RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 NISCHQ9Y2I1 1504 aa37.76■■■■□ 3.64
DDX41-201ENST00000330503 CCDC180Q9P1Z9 1646 aa32.67■■■□□ 2.82
DDX41-201ENST00000330503 ZCCHC6Q5VYS8 1495 aaKnown RBP31.76■■■□□ 2.67
DDX41-201ENST00000330503 DCAF8L2P0C7V8 631 aa31.19■■■□□ 2.58
DDX41-201ENST00000330503 DCAF1Q9Y4B6 1507 aa31.15■■■□□ 2.58
DDX41-201ENST00000330503 SHROOM4Q9ULL8 1493 aa31.12■■■□□ 2.57
DDX41-201ENST00000330503 ABCC9O60706 1549 aa30.77■■■□□ 2.52
DDX41-201ENST00000330503 MYO15BQ96JP2 1530 aa30.65■■■□□ 2.5
DDX41-201ENST00000330503 NACADO15069 1562 aa30.4■■■□□ 2.46
DDX41-201ENST00000330503 SCRIBQ14160 1630 aa30.2■■■□□ 2.42
DDX41-201ENST00000330503 SUPT5HO00267 1087 aaKnown RBP30.1■■■□□ 2.41
DDX41-201ENST00000330503 RB1CC1Q8TDY2 1594 aa30.06■■■□□ 2.4
DDX41-201ENST00000330503 UNC13AQ9UPW8 1703 aa29.53■■■□□ 2.32
DDX41-201ENST00000330503 RSF1Q96T23 1441 aaPredicted RBP29.46■■■□□ 2.31
DDX41-201ENST00000330503 CECR2Q9BXF3 1484 aa29.4■■■□□ 2.3
DDX41-201ENST00000330503 BICRAQ9NZM4 1560 aa29.24■■■□□ 2.27
DDX41-201ENST00000330503 MROH2BQ7Z745 1585 aa29.23■■■□□ 2.27
DDX41-201ENST00000330503 PABPN1Q86U42 306 aaKnown RBP eCLIP29.16■■■□□ 2.263e-7■■■■□ 23.8
DDX41-201ENST00000330503 BAZ1AQ9NRL2 1556 aaPredicted RBP29.07■■■□□ 2.24
DDX41-201ENST00000330503 WIZO95785 1651 aa29■■■□□ 2.23
DDX41-201ENST00000330503 CHIC1Q5VXU3 224 aa28.99■■■□□ 2.23
DDX41-201ENST00000330503 SMARCA4P51532 1647 aa28.94■■■□□ 2.22
DDX41-201ENST00000330503 TOP2AP11388 1531 aaKnown RBP28.63■■■□□ 2.17
DDX41-201ENST00000330503 PEG3Q9GZU2 1588 aa28.55■■■□□ 2.16
DDX41-201ENST00000330503 CCDC88BA6NC98 1476 aa28.43■■■□□ 2.14
DDX41-201ENST00000330503 ATAD2BQ9ULI0 1458 aa28.42■■■□□ 2.14
DDX41-201ENST00000330503 SMARCA2P51531 1590 aa28.42■■■□□ 2.14
DDX41-201ENST00000330503 EIF4G1Q04637 1599 aaKnown RBP28.3■■■□□ 2.12
DDX41-201ENST00000330503 BAZ1BQ9UIG0 1483 aaKnown RBP28.24■■■□□ 2.11
DDX41-201ENST00000330503 TRIM41Q8WV44 630 aa28.23■■■□□ 2.11
DDX41-201ENST00000330503 NCAPD3P42695 1498 aa28.11■■■□□ 2.09
DDX41-201ENST00000330503 HMGXB3Q12766 1538 aa28.03■■■□□ 2.08
DDX41-201ENST00000330503 LOC105371045A0A1W2PR82 267 aa27.95■■■□□ 2.07
DDX41-201ENST00000330503 ABCC8Q09428 1581 aa27.93■■■□□ 2.06
DDX41-201ENST00000330503 CC2D2AQ9P2K1 1620 aa27.82■■■□□ 2.04
DDX41-201ENST00000330503 FAM9AQ8IZU1 332 aaPredicted RBP27.8■■■□□ 2.04
DDX41-201ENST00000330503 WRNQ14191 1432 aaPredicted RBP eCLIP27.66■■■□□ 2.02
DDX41-201ENST00000330503 CFTRP13569 1480 aa27.57■■■□□ 2
DDX41-201ENST00000330503 SYNJ1O43426 1573 aa27.57■■■□□ 2
DDX41-201ENST00000330503 SOGA1O94964 1423 aa27.5■■□□□ 1.99
DDX41-201ENST00000330503 EHMT2Q96KQ7 1210 aa27.43■■□□□ 1.98
DDX41-201ENST00000330503 CADPSQ9ULU8 1353 aa27.42■■□□□ 1.98
DDX41-201ENST00000330503 RUSC2Q8N2Y8 1516 aa27.41■■□□□ 1.98
DDX41-201ENST00000330503 TOP2BQ02880 1626 aa27.39■■□□□ 1.98
DDX41-201ENST00000330503 EEA1Q15075 1411 aa27.37■■□□□ 1.97
DDX41-201ENST00000330503 PRDM2Q13029 1718 aa27.35■■□□□ 1.97
DDX41-201ENST00000330503 BIVM-ERCC5R4GMW8 1640 aa27.34■■□□□ 1.97
DDX41-201ENST00000330503 CSRNP3Q8WYN3 585 aa27.31■■□□□ 1.96
DDX41-201ENST00000330503 CUX1P39880 1505 aa27.29■■□□□ 1.96
DDX41-201ENST00000330503 DNAJC5BQ9UF47 199 aa27.23■■□□□ 1.95
DDX41-201ENST00000330503 NESP48681 1621 aa27.14■■□□□ 1.94
DDX41-201ENST00000330503 FANCD2Q9BXW9 1451 aa27.11■■□□□ 1.93
DDX41-201ENST00000330503 TNIKQ9UKE5 1360 aa27.06■■□□□ 1.92
DDX41-201ENST00000330503 GOLGA3Q08378 1498 aa27.04■■□□□ 1.92
DDX41-201ENST00000330503 LAMC3Q9Y6N6 1575 aa27.04■■□□□ 1.92
DDX41-201ENST00000330503 KIF21BO75037 1637 aa27.02■■□□□ 1.92
DDX41-201ENST00000330503 CEP164Q9UPV0 1460 aa27.01■■□□□ 1.91
DDX41-201ENST00000330503 UBTFP17480 764 aaKnown RBP26.99■■□□□ 1.91
DDX41-201ENST00000330503 CEP162Q5TB80 1403 aa26.94■■□□□ 1.9
DDX41-201ENST00000330503 PCGF6Q9BYE7 350 aa26.93■■□□□ 1.9
DDX41-201ENST00000330503 FGD5Q6ZNL6 1462 aa26.92■■□□□ 1.9
DDX41-201ENST00000330503 KIF27Q86VH2 1401 aa26.92■■□□□ 1.9
DDX41-201ENST00000330503 RAPGEF2Q9Y4G8 1499 aa26.9■■□□□ 1.9
DDX41-201ENST00000330503 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
DDX41-201ENST00000330503 TOPBP1Q92547 1522 aa26.86■■□□□ 1.89
DDX41-201ENST00000330503 PRXQ9BXM0 1461 aa26.86■■□□□ 1.89
DDX41-201ENST00000330503 PDS5BQ9NTI5 1447 aa26.85■■□□□ 1.89
DDX41-201ENST00000330503 CUX2O14529 1486 aa26.81■■□□□ 1.88
DDX41-201ENST00000330503 TRIM26Q12899 539 aaPredicted RBP26.8■■□□□ 1.88
DDX41-201ENST00000330503 URB2Q14146 1524 aaKnown RBP26.79■■□□□ 1.88
DDX41-201ENST00000330503 ERICH3Q5RHP9 1530 aa26.78■■□□□ 1.88
DDX41-201ENST00000330503 POLA1P09884 1462 aaPredicted RBP26.76■■□□□ 1.87
DDX41-201ENST00000330503 KIF21AQ7Z4S6 1674 aa26.74■■□□□ 1.87
DDX41-201ENST00000330503 IGF1RP08069 1367 aa26.74■■□□□ 1.87
DDX41-201ENST00000330503 RAD54L2Q9Y4B4 1467 aa26.73■■□□□ 1.87
DDX41-201ENST00000330503 ABCA10Q8WWZ4 1543 aa26.67■■□□□ 1.86
DDX41-201ENST00000330503 CLIP1P30622 1438 aa26.65■■□□□ 1.86
DDX41-201ENST00000330503 PPARGC1BQ86YN6 1023 aaKnown RBP26.62■■□□□ 1.85
DDX41-201ENST00000330503 CARMIL1Q5VZK9 1371 aa26.57■■□□□ 1.84
DDX41-201ENST00000330503 WDR97A6NE52 1622 aa26.53■■□□□ 1.84
DDX41-201ENST00000330503 RANGAP1P46060 587 aaPredicted RBP26.52■■□□□ 1.84
DDX41-201ENST00000330503 MRC2Q9UBG0 1479 aa26.49■■□□□ 1.83
DDX41-201ENST00000330503 VPS8Q8N3P4 1428 aa26.45■■□□□ 1.82
DDX41-201ENST00000330503 TDRD9Q8NDG6 1382 aaKnown RBP26.44■■□□□ 1.82
DDX41-201ENST00000330503 TARBP1Q13395 1621 aaKnown RBP26.43■■□□□ 1.82
DDX41-201ENST00000330503 ABCA5Q8WWZ7 1642 aa26.42■■□□□ 1.82
DDX41-201ENST00000330503 HRCP23327 699 aa26.39■■□□□ 1.81
DDX41-201ENST00000330503 ARAP1Q96P48 1450 aa26.38■■□□□ 1.81
DDX41-201ENST00000330503 GAPVD1Q14C86 1478 aa26.37■■□□□ 1.81
DDX41-201ENST00000330503 CUL7Q14999 1698 aa26.37■■□□□ 1.81
DDX41-201ENST00000330503 WDR62O43379 1518 aa26.34■■□□□ 1.81
DDX41-201ENST00000330503 ARHGAP35Q9NRY4 1499 aa26.32■■□□□ 1.8
DDX41-201ENST00000330503 TTBK1Q5TCY1 1321 aaPredicted RBP26.3■■□□□ 1.8
DDX41-201ENST00000330503 ERCC6Q03468 1493 aa26.28■■□□□ 1.8
DDX41-201ENST00000330503 AQRO60306 1485 aaKnown RBP eCLIP26.22■■□□□ 1.797e-8■■■■■ 75.9
DDX41-201ENST00000330503 IFT140Q96RY7 1462 aa26.21■■□□□ 1.79
DDX41-201ENST00000330503 THOC2Q8NI27 1593 aaKnown RBP26.2■■□□□ 1.78
DDX41-201ENST00000330503 APLP2Q06481 763 aa26.18■■□□□ 1.78
DDX41-201ENST00000330503 PBRM1Q86U86 1689 aa26.16■■□□□ 1.78
DDX41-201ENST00000330503 ZNF608Q9ULD9 1512 aaPredicted RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms