RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 FAM135BQ49AJ0 1406 aa20.32■□□□□ 0.84
CXCL12-201ENST00000343575 POGKQ9P215 609 aa20.31■□□□□ 0.84
CXCL12-201ENST00000343575 AMOTL2Q9Y2J4 779 aa20.3■□□□□ 0.84
CXCL12-201ENST00000343575 CDCA8Q53HL2 280 aa20.29■□□□□ 0.84
CXCL12-201ENST00000343575 MINK1Q8N4C8 1332 aaPredicted RBP20.29■□□□□ 0.84
CXCL12-201ENST00000343575 MYOM1P52179 1685 aa20.29■□□□□ 0.84
CXCL12-201ENST00000343575 XRN1Q8IZH2 1706 aaKnown RBP20.29■□□□□ 0.84
CXCL12-201ENST00000343575 PIK3R4Q99570 1358 aa20.28■□□□□ 0.84
CXCL12-201ENST00000343575 EVC2Q86UK5 1308 aa20.26■□□□□ 0.83
CXCL12-201ENST00000343575 CHD2O14647 1828 aaKnown RBP20.26■□□□□ 0.83
CXCL12-201ENST00000343575 PER1O15534 1290 aaPredicted RBP20.25■□□□□ 0.83
CXCL12-201ENST00000343575 KCNA6P17658 529 aa20.25■□□□□ 0.83
CXCL12-201ENST00000343575 PTCH1Q13635 1447 aa20.25■□□□□ 0.83
CXCL12-201ENST00000343575 PUS7Q96PZ0 661 aaKnown RBP20.24■□□□□ 0.83
CXCL12-201ENST00000343575 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.24■□□□□ 0.83
CXCL12-201ENST00000343575 CABP2Q9NPB3 220 aa20.24■□□□□ 0.83
CXCL12-201ENST00000343575 PANK3Q9H999 370 aa20.23■□□□□ 0.83
CXCL12-201ENST00000343575 STRCQ7RTU9 1775 aa20.22■□□□□ 0.83
CXCL12-201ENST00000343575 CDK19Q9BWU1 502 aa20.21■□□□□ 0.83
CXCL12-201ENST00000343575 SLC12A5Q9H2X9 1139 aa20.2■□□□□ 0.82
CXCL12-201ENST00000343575 ANP32CO43423 234 aa20.18■□□□□ 0.82
CXCL12-201ENST00000343575 WASLO00401 505 aaPredicted RBP20.18■□□□□ 0.82
CXCL12-201ENST00000343575 SRPK2P78362 688 aaKnown RBP20.18■□□□□ 0.82
CXCL12-201ENST00000343575 ADGRB2O60241 1585 aa20.18■□□□□ 0.82
CXCL12-201ENST00000343575 PRKRIP1Q9H875 184 aaPredicted RBP20.16■□□□□ 0.82
CXCL12-201ENST00000343575 NWD1Q149M9 1564 aa20.16■□□□□ 0.82
CXCL12-201ENST00000343575 CARD14Q9BXL6 1004 aa20.16■□□□□ 0.82
CXCL12-201ENST00000343575 ATAD2Q6PL18 1390 aa20.14■□□□□ 0.81
CXCL12-201ENST00000343575 TMC1Q8TDI8 760 aa20.13■□□□□ 0.81
CXCL12-201ENST00000343575 PRR36Q9H6K5 1346 aa20.12■□□□□ 0.81
CXCL12-201ENST00000343575 STRCP1A6NGW2 1772 aa20.11■□□□□ 0.81
CXCL12-201ENST00000343575 RBM33Q96EV2 1170 aaKnown RBP20.11■□□□□ 0.81
CXCL12-201ENST00000343575 CD163L1Q9NR16 1453 aa20.11■□□□□ 0.81
CXCL12-201ENST00000343575 YTHDC1Q96MU7 727 aaKnown RBP20.11■□□□□ 0.81
CXCL12-201ENST00000343575 AMER1Q5JTC6 1135 aaPredicted RBP20.1■□□□□ 0.81
CXCL12-201ENST00000343575 ATP7BP35670 1465 aa20.1■□□□□ 0.81
CXCL12-201ENST00000343575 NINLQ9Y2I6 1382 aa20.09■□□□□ 0.81
CXCL12-201ENST00000343575 NUDT16Q96DE0 195 aaKnown RBP20.09■□□□□ 0.81
CXCL12-201ENST00000343575 CABP1Q9NZU7 370 aa20.09■□□□□ 0.81
CXCL12-201ENST00000343575 ANKRD36BQ8N2N9 1353 aa20.08■□□□□ 0.81
CXCL12-201ENST00000343575 CNGB1Q14028 1251 aaPredicted RBP20.08■□□□□ 0.81
CXCL12-201ENST00000343575 NALCNQ8IZF0 1738 aa20.08■□□□□ 0.8
CXCL12-201ENST00000343575 A0A1W2PP64 1363 aa20.07■□□□□ 0.8
CXCL12-201ENST00000343575 KNSTRNQ9Y448 316 aa20.07■□□□□ 0.8
CXCL12-201ENST00000343575 USP32Q8NFA0 1604 aa20.07■□□□□ 0.8
CXCL12-201ENST00000343575 CCER2I3L3R5 266 aa20.06■□□□□ 0.8
CXCL12-201ENST00000343575 NKTRP30414 1462 aaKnown RBP20.06■□□□□ 0.8
CXCL12-201ENST00000343575 CCDC184Q52MB2 194 aa20.05■□□□□ 0.8
CXCL12-201ENST00000343575 CCDC61Q9Y6R9 512 aa20.05■□□□□ 0.8
CXCL12-201ENST00000343575 PARD3Q8TEW0 1356 aa20.05■□□□□ 0.8
CXCL12-201ENST00000343575 CC2D1BQ5T0F9 858 aaKnown RBP20.05■□□□□ 0.8
CXCL12-201ENST00000343575 NSD3Q9BZ95 1437 aa20.04■□□□□ 0.8
CXCL12-201ENST00000343575 ADGRL3Q9HAR2 1447 aa20.04■□□□□ 0.8
CXCL12-201ENST00000343575 NUTM2FA1L443 756 aa20.04■□□□□ 0.8
CXCL12-201ENST00000343575 NPC1L1Q9UHC9 1359 aa20.04■□□□□ 0.8
CXCL12-201ENST00000343575 PPIP5K1Q6PFW1 1433 aa20.04■□□□□ 0.8
CXCL12-201ENST00000343575 TOPAZ1Q8N9V7 1692 aa20.03■□□□□ 0.8
CXCL12-201ENST00000343575 KTN1Q86UP2 1357 aaKnown RBP20.03■□□□□ 0.8
CXCL12-201ENST00000343575 PROSER2Q86WR7 435 aaPredicted RBP20.03■□□□□ 0.8
CXCL12-201ENST00000343575 CPSF1Q10570 1443 aaKnown RBP20.02■□□□□ 0.8
CXCL12-201ENST00000343575 CDC42BPGQ6DT37 1551 aa20.02■□□□□ 0.79
CXCL12-201ENST00000343575 FMN2Q9NZ56 1722 aa20.01■□□□□ 0.79
CXCL12-201ENST00000343575 RALBP1Q15311 655 aa20.01■□□□□ 0.79
CXCL12-201ENST00000343575 RGPD8O14715 1765 aaPredicted RBP20.01■□□□□ 0.79
CXCL12-201ENST00000343575 TERF2IPQ9NYB0 399 aa20.01■□□□□ 0.79
CXCL12-201ENST00000343575 ZNF335Q9H4Z2 1342 aaPredicted RBP19.99■□□□□ 0.79
CXCL12-201ENST00000343575 TMEM94Q12767 1356 aa19.99■□□□□ 0.79
CXCL12-201ENST00000343575 PLEKHG3A1L390 1219 aa19.99■□□□□ 0.79
CXCL12-201ENST00000343575 ANKARQ7Z5J8 1434 aa19.97■□□□□ 0.79
CXCL12-201ENST00000343575 HDGFL2Q7Z4V5 671 aaPredicted RBP19.96■□□□□ 0.79
CXCL12-201ENST00000343575 MYBBP1AQ9BQG0 1328 aaKnown RBP19.96■□□□□ 0.79
CXCL12-201ENST00000343575 AKAP12Q02952 1782 aa19.95■□□□□ 0.78
CXCL12-201ENST00000343575 XIRP1Q702N8 1843 aaKnown RBP19.95■□□□□ 0.78
CXCL12-201ENST00000343575 ACEP12821 1306 aa19.94■□□□□ 0.78
CXCL12-201ENST00000343575 CGNL1Q0VF96 1302 aa19.94■□□□□ 0.78
CXCL12-201ENST00000343575 NCOA3Q9Y6Q9 1424 aa19.94■□□□□ 0.78
CXCL12-201ENST00000343575 C19orf44Q9H6X5 657 aa19.94■□□□□ 0.78
CXCL12-201ENST00000343575 MON2Q7Z3U7 1717 aa19.93■□□□□ 0.78
CXCL12-201ENST00000343575 LRRC7Q96NW7 1537 aa19.93■□□□□ 0.78
CXCL12-201ENST00000343575 FYB1O15117 783 aa19.93■□□□□ 0.78
CXCL12-201ENST00000343575 C14orf37Q86TY3 774 aa19.93■□□□□ 0.78
CXCL12-201ENST00000343575 DMRT2Q9Y5R5 561 aa19.93■□□□□ 0.78
CXCL12-201ENST00000343575 ITSN1Q15811 1721 aa19.93■□□□□ 0.78
CXCL12-201ENST00000343575 PMFBP1Q8TBY8 1022 aa19.92■□□□□ 0.78
CXCL12-201ENST00000343575 POLR3AO14802 1390 aaPredicted RBP19.92■□□□□ 0.78
CXCL12-201ENST00000343575 EDC4Q6P2E9 1401 aaKnown RBP19.91■□□□□ 0.78
CXCL12-201ENST00000343575 PPP2R1AP30153 589 aa19.9■□□□□ 0.78
CXCL12-201ENST00000343575 ZNF692Q9BU19 519 aaPredicted RBP19.9■□□□□ 0.78
CXCL12-201ENST00000343575 MRS2Q9HD23 443 aa19.9■□□□□ 0.78
CXCL12-201ENST00000343575 SSH2Q76I76 1423 aa19.9■□□□□ 0.78
CXCL12-201ENST00000343575 NLRP13Q86W25 1043 aa19.89■□□□□ 0.77
CXCL12-201ENST00000343575 GGNBP2Q9H3C7 697 aa19.89■□□□□ 0.77
CXCL12-201ENST00000343575 USP6P35125 1406 aa19.89■□□□□ 0.77
CXCL12-201ENST00000343575 NSD2O96028 1365 aa19.89■□□□□ 0.77
CXCL12-201ENST00000343575 NRKQ7Z2Y5 1582 aa19.88■□□□□ 0.77
CXCL12-201ENST00000343575 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.88■□□□□ 0.77
CXCL12-201ENST00000343575 BRD4O60885 1362 aaPredicted RBP19.88■□□□□ 0.77
CXCL12-201ENST00000343575 DCCP43146 1447 aa19.87■□□□□ 0.77
CXCL12-201ENST00000343575 ORAI2Q96SN7 254 aa19.86■□□□□ 0.77
CXCL12-201ENST00000343575 MORC1Q86VD1 984 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms