RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 ABCC11Q96J66 1382 aa22.81■■□□□ 1.24
DDX41-201ENST00000330503 NSD3Q9BZ95 1437 aa22.81■■□□□ 1.24
DDX41-201ENST00000330503 METP08581 1390 aa22.8■■□□□ 1.24
DDX41-201ENST00000330503 INSRP06213 1382 aa22.78■■□□□ 1.24
DDX41-201ENST00000330503 WAPLQ7Z5K2 1190 aa22.78■■□□□ 1.24
DDX41-201ENST00000330503 SRPK2P78362 688 aaKnown RBP22.77■■□□□ 1.24
DDX41-201ENST00000330503 PLEKHH1Q9ULM0 1364 aa22.77■■□□□ 1.24
DDX41-201ENST00000330503 LTKP29376 864 aa22.76■■□□□ 1.23
DDX41-201ENST00000330503 ANKRD36BQ8N2N9 1353 aa22.76■■□□□ 1.23
DDX41-201ENST00000330503 CDK19Q9BWU1 502 aa22.75■■□□□ 1.23
DDX41-201ENST00000330503 PLPPR3Q6T4P5 718 aa22.75■■□□□ 1.23
DDX41-201ENST00000330503 BLMP54132 1417 aaPredicted RBP22.74■■□□□ 1.23
DDX41-201ENST00000330503 SMG6Q86US8 1419 aaKnown RBP22.74■■□□□ 1.23
DDX41-201ENST00000330503 USP32Q8NFA0 1604 aa22.74■■□□□ 1.23
DDX41-201ENST00000330503 ADAMTS8Q9UP79 889 aa22.73■■□□□ 1.23
DDX41-201ENST00000330503 NEFLP07196 543 aa22.73■■□□□ 1.23
DDX41-201ENST00000330503 NINLQ9Y2I6 1382 aa22.73■■□□□ 1.23
DDX41-201ENST00000330503 ATAD2Q6PL18 1390 aa22.72■■□□□ 1.23
DDX41-201ENST00000330503 ADAMTS13Q76LX8 1427 aa22.72■■□□□ 1.23
DDX41-201ENST00000330503 SIRT1Q96EB6 747 aa22.72■■□□□ 1.23
DDX41-201ENST00000330503 TXNDC2Q86VQ3 553 aa22.71■■□□□ 1.23
DDX41-201ENST00000330503 BCANQ96GW7 911 aa22.71■■□□□ 1.23
DDX41-201ENST00000330503 PLEKHG1Q9ULL1 1385 aa22.71■■□□□ 1.23
DDX41-201ENST00000330503 MORC1Q86VD1 984 aa22.7■■□□□ 1.22
DDX41-201ENST00000330503 CGNL1Q0VF96 1302 aa22.7■■□□□ 1.22
DDX41-201ENST00000330503 NUDCQ9Y266 331 aa22.69■■□□□ 1.22
DDX41-201ENST00000330503 ARHGAP23Q9P227 1491 aa22.69■■□□□ 1.22
DDX41-201ENST00000330503 A0A1W2PP64 1363 aa22.69■■□□□ 1.22
DDX41-201ENST00000330503 TECPR2O15040 1411 aa22.69■■□□□ 1.22
DDX41-201ENST00000330503 CD163L1Q9NR16 1453 aa22.68■■□□□ 1.22
DDX41-201ENST00000330503 SLIT1O75093 1534 aa22.68■■□□□ 1.22
DDX41-201ENST00000330503 KNDC1Q76NI1 1749 aa22.68■■□□□ 1.22
DDX41-201ENST00000330503 FAM135BQ49AJ0 1406 aa22.67■■□□□ 1.22
DDX41-201ENST00000330503 MED14O60244 1454 aa22.66■■□□□ 1.22
DDX41-201ENST00000330503 WDR43Q15061 677 aaKnown RBP eCLIP22.66■■□□□ 1.22
DDX41-201ENST00000330503 SALL2Q9Y467 1007 aaPredicted RBP22.66■■□□□ 1.22
DDX41-201ENST00000330503 EID1Q9Y6B2 187 aa22.65■■□□□ 1.22
DDX41-201ENST00000330503 THEMISQ8N1K5 641 aaPredicted RBP22.64■■□□□ 1.22
DDX41-201ENST00000330503 TERF2IPQ9NYB0 399 aa22.64■■□□□ 1.22
DDX41-201ENST00000330503 CABP1Q9NZU7 370 aa22.64■■□□□ 1.22
DDX41-201ENST00000330503 CPS1P31327 1500 aa22.64■■□□□ 1.21
DDX41-201ENST00000330503 NSD2O96028 1365 aa22.64■■□□□ 1.21
DDX41-201ENST00000330503 POLR3AO14802 1390 aaPredicted RBP22.63■■□□□ 1.21
DDX41-201ENST00000330503 WASLO00401 505 aaPredicted RBP22.63■■□□□ 1.21
DDX41-201ENST00000330503 TNNT2P45379 298 aaPredicted RBP22.63■■□□□ 1.21
DDX41-201ENST00000330503 ROBO2Q9HCK4 1378 aa22.62■■□□□ 1.21
DDX41-201ENST00000330503 RIMS1Q86UR5 1692 aaKnown RBP22.61■■□□□ 1.21
DDX41-201ENST00000330503 SLC26A8Q96RN1 970 aa22.61■■□□□ 1.21
DDX41-201ENST00000330503 IRX6P78412 446 aaPredicted RBP22.6■■□□□ 1.21
DDX41-201ENST00000330503 PDE3BQ13370 1112 aa22.6■■□□□ 1.21
DDX41-201ENST00000330503 PTPRUQ92729 1446 aa22.59■■□□□ 1.21
DDX41-201ENST00000330503 HDGFL2Q7Z4V5 671 aaPredicted RBP22.59■■□□□ 1.21
DDX41-201ENST00000330503 FYB1O15117 783 aa22.58■■□□□ 1.2
DDX41-201ENST00000330503 TBX22Q9Y458 520 aa22.58■■□□□ 1.2
DDX41-201ENST00000330503 ADAMTSL3P82987 1691 aa22.58■■□□□ 1.2
DDX41-201ENST00000330503 MTHFSP49914 203 aa22.57■■□□□ 1.2
DDX41-201ENST00000330503 CDCA7LQ96GN5 454 aa22.56■■□□□ 1.2
DDX41-201ENST00000330503 GGNBP2Q9H3C7 697 aa22.56■■□□□ 1.2
DDX41-201ENST00000330503 NUDT16Q96DE0 195 aaKnown RBP22.55■■□□□ 1.2
DDX41-201ENST00000330503 RNF123Q5XPI4 1314 aa22.55■■□□□ 1.2
DDX41-201ENST00000330503 ATP7BP35670 1465 aa22.55■■□□□ 1.2
DDX41-201ENST00000330503 CEP170BQ9Y4F5 1589 aaPredicted RBP22.54■■□□□ 1.2
DDX41-201ENST00000330503 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.53■■□□□ 1.2
DDX41-201ENST00000330503 CCDC146Q8IYE0 955 aa22.53■■□□□ 1.2
DDX41-201ENST00000330503 SHPRHQ149N8 1683 aa22.53■■□□□ 1.2
DDX41-201ENST00000330503 AMOTL2Q9Y2J4 779 aa22.52■■□□□ 1.2
DDX41-201ENST00000330503 CPSF1Q10570 1443 aaKnown RBP22.52■■□□□ 1.19
DDX41-201ENST00000330503 PPIP5K1Q6PFW1 1433 aa22.52■■□□□ 1.19
DDX41-201ENST00000330503 NCKAP5LQ9HCH0 1330 aa22.51■■□□□ 1.19
DDX41-201ENST00000330503 ANKRD26Q9UPS8 1709 aa22.51■■□□□ 1.19
DDX41-201ENST00000330503 ERICH6BQ5W0A0 696 aa22.51■■□□□ 1.19
DDX41-201ENST00000330503 ZNF521Q96K83 1311 aa22.5■■□□□ 1.19
DDX41-201ENST00000330503 CCDC61Q9Y6R9 512 aa22.49■■□□□ 1.19
DDX41-201ENST00000330503 PRR36Q9H6K5 1346 aa22.49■■□□□ 1.19
DDX41-201ENST00000330503 ADGRB2O60241 1585 aa22.48■■□□□ 1.19
DDX41-201ENST00000330503 DIP2AQ14689 1571 aa22.48■■□□□ 1.19
DDX41-201ENST00000330503 APAF1O14727 1248 aa22.48■■□□□ 1.19
DDX41-201ENST00000330503 CFAP53Q96M91 514 aa22.48■■□□□ 1.19
DDX41-201ENST00000330503 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.46■■□□□ 1.19
DDX41-201ENST00000330503 KIF20BQ96Q89 1820 aa22.46■■□□□ 1.19
DDX41-201ENST00000330503 CDC42BPGQ6DT37 1551 aa22.44■■□□□ 1.18
DDX41-201ENST00000330503 PTCH1Q13635 1447 aa22.43■■□□□ 1.18
DDX41-201ENST00000330503 EDC4Q6P2E9 1401 aaKnown RBP22.43■■□□□ 1.18
DDX41-201ENST00000330503 ZNF142P52746 1687 aaPredicted RBP22.43■■□□□ 1.18
DDX41-201ENST00000330503 RCAN3Q9UKA8 241 aa22.43■■□□□ 1.18
DDX41-201ENST00000330503 SETD1BQ9UPS6 1966 aaKnown RBP22.42■■□□□ 1.18
DDX41-201ENST00000330503 ANKLE2Q86XL3 938 aa22.42■■□□□ 1.18
DDX41-201ENST00000330503 XRN1Q8IZH2 1706 aaKnown RBP22.41■■□□□ 1.18
DDX41-201ENST00000330503 AKAP12Q02952 1782 aa22.4■■□□□ 1.18
DDX41-201ENST00000330503 COL3A1P02461 1466 aaPredicted RBP22.4■■□□□ 1.18
DDX41-201ENST00000330503 GOLGA2Q08379 1002 aa22.4■■□□□ 1.18
DDX41-201ENST00000330503 RUNDC1Q96C34 613 aa22.4■■□□□ 1.18
DDX41-201ENST00000330503 ZNF692Q9BU19 519 aaPredicted RBP22.4■■□□□ 1.18
DDX41-201ENST00000330503 PPP4R2Q9NY27 417 aa22.4■■□□□ 1.18
DDX41-201ENST00000330503 MON2Q7Z3U7 1717 aa22.4■■□□□ 1.18
DDX41-201ENST00000330503 PIK3R4Q99570 1358 aa22.39■■□□□ 1.18
DDX41-201ENST00000330503 NGEFQ8N5V2 710 aa22.39■■□□□ 1.18
DDX41-201ENST00000330503 PLEKHG3A1L390 1219 aa22.39■■□□□ 1.17
DDX41-201ENST00000330503 DUSP27Q5VZP5 1158 aa22.39■■□□□ 1.17
DDX41-201ENST00000330503 NME9Q86XW9 330 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms