RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 POLR3AO14802 1390 aaPredicted RBP23■■□□□ 1.27
DDX28-201ENST00000332395 SPATA31D1Q6ZQQ2 1576 aa22.99■■□□□ 1.27
DDX28-201ENST00000332395 MORC1Q86VD1 984 aa22.99■■□□□ 1.27
DDX28-201ENST00000332395 PTPRMP28827 1452 aa22.99■■□□□ 1.27
DDX28-201ENST00000332395 SAFB2Q14151 953 aaKnown RBP eCLIP22.99■■□□□ 1.27
DDX28-201ENST00000332395 CCDC146Q8IYE0 955 aa22.99■■□□□ 1.27
DDX28-201ENST00000332395 STAG3Q9UJ98 1225 aa22.99■■□□□ 1.27
DDX28-201ENST00000332395 ANKRD36BQ8N2N9 1353 aa22.98■■□□□ 1.27
DDX28-201ENST00000332395 CGNL1Q0VF96 1302 aa22.98■■□□□ 1.27
DDX28-201ENST00000332395 CABP2Q9NPB3 220 aa22.97■■□□□ 1.27
DDX28-201ENST00000332395 YTHDC2Q9H6S0 1430 aaKnown RBP22.97■■□□□ 1.27
DDX28-201ENST00000332395 ALKQ9UM73 1620 aa22.97■■□□□ 1.27
DDX28-201ENST00000332395 EXOC6Q8TAG9 804 aa22.96■■□□□ 1.27
DDX28-201ENST00000332395 GOLGA2Q08379 1002 aa22.96■■□□□ 1.27
DDX28-201ENST00000332395 MLECQ14165 292 aa22.95■■□□□ 1.26
DDX28-201ENST00000332395 DUSP27Q5VZP5 1158 aa22.94■■□□□ 1.26
DDX28-201ENST00000332395 A2ML1A8K2U0 1454 aa22.94■■□□□ 1.26
DDX28-201ENST00000332395 APAF1O14727 1248 aa22.93■■□□□ 1.26
DDX28-201ENST00000332395 NINLQ9Y2I6 1382 aa22.93■■□□□ 1.26
DDX28-201ENST00000332395 SHPRHQ149N8 1683 aa22.93■■□□□ 1.26
DDX28-201ENST00000332395 TNNT2P45379 298 aaPredicted RBP22.93■■□□□ 1.26
DDX28-201ENST00000332395 NSD2O96028 1365 aa22.92■■□□□ 1.26
DDX28-201ENST00000332395 PRAM1Q96QH2 718 aa22.92■■□□□ 1.26
DDX28-201ENST00000332395 SRPK2P78362 688 aaKnown RBP22.91■■□□□ 1.26
DDX28-201ENST00000332395 POGKQ9P215 609 aa22.9■■□□□ 1.26
DDX28-201ENST00000332395 PLIN1O60240 522 aa22.9■■□□□ 1.26
DDX28-201ENST00000332395 MSH5O43196 834 aa22.89■■□□□ 1.26
DDX28-201ENST00000332395 SLFN5Q08AF3 891 aa22.89■■□□□ 1.26
DDX28-201ENST00000332395 MINK1Q8N4C8 1332 aaPredicted RBP22.89■■□□□ 1.25
DDX28-201ENST00000332395 A0A1W2PP64 1363 aa22.88■■□□□ 1.25
DDX28-201ENST00000332395 ATAD2Q6PL18 1390 aa22.88■■□□□ 1.25
DDX28-201ENST00000332395 RIMS2Q9UQ26 1411 aa22.88■■□□□ 1.25
DDX28-201ENST00000332395 NGEFQ8N5V2 710 aa22.88■■□□□ 1.25
DDX28-201ENST00000332395 ABCC11Q96J66 1382 aa22.86■■□□□ 1.25
DDX28-201ENST00000332395 FANCIQ9NVI1 1328 aa22.86■■□□□ 1.25
DDX28-201ENST00000332395 TRMT2AQ8IZ69 625 aaKnown RBP22.86■■□□□ 1.25
DDX28-201ENST00000332395 MTHFSP49914 203 aa22.86■■□□□ 1.25
DDX28-201ENST00000332395 SETD1AO15047 1707 aaKnown RBP22.85■■□□□ 1.25
DDX28-201ENST00000332395 ZMYM3Q14202 1370 aa22.84■■□□□ 1.25
DDX28-201ENST00000332395 ESF1Q9H501 851 aaKnown RBP22.83■■□□□ 1.25
DDX28-201ENST00000332395 DLC1Q96QB1 1528 aa22.83■■□□□ 1.25
DDX28-201ENST00000332395 CFAP53Q96M91 514 aa22.83■■□□□ 1.24
DDX28-201ENST00000332395 SPINK5Q9NQ38 1064 aaPredicted RBP22.83■■□□□ 1.24
DDX28-201ENST00000332395 CRBNQ96SW2 442 aa22.82■■□□□ 1.24
DDX28-201ENST00000332395 TERF2IPQ9NYB0 399 aa22.82■■□□□ 1.24
DDX28-201ENST00000332395 NKTRP30414 1462 aaKnown RBP22.81■■□□□ 1.24
DDX28-201ENST00000332395 CD163L1Q9NR16 1453 aa22.81■■□□□ 1.24
DDX28-201ENST00000332395 E9PSI1 815 aa22.81■■□□□ 1.24
DDX28-201ENST00000332395 CDK19Q9BWU1 502 aa22.8■■□□□ 1.24
DDX28-201ENST00000332395 RUNDC1Q96C34 613 aa22.79■■□□□ 1.24
DDX28-201ENST00000332395 NRXN3Q9Y4C0 1643 aa22.79■■□□□ 1.24
DDX28-201ENST00000332395 IQSEC2Q5JU85 1478 aa22.78■■□□□ 1.24
DDX28-201ENST00000332395 C20orf194Q5TEA3 1177 aa22.78■■□□□ 1.24
DDX28-201ENST00000332395 DMRT2Q9Y5R5 561 aa22.78■■□□□ 1.24
DDX28-201ENST00000332395 WWC1Q8IX03 1113 aa22.77■■□□□ 1.24
DDX28-201ENST00000332395 ANKRD26Q9UPS8 1709 aa22.77■■□□□ 1.24
DDX28-201ENST00000332395 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.76■■□□□ 1.23
DDX28-201ENST00000332395 MED14O60244 1454 aa22.76■■□□□ 1.23
DDX28-201ENST00000332395 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.76■■□□□ 1.23
DDX28-201ENST00000332395 GGNBP2Q9H3C7 697 aa22.76■■□□□ 1.23
DDX28-201ENST00000332395 NLRP1Q9C000 1473 aa22.75■■□□□ 1.23
DDX28-201ENST00000332395 WAPLQ7Z5K2 1190 aa22.75■■□□□ 1.23
DDX28-201ENST00000332395 HDGFL2Q7Z4V5 671 aaPredicted RBP22.74■■□□□ 1.23
DDX28-201ENST00000332395 FYB1O15117 783 aa22.74■■□□□ 1.23
DDX28-201ENST00000332395 TCP11L2Q8N4U5 519 aa22.74■■□□□ 1.23
DDX28-201ENST00000332395 TNRQ92752 1358 aa22.73■■□□□ 1.23
DDX28-201ENST00000332395 CABP1Q9NZU7 370 aa22.73■■□□□ 1.23
DDX28-201ENST00000332395 NEUROD2Q15784 382 aa22.72■■□□□ 1.23
DDX28-201ENST00000332395 RRP7AQ9Y3A4 280 aaKnown RBP22.72■■□□□ 1.23
DDX28-201ENST00000332395 METP08581 1390 aa22.71■■□□□ 1.23
DDX28-201ENST00000332395 PHF23Q9BUL5 403 aaPredicted RBP22.71■■□□□ 1.23
DDX28-201ENST00000332395 U2AF1L5P0DN76 240 aaPredicted RBP22.7■■□□□ 1.22
DDX28-201ENST00000332395 U2AF1Q01081 240 aaKnown RBP eCLIP22.7■■□□□ 1.22
DDX28-201ENST00000332395 KIF20BQ96Q89 1820 aa22.7■■□□□ 1.22
DDX28-201ENST00000332395 HDGFP51858 240 aaKnown RBP22.69■■□□□ 1.22
DDX28-201ENST00000332395 COL3A1P02461 1466 aaPredicted RBP22.69■■□□□ 1.22
DDX28-201ENST00000332395 ATP7BP35670 1465 aa22.69■■□□□ 1.22
DDX28-201ENST00000332395 UBR1Q8IWV7 1749 aa22.68■■□□□ 1.22
DDX28-201ENST00000332395 CCDC27Q2M243 656 aa22.67■■□□□ 1.22
DDX28-201ENST00000332395 ADGRB2O60241 1585 aa22.67■■□□□ 1.22
DDX28-201ENST00000332395 KNDC1Q76NI1 1749 aa22.67■■□□□ 1.22
DDX28-201ENST00000332395 BCAR3O75815 825 aa22.66■■□□□ 1.22
DDX28-201ENST00000332395 WDR63Q8IWG1 891 aa22.66■■□□□ 1.22
DDX28-201ENST00000332395 TCERG1O14776 1098 aaKnown RBP22.65■■□□□ 1.22
DDX28-201ENST00000332395 NCBP3Q53F19 620 aaKnown RBP22.65■■□□□ 1.22
DDX28-201ENST00000332395 ERICH6Q7L0X2 663 aa22.65■■□□□ 1.22
DDX28-201ENST00000332395 TMEM2Q9UHN6 1383 aa22.65■■□□□ 1.22
DDX28-201ENST00000332395 TECPR2O15040 1411 aa22.64■■□□□ 1.21
DDX28-201ENST00000332395 WASLO00401 505 aaPredicted RBP22.63■■□□□ 1.21
DDX28-201ENST00000332395 TXNDC2Q86VQ3 553 aa22.63■■□□□ 1.21
DDX28-201ENST00000332395 FAM135BQ49AJ0 1406 aa22.63■■□□□ 1.21
DDX28-201ENST00000332395 CPS1P31327 1500 aa22.62■■□□□ 1.21
DDX28-201ENST00000332395 U2SURPO15042 1029 aaKnown RBP22.62■■□□□ 1.21
DDX28-201ENST00000332395 SIRT1Q96EB6 747 aa22.61■■□□□ 1.21
DDX28-201ENST00000332395 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.6■■□□□ 1.21
DDX28-201ENST00000332395 KDM2BQ8NHM5 1336 aa22.6■■□□□ 1.21
DDX28-201ENST00000332395 PNPLA6Q8IY17 1366 aa22.6■■□□□ 1.21
DDX28-201ENST00000332395 PPIP5K1Q6PFW1 1433 aa22.6■■□□□ 1.21
DDX28-201ENST00000332395 PLEKHF1Q96S99 279 aa22.59■■□□□ 1.21
DDX28-201ENST00000332395 CPSF1Q10570 1443 aaKnown RBP22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms