RNA–Protein interactions for RNA: ENST00000352993.7

BRCA1-201, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 3,668 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-201ENST00000352993 TESK2Q96S53 571 aa9.58□□□□□ -0.88
BRCA1-201ENST00000352993 PRDM10Q9NQV6 1147 aa9.58□□□□□ -0.88
BRCA1-201ENST00000352993 DDX49Q9Y6V7 483 aaKnown RBP9.58□□□□□ -0.88
BRCA1-201ENST00000352993 CALD1Q05682 793 aaKnown RBP9.57□□□□□ -0.88
BRCA1-201ENST00000352993 SKOR2Q2VWA4 1001 aaPredicted RBP9.57□□□□□ -0.88
BRCA1-201ENST00000352993 FER1L4A9Z1Z3 1794 aa9.57□□□□□ -0.88
BRCA1-201ENST00000352993 CCDC144AA2RUR9 1427 aa9.57□□□□□ -0.88
BRCA1-201ENST00000352993 NUP153P49790 1475 aaKnown RBP9.56□□□□□ -0.88
BRCA1-201ENST00000352993 RLBP1P12271 317 aa9.56□□□□□ -0.88
BRCA1-201ENST00000352993 INSRP06213 1382 aa9.56□□□□□ -0.88
BRCA1-201ENST00000352993 CAMSAP2Q08AD1 1489 aa9.56□□□□□ -0.88
BRCA1-201ENST00000352993 ITSN2Q9NZM3 1697 aa9.56□□□□□ -0.88
BRCA1-201ENST00000352993 HNRNPMP52272 730 aaKnown RBP eCLIP9.55□□□□□ -0.88
BRCA1-201ENST00000352993 MAGI2Q86UL8 1455 aa9.55□□□□□ -0.88
BRCA1-201ENST00000352993 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.55□□□□□ -0.88
BRCA1-201ENST00000352993 ARHGEF12Q9NZN5 1544 aa9.55□□□□□ -0.88
BRCA1-201ENST00000352993 ZHX1Q9UKY1 873 aaPredicted RBP9.55□□□□□ -0.88
BRCA1-201ENST00000352993 MADDQ8WXG6 1647 aa9.55□□□□□ -0.88
BRCA1-201ENST00000352993 XPCQ01831 940 aaPredicted RBP9.55□□□□□ -0.88
BRCA1-201ENST00000352993 UQCRHLA0A096LP55 91 aa9.55□□□□□ -0.88
BRCA1-201ENST00000352993 OFD1O75665 1012 aa9.55□□□□□ -0.88
BRCA1-201ENST00000352993 UQCRHP07919 91 aa9.55□□□□□ -0.88
BRCA1-201ENST00000352993 ZNF142P52746 1687 aaPredicted RBP9.55□□□□□ -0.88
BRCA1-201ENST00000352993 CDC42BPBQ9Y5S2 1711 aa9.54□□□□□ -0.88
BRCA1-201ENST00000352993 FAM69CQ0P6D2 419 aa9.54□□□□□ -0.88
BRCA1-201ENST00000352993 TRMT2AQ8IZ69 625 aaKnown RBP9.54□□□□□ -0.88
BRCA1-201ENST00000352993 DNTTIP2Q5QJE6 756 aaKnown RBP9.54□□□□□ -0.88
BRCA1-201ENST00000352993 WWC1Q8IX03 1113 aa9.54□□□□□ -0.88
BRCA1-201ENST00000352993 NLRP1Q9C000 1473 aa9.54□□□□□ -0.88
BRCA1-201ENST00000352993 CDCA8Q53HL2 280 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 MAP7D2Q96T17 732 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 E9PCH4 1651 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 PREX2Q70Z35 1606 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 RARSP54136 660 aaKnown RBP9.53□□□□□ -0.88
BRCA1-201ENST00000352993 AMER1Q5JTC6 1135 aaPredicted RBP9.53□□□□□ -0.88
BRCA1-201ENST00000352993 ITPRIPQ8IWB1 547 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 STRCQ7RTU9 1775 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 RIPK4P57078 832 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 PRAG1Q86YV5 1406 aa9.53□□□□□ -0.88
BRCA1-201ENST00000352993 PTMSP20962 102 aa9.52□□□□□ -0.88
BRCA1-201ENST00000352993 PTMAP06454 111 aaKnown RBP9.52□□□□□ -0.89
BRCA1-201ENST00000352993 SSFA2P28290 1259 aa9.52□□□□□ -0.89
BRCA1-201ENST00000352993 CAVIN1Q6NZI2 390 aaKnown RBP9.52□□□□□ -0.89
BRCA1-201ENST00000352993 NINLQ9Y2I6 1382 aa9.51□□□□□ -0.89
BRCA1-201ENST00000352993 PLEKHD1A6NEE1 506 aa9.51□□□□□ -0.89
BRCA1-201ENST00000352993 MCTP1Q6DN14 999 aa9.51□□□□□ -0.89
BRCA1-201ENST00000352993 LNPKQ9C0E8 428 aa9.51□□□□□ -0.89
BRCA1-201ENST00000352993 RIMS1Q86UR5 1692 aaKnown RBP9.51□□□□□ -0.89
BRCA1-201ENST00000352993 DZIP1LQ8IYY4 767 aaKnown RBP9.5□□□□□ -0.89
BRCA1-201ENST00000352993 PRDM4Q9UKN5 801 aa9.5□□□□□ -0.89
BRCA1-201ENST00000352993 ZKSCAN2Q63HK3 967 aa9.5□□□□□ -0.89
BRCA1-201ENST00000352993 CD109Q6YHK3 1445 aa9.5□□□□□ -0.89
BRCA1-201ENST00000352993 LMTK3Q96Q04 1460 aa9.5□□□□□ -0.89
BRCA1-201ENST00000352993 VIRMAQ69YN4 1812 aaKnown RBP9.5□□□□□ -0.89
BRCA1-201ENST00000352993 SMC4Q9NTJ3 1288 aa9.5□□□□□ -0.89
BRCA1-201ENST00000352993 AGLP35573 1532 aa9.49□□□□□ -0.89
BRCA1-201ENST00000352993 CDC42BPAQ5VT25 1732 aa9.49□□□□□ -0.89
BRCA1-201ENST00000352993 C9orf84Q5VXU9 1444 aa9.49□□□□□ -0.89
BRCA1-201ENST00000352993 MVPQ14764 893 aaKnown RBP9.49□□□□□ -0.89
BRCA1-201ENST00000352993 RAB3GAP1Q15042 981 aa9.49□□□□□ -0.89
BRCA1-201ENST00000352993 TCP11L2Q8N4U5 519 aa9.49□□□□□ -0.89
BRCA1-201ENST00000352993 CIZ1Q9ULV3 898 aaPredicted RBP9.49□□□□□ -0.89
BRCA1-201ENST00000352993 AAMPQ13685 434 aa9.49□□□□□ -0.89
BRCA1-201ENST00000352993 ZNF692Q9BU19 519 aaPredicted RBP9.49□□□□□ -0.89
BRCA1-201ENST00000352993 PPP1R9BQ96SB3 815 aa9.49□□□□□ -0.89
BRCA1-201ENST00000352993 RBM42Q9BTD8 480 aaKnown RBP9.48□□□□□ -0.89
BRCA1-201ENST00000352993 SMC5Q8IY18 1101 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 TROQ12816 1431 aaPredicted RBP9.47□□□□□ -0.89
BRCA1-201ENST00000352993 PTPRMP28827 1452 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 GPATCH8Q9UKJ3 1502 aaKnown RBP9.47□□□□□ -0.89
BRCA1-201ENST00000352993 MORC1Q86VD1 984 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 MPNDQ8N594 471 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 PLXNC1O60486 1568 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 K7ELQ4 463 aaPredicted RBP9.47□□□□□ -0.89
BRCA1-201ENST00000352993 FOXD4L5Q5VV16 416 aaPredicted RBP9.47□□□□□ -0.89
BRCA1-201ENST00000352993 NGEFQ8N5V2 710 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 RNF214Q8ND24 703 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 FOXD4L4Q8WXT5 416 aaPredicted RBP9.47□□□□□ -0.89
BRCA1-201ENST00000352993 FAM135AQ9P2D6 1515 aa9.47□□□□□ -0.89
BRCA1-201ENST00000352993 C3P01024 1663 aa9.46□□□□□ -0.89
BRCA1-201ENST00000352993 BAG4O95429 457 aaKnown RBP9.46□□□□□ -0.89
BRCA1-201ENST00000352993 CSPP1Q1MSJ5 1256 aa9.46□□□□□ -0.89
BRCA1-201ENST00000352993 TPRNQ4KMQ1 711 aa9.46□□□□□ -0.89
BRCA1-201ENST00000352993 MTERF4Q7Z6M4 381 aaKnown RBP9.46□□□□□ -0.89
BRCA1-201ENST00000352993 IQSEC2Q5JU85 1478 aa9.46□□□□□ -0.9
BRCA1-201ENST00000352993 KLHL40Q2TBA0 621 aa9.46□□□□□ -0.9
BRCA1-201ENST00000352993 RUNDC1Q96C34 613 aa9.46□□□□□ -0.9
BRCA1-201ENST00000352993 DIP2CQ9Y2E4 1556 aa9.46□□□□□ -0.9
BRCA1-201ENST00000352993 NPM1P06748 294 aaKnown RBP eCLIP9.45□□□□□ -0.9
BRCA1-201ENST00000352993 ANKRD45Q5TZF3 282 aa9.45□□□□□ -0.9
BRCA1-201ENST00000352993 SMAP1Q8IYB5 467 aaPredicted RBP9.45□□□□□ -0.9
BRCA1-201ENST00000352993 TSR2Q969E8 191 aaKnown RBP9.45□□□□□ -0.9
BRCA1-201ENST00000352993 SNX21Q969T3 373 aa9.45□□□□□ -0.9
BRCA1-201ENST00000352993 ZFYVE16Q7Z3T8 1539 aa9.45□□□□□ -0.9
BRCA1-201ENST00000352993 ADGBQ8N7X0 1667 aa9.45□□□□□ -0.9
BRCA1-201ENST00000352993 PRPF40AO75400 957 aaKnown RBP9.45□□□□□ -0.9
BRCA1-201ENST00000352993 CD2BP2O95400 341 aaKnown RBP9.45□□□□□ -0.9
BRCA1-201ENST00000352993 GAS2L2Q8NHY3 880 aa9.45□□□□□ -0.9
BRCA1-201ENST00000352993 ABCA6Q8N139 1617 aa9.45□□□□□ -0.9
BRCA1-201ENST00000352993 DYNC1I1O14576 645 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms