RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 NECTIN2Q92692 538 aa12.36□□□□□ -0.43
CLIP1-202ENST00000358808 RRP7AQ9Y3A4 280 aaKnown RBP12.36□□□□□ -0.43
CLIP1-202ENST00000358808 RAB3GAP2Q9H2M9 1393 aa12.35□□□□□ -0.43
CLIP1-202ENST00000358808 MAP7D2Q96T17 732 aa12.35□□□□□ -0.43
CLIP1-202ENST00000358808 PSME1Q06323 249 aa12.35□□□□□ -0.43
CLIP1-202ENST00000358808 KIAA0586Q9BVV6 1533 aa12.35□□□□□ -0.43
CLIP1-202ENST00000358808 ARHGAP5Q13017 1502 aa12.34□□□□□ -0.43
CLIP1-202ENST00000358808 BRMS1Q9HCU9 246 aa12.34□□□□□ -0.43
CLIP1-202ENST00000358808 DDX58O95786 925 aaKnown RBP12.33□□□□□ -0.44
CLIP1-202ENST00000358808 SKIDA1Q1XH10 827 aa12.33□□□□□ -0.44
CLIP1-202ENST00000358808 GRIN2AQ12879 1464 aa12.33□□□□□ -0.44
CLIP1-202ENST00000358808 CCDC144AA2RUR9 1427 aa12.33□□□□□ -0.44
CLIP1-202ENST00000358808 G3BP1Q13283 466 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLIP1-202ENST00000358808 CAGE1Q8TC20 777 aa12.33□□□□□ -0.44
CLIP1-202ENST00000358808 CCDC97Q96F63 343 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-202ENST00000358808 ACBD3Q9H3P7 528 aa12.33□□□□□ -0.44
CLIP1-202ENST00000358808 ATF3P18847 181 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 WASHC2AQ641Q2 1341 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 RNF20Q5VTR2 975 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 CCDC191Q8NCU4 936 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 IQGAP2Q13576 1575 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 DCTN1Q14203 1278 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 EVC2Q86UK5 1308 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 HECW1Q76N89 1606 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 KDM4AO75164 1064 aa12.32□□□□□ -0.44
CLIP1-202ENST00000358808 HSP90AA2PQ14568 343 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-202ENST00000358808 PPM1FP49593 454 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-202ENST00000358808 MYO6Q9UM54 1294 aa12.31□□□□□ -0.44
CLIP1-202ENST00000358808 MINK1Q8N4C8 1332 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-202ENST00000358808 SYCP1Q15431 976 aa12.31□□□□□ -0.44
CLIP1-202ENST00000358808 ZRSR2Q15696 482 aaKnown RBP12.31□□□□□ -0.44
CLIP1-202ENST00000358808 CASKIN1Q8WXD9 1431 aa12.31□□□□□ -0.44
CLIP1-202ENST00000358808 SASS6Q6UVJ0 657 aa12.31□□□□□ -0.44
CLIP1-202ENST00000358808 WASHC4Q2M389 1173 aa12.3□□□□□ -0.44
CLIP1-202ENST00000358808 MNS1Q8NEH6 495 aa12.3□□□□□ -0.44
CLIP1-202ENST00000358808 VPS37CA5D8V6 355 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-202ENST00000358808 SF3B2Q13435 895 aaKnown RBP12.3□□□□□ -0.44
CLIP1-202ENST00000358808 NEFHP12036 1026 aa12.3□□□□□ -0.44
CLIP1-202ENST00000358808 SKOR2Q2VWA4 1001 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-202ENST00000358808 KIF21AQ7Z4S6 1674 aa12.3□□□□□ -0.44
CLIP1-202ENST00000358808 PLIN1O60240 522 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 RALYLQ86SE5 291 aaKnown RBP12.29□□□□□ -0.44
CLIP1-202ENST00000358808 PDILTQ8N807 584 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 BCL2L13Q9BXK5 485 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 ANKRD62A6NC57 917 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 NEUROD6Q96NK8 337 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 TTLL5Q6EMB2 1281 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 OLFM4Q6UX06 510 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 L3MBTL2Q969R5 705 aa12.29□□□□□ -0.44
CLIP1-202ENST00000358808 XBP1P17861 261 aa12.28□□□□□ -0.44
CLIP1-202ENST00000358808 CDK5RAP3Q96JB5 506 aa12.28□□□□□ -0.44
CLIP1-202ENST00000358808 FYCO1Q9BQS8 1478 aa12.28□□□□□ -0.44
CLIP1-202ENST00000358808 HSP90B2PQ58FF3 399 aa12.28□□□□□ -0.44
CLIP1-202ENST00000358808 CCDC73Q6ZRK6 1079 aa12.28□□□□□ -0.44
CLIP1-202ENST00000358808 NOM1Q5C9Z4 860 aaKnown RBP12.28□□□□□ -0.44
CLIP1-202ENST00000358808 PLCD4Q9BRC7 762 aa12.28□□□□□ -0.44
CLIP1-202ENST00000358808 ARGLU1Q9NWB6 273 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-202ENST00000358808 ZNF608Q9ULD9 1512 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-202ENST00000358808 BIVM-ERCC5R4GMW8 1640 aa12.27□□□□□ -0.44
CLIP1-202ENST00000358808 KRT18P05783 430 aaKnown RBP12.27□□□□□ -0.44
CLIP1-202ENST00000358808 BCL11BQ9C0K0 894 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-202ENST00000358808 CGNL1Q0VF96 1302 aa12.27□□□□□ -0.45
CLIP1-202ENST00000358808 REC8O95072 547 aa12.27□□□□□ -0.45
CLIP1-202ENST00000358808 IBSPP21815 317 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-202ENST00000358808 MYOM3Q5VTT5 1437 aa12.26□□□□□ -0.45
CLIP1-202ENST00000358808 FAM177BA6PVY3 158 aa12.26□□□□□ -0.45
CLIP1-202ENST00000358808 SMC3Q9UQE7 1217 aa12.26□□□□□ -0.45
CLIP1-202ENST00000358808 PDCL3Q9H2J4 239 aa12.26□□□□□ -0.45
CLIP1-202ENST00000358808 ZKSCAN2Q63HK3 967 aa12.26□□□□□ -0.45
CLIP1-202ENST00000358808 NEBLO76041 1014 aa12.25□□□□□ -0.45
CLIP1-202ENST00000358808 H0YHG0 523 aa12.25□□□□□ -0.45
CLIP1-202ENST00000358808 RIC3Q7Z5B4 369 aa12.25□□□□□ -0.45
CLIP1-202ENST00000358808 IFT57Q9NWB7 429 aa12.25□□□□□ -0.45
CLIP1-202ENST00000358808 PLEKHH2Q8IVE3 1493 aa12.25□□□□□ -0.45
CLIP1-202ENST00000358808 ANKRD18AQ8IVF6 992 aa12.25□□□□□ -0.45
CLIP1-202ENST00000358808 FKBP5Q13451 457 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-202ENST00000358808 AIMP1Q12904 312 aaKnown RBP12.24□□□□□ -0.45
CLIP1-202ENST00000358808 ATP2B2Q01814 1243 aa12.24□□□□□ -0.45
CLIP1-202ENST00000358808 SEPT7Q16181 437 aaKnown RBP12.24□□□□□ -0.45
CLIP1-202ENST00000358808 RAPGEF4Q8WZA2 1011 aa12.24□□□□□ -0.45
CLIP1-202ENST00000358808 MAGEC2Q9UBF1 373 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-202ENST00000358808 PRXQ9BXM0 1461 aa12.23□□□□□ -0.45
CLIP1-202ENST00000358808 PANK3Q9H999 370 aa12.23□□□□□ -0.45
CLIP1-202ENST00000358808 POGZQ7Z3K3 1410 aa12.23□□□□□ -0.45
CLIP1-202ENST00000358808 NLRP13Q86W25 1043 aa12.23□□□□□ -0.45
CLIP1-202ENST00000358808 ERC2O15083 957 aa12.22□□□□□ -0.45
CLIP1-202ENST00000358808 WDR62O43379 1518 aa12.22□□□□□ -0.45
CLIP1-202ENST00000358808 PHLDB1Q86UU1 1377 aa12.22□□□□□ -0.45
CLIP1-202ENST00000358808 SLC3A2P08195 630 aaKnown RBP12.22□□□□□ -0.45
CLIP1-202ENST00000358808 EHBP1L1Q8N3D4 1523 aa12.22□□□□□ -0.45
CLIP1-202ENST00000358808 MPHOSPH10O00566 681 aaKnown RBP12.22□□□□□ -0.45
CLIP1-202ENST00000358808 SART3Q15020 963 aaKnown RBP12.22□□□□□ -0.45
CLIP1-202ENST00000358808 ERCC4Q92889 916 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-202ENST00000358808 KIF15Q9NS87 1388 aa12.22□□□□□ -0.45
CLIP1-202ENST00000358808 NAT10Q9H0A0 1025 aaKnown RBP12.21□□□□□ -0.45
CLIP1-202ENST00000358808 TBC1D2BQ9UPU7 963 aa12.21□□□□□ -0.45
CLIP1-202ENST00000358808 ATP2B1P20020 1258 aa12.21□□□□□ -0.46
CLIP1-202ENST00000358808 PDE4AP27815 886 aa12.21□□□□□ -0.46
CLIP1-202ENST00000358808 ST20-MTHFSA0A0A6YYL1 179 aa12.2□□□□□ -0.46
CLIP1-202ENST00000358808 ENOX2Q16206 610 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms