RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 DIAPH1O60610 1272 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-202ENST00000356786 PNISRQ8TF01 805 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-202ENST00000356786 CCDC9Q9Y3X0 531 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-202ENST00000356786 ARGLU1Q9NWB6 273 aaPredicted RBP23.7■■□□□ 1.38
CCDC88B-202ENST00000356786 MNS1Q8NEH6 495 aa23.7■■□□□ 1.38
CCDC88B-202ENST00000356786 RRP9O43818 475 aaKnown RBP23.7■■□□□ 1.38
CCDC88B-202ENST00000356786 EVC2Q86UK5 1308 aa23.69■■□□□ 1.38
CCDC88B-202ENST00000356786 PDE4CQ08493 712 aa23.69■■□□□ 1.38
CCDC88B-202ENST00000356786 CSB-PGBD3P0DP91 1061 aa23.69■■□□□ 1.38
CCDC88B-202ENST00000356786 NUTM2FA1L443 756 aa23.68■■□□□ 1.38
CCDC88B-202ENST00000356786 ANKRD50Q9ULJ7 1429 aa23.68■■□□□ 1.38
CCDC88B-202ENST00000356786 PDE3AQ14432 1141 aa23.67■■□□□ 1.38
CCDC88B-202ENST00000356786 MCM4P33991 863 aa23.67■■□□□ 1.38
CCDC88B-202ENST00000356786 CCDC70Q6NSX1 233 aa23.66■■□□□ 1.38
CCDC88B-202ENST00000356786 NGDNQ8NEJ9 315 aaKnown RBP23.66■■□□□ 1.38
CCDC88B-202ENST00000356786 FBXW7Q969H0 707 aa23.66■■□□□ 1.38
CCDC88B-202ENST00000356786 SMG6Q86US8 1419 aaKnown RBP23.66■■□□□ 1.38
CCDC88B-202ENST00000356786 EHBP1L1Q8N3D4 1523 aa23.65■■□□□ 1.38
CCDC88B-202ENST00000356786 SYNJ2O15056 1496 aa23.64■■□□□ 1.38
CCDC88B-202ENST00000356786 BCAR3O75815 825 aa23.64■■□□□ 1.38
CCDC88B-202ENST00000356786 CPLX2Q6PUV4 134 aaKnown RBP23.64■■□□□ 1.38
CCDC88B-202ENST00000356786 CCDC73Q6ZRK6 1079 aa23.64■■□□□ 1.37
CCDC88B-202ENST00000356786 TCP11L2Q8N4U5 519 aa23.64■■□□□ 1.37
CCDC88B-202ENST00000356786 RNF20Q5VTR2 975 aa23.63■■□□□ 1.37
CCDC88B-202ENST00000356786 COG3Q96JB2 828 aa23.63■■□□□ 1.37
CCDC88B-202ENST00000356786 ROCK1Q13464 1354 aa23.63■■□□□ 1.37
CCDC88B-202ENST00000356786 NEK4P51957 841 aa23.63■■□□□ 1.37
CCDC88B-202ENST00000356786 TSPY26PQ9H489 355 aa23.63■■□□□ 1.37
CCDC88B-202ENST00000356786 IPO7O95373 1038 aaKnown RBP23.62■■□□□ 1.37
CCDC88B-202ENST00000356786 IFIT2P09913 472 aaKnown RBP23.62■■□□□ 1.37
CCDC88B-202ENST00000356786 TRIM5Q9C035 493 aa23.62■■□□□ 1.37
CCDC88B-202ENST00000356786 CCDC66A2RUB6 948 aa23.62■■□□□ 1.37
CCDC88B-202ENST00000356786 FKBP5Q13451 457 aaPredicted RBP23.61■■□□□ 1.37
CCDC88B-202ENST00000356786 CPLX1O14810 134 aa23.61■■□□□ 1.37
CCDC88B-202ENST00000356786 RABEP1Q15276 862 aa23.61■■□□□ 1.37
CCDC88B-202ENST00000356786 NECTIN2Q92692 538 aa23.61■■□□□ 1.37
CCDC88B-202ENST00000356786 MPNDQ8N594 471 aa23.61■■□□□ 1.37
CCDC88B-202ENST00000356786 C9orf78Q9NZ63 289 aaPredicted RBP23.61■■□□□ 1.37
CCDC88B-202ENST00000356786 GNAI1P63096 354 aa23.6■■□□□ 1.37
CCDC88B-202ENST00000356786 BIVM-ERCC5R4GMW8 1640 aa23.6■■□□□ 1.37
CCDC88B-202ENST00000356786 MIA2Q96PC5 1412 aa23.6■■□□□ 1.37
CCDC88B-202ENST00000356786 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.59■■□□□ 1.37
CCDC88B-202ENST00000356786 PPP2R1AP30153 589 aa23.59■■□□□ 1.37
CCDC88B-202ENST00000356786 MINK1Q8N4C8 1332 aaPredicted RBP23.59■■□□□ 1.37
CCDC88B-202ENST00000356786 URB2Q14146 1524 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-202ENST00000356786 KIAA0586Q9BVV6 1533 aa23.59■■□□□ 1.37
CCDC88B-202ENST00000356786 EIF2S2P20042 333 aaKnown RBP23.58■■□□□ 1.37
CCDC88B-202ENST00000356786 HSP90B2PQ58FF3 399 aa23.58■■□□□ 1.37
CCDC88B-202ENST00000356786 NCBP3Q53F19 620 aaKnown RBP23.58■■□□□ 1.36
CCDC88B-202ENST00000356786 TROQ12816 1431 aaPredicted RBP23.58■■□□□ 1.36
CCDC88B-202ENST00000356786 CCDC27Q2M243 656 aa23.57■■□□□ 1.36
CCDC88B-202ENST00000356786 HECW1Q76N89 1606 aa23.57■■□□□ 1.36
CCDC88B-202ENST00000356786 UQCRHLA0A096LP55 91 aa23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 VGFO15240 615 aaPredicted RBP23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 UQCRHP07919 91 aa23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 AKAP17AQ02040 695 aaKnown RBP23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 NOM1Q5C9Z4 860 aaKnown RBP23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 CEP89Q96ST8 783 aa23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 NBPF8Q3BBV2 869 aa23.56■■□□□ 1.36
CCDC88B-202ENST00000356786 LETM1O95202 739 aaPredicted RBP23.55■■□□□ 1.36
CCDC88B-202ENST00000356786 SDF4Q9BRK5 362 aa23.55■■□□□ 1.36
CCDC88B-202ENST00000356786 TRIM29Q14134 588 aa23.55■■□□□ 1.36
CCDC88B-202ENST00000356786 MTHFSP49914 203 aa23.55■■□□□ 1.36
CCDC88B-202ENST00000356786 AFAP1Q8N556 730 aa23.55■■□□□ 1.36
CCDC88B-202ENST00000356786 FOSBP53539 338 aa23.54■■□□□ 1.36
CCDC88B-202ENST00000356786 CUL7Q14999 1698 aa23.54■■□□□ 1.36
CCDC88B-202ENST00000356786 FIBPO43427 364 aa23.54■■□□□ 1.36
CCDC88B-202ENST00000356786 TEFQ10587 303 aa23.54■■□□□ 1.36
CCDC88B-202ENST00000356786 ANKRD20A12PQ8NF67 263 aa23.54■■□□□ 1.36
CCDC88B-202ENST00000356786 SYNE3Q6ZMZ3 975 aa23.54■■□□□ 1.36
CCDC88B-202ENST00000356786 ARHGAP5Q13017 1502 aa23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 HFM1A2PYH4 1435 aa23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 MCM2P49736 904 aa23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 EXOSC9Q06265 439 aaKnown RBP23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 HMOX1P09601 288 aa23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 SPC24Q8NBT2 197 aa23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 K7ELQ4 463 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 PCF11O94913 1555 aaKnown RBP23.53■■□□□ 1.36
CCDC88B-202ENST00000356786 PATL2C9JE40 543 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-202ENST00000356786 IQGAP2Q13576 1575 aa23.52■■□□□ 1.36
CCDC88B-202ENST00000356786 ACBD3Q9H3P7 528 aa23.52■■□□□ 1.36
CCDC88B-202ENST00000356786 EPRSP07814 1512 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-202ENST00000356786 CDK13Q14004 1512 aaKnown RBP23.51■■□□□ 1.35
CCDC88B-202ENST00000356786 ZSCAN30Q86W11 494 aa23.51■■□□□ 1.35
CCDC88B-202ENST00000356786 PCMTD1Q96MG8 357 aaPredicted RBP23.51■■□□□ 1.35
CCDC88B-202ENST00000356786 HOOK1Q9UJC3 728 aaKnown RBP23.51■■□□□ 1.35
CCDC88B-202ENST00000356786 MARCH6O60337 910 aa23.51■■□□□ 1.35
CCDC88B-202ENST00000356786 NEXNQ0ZGT2 675 aa23.5■■□□□ 1.35
CCDC88B-202ENST00000356786 NAT10Q9H0A0 1025 aaKnown RBP23.5■■□□□ 1.35
CCDC88B-202ENST00000356786 GGNBP2Q9H3C7 697 aa23.5■■□□□ 1.35
CCDC88B-202ENST00000356786 CIZ1Q9ULV3 898 aaPredicted RBP23.5■■□□□ 1.35
CCDC88B-202ENST00000356786 ERC2O15083 957 aa23.5■■□□□ 1.35
CCDC88B-202ENST00000356786 CWC22Q9HCG8 908 aaKnown RBP23.5■■□□□ 1.35
CCDC88B-202ENST00000356786 G3BP1Q13283 466 aaKnown RBP eCLIP23.49■■□□□ 1.35
CCDC88B-202ENST00000356786 SKAP1Q86WV1 359 aa23.49■■□□□ 1.35
CCDC88B-202ENST00000356786 LRRFIP1Q32MZ4 808 aaKnown RBP23.49■■□□□ 1.35
CCDC88B-202ENST00000356786 C1orf115Q9H7X2 142 aa23.49■■□□□ 1.35
CCDC88B-202ENST00000356786 HSP90AB4PQ58FF6 505 aa23.48■■□□□ 1.35
CCDC88B-202ENST00000356786 CWC15Q9P013 229 aaKnown RBP23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms