00000361198 MTHFSP49914 203 aa29.73■■■□□ 2.35
LDB1-201ENST00000361198 ERICH6Q7L0X2 663 aa29.73■■■□□ 2.35
LDB1-201ENST00000361198 SETD1AO15047 1707 aaKnown RBP29.72■■■□□ 2.35
LDB1-201ENST00000361198 SLFN5Q08AF3 891 aa29.71■■■□□ 2.35
LDB1-201ENST00000361198 ABCC11Q96J66 1382 aa29.7■■■□□ 2.35
LDB1-201ENST00000361198 CDK19Q9BWU1 502 aa29.69■■■□□ 2.34
LDB1-201ENST00000361198 SPINK5Q9NQ38 1064 aaPredicted RBP29.68■■■□□ 2.34
LDB1-201ENST00000361198 TRMT2AQ8IZ69 625 aaKnown RBP29.68■■■□□ 2.34
LDB1-201ENST00000361198 CD163L1Q9NR16 1453 aa29.67■■■□□ 2.34
LDB1-201ENST00000361198 WAPLQ7Z5K2 1190 aa29.67■■■□□ 2.34
LDB1-201ENST00000361198 DLC1Q96QB1 1528 aa29.66■■■□□ 2.34
LDB1-201ENST00000361198 TERF2IPQ9NYB0 399 aa29.66■■■□□ 2.34
LDB1-201ENST00000361198 NRXN3Q9Y4C0 1643 aa29.66■■■□□ 2.34
LDB1-201ENST00000361198 NGEFQ8N5V2 710 aa29.65■■■□□ 2.34
LDB1-201ENST00000361198 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.64■■■□□ 2.34
LDB1-201ENST00000361198 CFAP53Q96M91 514 aa29.64■■■□□ 2.33
LDB1-201ENST00000361198 GGNBP2Q9H3C7 697 aa29.63■■■□□ 2.33
LDB1-201ENST00000361198 TNRQ92752 1358 aa29.63■■■□□ 2.33
LDB1-201ENST00000361198 DMRT2Q9Y5R5 561 aa29.62■■■□□ 2.33
LDB1-201ENST00000361198 CABP1Q9NZU7 370 aa29.61■■■□□ 2.33
LDB1-201ENST00000361198 METP08581 1390 aa29.6■■■□□ 2.33
LDB1-201ENST00000361198 FYB1O15117 783 aa29.6■■■□□ 2.33
LDB1-201ENST00000361198 RUNDC1Q96C34 613 aa29.6■■■□□ 2.33
LDB1-201ENST00000361198 E9PSI1 815 aa29.59■■■□□ 2.33
LDB1-201ENST00000361198 WWC1Q8IX03 1113 aa29.58■■■□□ 2.33
LDB1-201ENST00000361198 CRBNQ96SW2 442 aa29.58■■■□□ 2.33
LDB1-201ENST00000361198 C20orf194Q5TEA3 1177 aa29.57■■■□□ 2.32
LDB1-201ENST00000361198 HDGFL2Q7Z4V5 671 aaPredicted RBP29.57■■■□□ 2.32
LDB1-201ENST00000361198 NLRP1Q9C000 1473 aa29.57■■■□□ 2.32
LDB1-201ENST00000361198 NKTRP30414 1462 aaKnown RBP29.57■■■□□ 2.32
LDB1-201ENST00000361198 TCP11L2Q8N4U5 519 aa29.55■■■□□ 2.32
LDB1-201ENST00000361198 IQSEC2Q5JU85 1478 aa29.55■■■□□ 2.32
LDB1-201ENST00000361198 HDGFP51858 240 aaKnown RBP29.55■■■□□ 2.32
LDB1-201ENST00000361198 NEUROD2Q15784 382 aa29.54■■■□□ 2.32
LDB1-201ENST00000361198 NOP58Q9Y2X3 529 aaKnown RBP29.54■■■□□ 2.32
LDB1-201ENST00000361198 ANKRD26Q9UPS8 1709 aa29.54■■■□□ 2.32
LDB1-201ENST00000361198 MED14O60244 1454 aa29.54■■■□□ 2.32
LDB1-201ENST00000361198 RRP7AQ9Y3A4 280 aaKnown RBP29.54■■■□□ 2.32
LDB1-201ENST00000361198 UBR1Q8IWV7 1749 aa29.53■■■□□ 2.32
LDB1-201ENST00000361198 TXNDC2Q86VQ3 553 aa29.52■■■□□ 2.32
LDB1-201ENST00000361198 TMEM2Q9UHN6 1383 aa29.52■■■□□ 2.32
LDB1-201ENST00000361198 U2AF1L5P0DN76 240 aaPredicted RBP29.5■■■□□ 2.31
LDB1-201ENST00000361198 U2AF1Q01081 240 aaKnown RBP eCLIP29.5■■■□□ 2.31
LDB1-201ENST00000361198 TCERG1O14776 1098 aaKnown RBP29.5■■■□□ 2.31
LDB1-201ENST00000361198 ANP32AP39687 249 aaKnown RBP29.48■■■□□ 2.31
LDB1-201ENST00000361198 PHF23Q9BUL5 403 aaPredicted RBP29.48■■■□□ 2.31
LDB1-201ENST00000361198 WASLO00401 505 aaPredicted RBP29.48■■■□□ 2.31
LDB1-201ENST00000361198 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.47■■■□□ 2.31
LDB1-201ENST00000361198 IPO9Q96P70 1041 aaKnown RBP29.47■■■□□ 2.31
LDB1-201ENST00000361198 ATP7BP35670 1465 aa29.46■■■□□ 2.31
LDB1-201ENST00000361198 KIF20BQ96Q89 1820 aa29.46■■■□□ 2.31
LDB1-201ENST00000361198 CEBPAP49715 358 aaPredicted RBP29.46■■■□□ 2.31
LDB1-201ENST00000361198 COL3A1P02461 1466 aaPredicted RBP29.45■■■□□ 2.31
LDB1-201ENST00000361198 TECPR2O15040 1411 aa29.45■■■□□ 2.3
LDB1-201ENST00000361198 KNDC1Q76NI1 1749 aa29.45■■■□□ 2.3
LDB1-201ENST00000361198 FAM135BQ49AJ0 1406 aa29.44■■■□□ 2.3
LDB1-201ENST00000361198 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.44■■■□□ 2.3
LDB1-201ENST00000361198 BCAR3O75815 825 aa29.43■■■□□ 2.3
LDB1-201ENST00000361198 SIRT1Q96EB6 747 aa29.43■■■□□ 2.3
LDB1-201ENST00000361198 PAK3O75914 559 aaPredicted RBP29.42■■■□□ 2.3
LDB1-201ENST00000361198 CCDC27Q2M243 656 aa29.42■■■□□ 2.3
LDB1-201ENST00000361198 MS4A1P11836 297 aa29.42■■■□□ 2.3
LDB1-201ENST00000361198 U2SURPO15042 1029 aaKnown RBP29.41■■■□□ 2.3
LDB1-201ENST00000361198 WDR63Q8IWG1 891 aa29.41■■■□□ 2.3
LDB1-201ENST00000361198 PPIP5K1Q6PFW1 1433 aa29.4■■■□□ 2.3
LDB1-201ENST00000361198 ADAMTS13Q76LX8 1427 aa29.4■■■□□ 2.3
LDB1-201ENST00000361198 CPS1P31327 1500 aa29.4■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms