RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 SBNO2Q9Y2G9 1366 aa22.58■■□□□ 1.21
COL9A1-201ENST00000320755 ADGRB3O60242 1522 aa22.58■■□□□ 1.2
COL9A1-201ENST00000320755 VGFO15240 615 aaPredicted RBP22.58■■□□□ 1.2
COL9A1-201ENST00000320755 CGNL1Q0VF96 1302 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 IDI1Q13907 227 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 RUNDC1Q96C34 613 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 NEURL4Q96JN8 1562 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 U2AF1L5P0DN76 240 aaPredicted RBP22.56■■□□□ 1.2
COL9A1-201ENST00000320755 U2AF1Q01081 240 aaKnown RBP eCLIP22.56■■□□□ 1.2
COL9A1-201ENST00000320755 EVC2Q86UK5 1308 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 LMTK2Q8IWU2 1503 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 IFT172Q9UG01 1749 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 IGHDP01880 384 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 SRPK2P78362 688 aaKnown RBP22.55■■□□□ 1.2
COL9A1-201ENST00000320755 CFAP53Q96M91 514 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 RPGRIP1LQ68CZ1 1315 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 NEFMP07197 916 aa22.54■■□□□ 1.2
COL9A1-201ENST00000320755 FRMPD1Q5SYB0 1578 aa22.54■■□□□ 1.2
COL9A1-201ENST00000320755 FAM161AQ3B820 660 aa22.53■■□□□ 1.2
COL9A1-201ENST00000320755 MLH3Q9UHC1 1453 aa22.53■■□□□ 1.2
COL9A1-201ENST00000320755 CLUAP1Q96AJ1 413 aa22.52■■□□□ 1.2
COL9A1-201ENST00000320755 DAXXQ9UER7 740 aaPredicted RBP22.52■■□□□ 1.2
COL9A1-201ENST00000320755 TNNQ9UQP3 1299 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 C8orf34Q49A92 452 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 NGEFQ8N5V2 710 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 GGNBP2Q9H3C7 697 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 MINK1Q8N4C8 1332 aaPredicted RBP22.5■■□□□ 1.19
COL9A1-201ENST00000320755 U2SURPO15042 1029 aaKnown RBP22.5■■□□□ 1.19
COL9A1-201ENST00000320755 ABCC3O15438 1527 aa22.5■■□□□ 1.19
COL9A1-201ENST00000320755 QRICH2Q9H0J4 1663 aa22.5■■□□□ 1.19
COL9A1-201ENST00000320755 ADGRB1O14514 1584 aa22.5■■□□□ 1.19
COL9A1-201ENST00000320755 DDRGK1Q96HY6 314 aa22.49■■□□□ 1.19
COL9A1-201ENST00000320755 HECW2Q9P2P5 1572 aa22.49■■□□□ 1.19
COL9A1-201ENST00000320755 SETBP1Q9Y6X0 1596 aa22.48■■□□□ 1.19
COL9A1-201ENST00000320755 PPLO60437 1756 aa22.48■■□□□ 1.19
COL9A1-201ENST00000320755 RARSP54136 660 aaKnown RBP22.47■■□□□ 1.19
COL9A1-201ENST00000320755 PDE3AQ14432 1141 aa22.47■■□□□ 1.19
COL9A1-201ENST00000320755 POGKQ9P215 609 aa22.46■■□□□ 1.19
COL9A1-201ENST00000320755 MYO3AQ8NEV4 1616 aa22.46■■□□□ 1.19
COL9A1-201ENST00000320755 FBXO31Q5XUX0 539 aaPredicted RBP22.45■■□□□ 1.18
COL9A1-201ENST00000320755 RLBP1P12271 317 aa22.44■■□□□ 1.18
COL9A1-201ENST00000320755 STAG3Q9UJ98 1225 aa22.44■■□□□ 1.18
COL9A1-201ENST00000320755 PRAM1Q96QH2 718 aa22.44■■□□□ 1.18
COL9A1-201ENST00000320755 TSR2Q969E8 191 aaKnown RBP22.42■■□□□ 1.18
COL9A1-201ENST00000320755 ANKRD36BQ8N2N9 1353 aa22.42■■□□□ 1.18
COL9A1-201ENST00000320755 CYB5RLQ6IPT4 315 aa22.42■■□□□ 1.18
COL9A1-201ENST00000320755 YEATS2Q9ULM3 1422 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 WDR63Q8IWG1 891 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 SIGLEC1Q9BZZ2 1709 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 GLI2P10070 1586 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 PPM1GO15355 546 aaPredicted RBP22.4■■□□□ 1.18
COL9A1-201ENST00000320755 SLC52A1Q9NWF4 448 aa22.39■■□□□ 1.18
COL9A1-201ENST00000320755 TULP4Q9NRJ4 1543 aa22.39■■□□□ 1.17
COL9A1-201ENST00000320755 CFAP74Q9C0B2 1584 aa22.39■■□□□ 1.17
COL9A1-201ENST00000320755 A0A1W2PP64 1363 aa22.39■■□□□ 1.17
COL9A1-201ENST00000320755 CAMSAP1Q5T5Y3 1602 aa22.38■■□□□ 1.17
COL9A1-201ENST00000320755 PCDHB15Q9Y5E8 787 aa22.38■■□□□ 1.17
COL9A1-201ENST00000320755 SHPRHQ149N8 1683 aa22.38■■□□□ 1.17
COL9A1-201ENST00000320755 MYH16Q9H6N6 1097 aa22.37■■□□□ 1.17
COL9A1-201ENST00000320755 PHF23Q9BUL5 403 aaPredicted RBP22.37■■□□□ 1.17
COL9A1-201ENST00000320755 FBLN1P23142 703 aa22.37■■□□□ 1.17
COL9A1-201ENST00000320755 ZC3H13Q5T200 1668 aaKnown RBP22.36■■□□□ 1.17
COL9A1-201ENST00000320755 NEXMIFQ5QGS0 1516 aa22.36■■□□□ 1.17
COL9A1-201ENST00000320755 FYB1O15117 783 aa22.35■■□□□ 1.17
COL9A1-201ENST00000320755 SEC24BO95487 1268 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 TERF2IPQ9NYB0 399 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 MLECQ14165 292 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.34■■□□□ 1.17
COL9A1-201ENST00000320755 MAPK8IP3Q9UPT6 1336 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 NEO1Q92859 1461 aa22.33■■□□□ 1.17
COL9A1-201ENST00000320755 EXOSC9Q06265 439 aaKnown RBP22.33■■□□□ 1.17
COL9A1-201ENST00000320755 FTSJ3Q8IY81 847 aaKnown RBP22.33■■□□□ 1.17
COL9A1-201ENST00000320755 CABP1Q9NZU7 370 aa22.33■■□□□ 1.17
COL9A1-201ENST00000320755 PUS7Q96PZ0 661 aaKnown RBP22.33■■□□□ 1.16
COL9A1-201ENST00000320755 DIP2CQ9Y2E4 1556 aa22.32■■□□□ 1.16
COL9A1-201ENST00000320755 CCDC27Q2M243 656 aa22.32■■□□□ 1.16
COL9A1-201ENST00000320755 CDK19Q9BWU1 502 aa22.32■■□□□ 1.16
COL9A1-201ENST00000320755 IQSEC2Q5JU85 1478 aa22.31■■□□□ 1.16
COL9A1-201ENST00000320755 TMPOP42166 694 aaKnown RBP22.31■■□□□ 1.16
COL9A1-201ENST00000320755 SMC4Q9NTJ3 1288 aa22.31■■□□□ 1.16
COL9A1-201ENST00000320755 ARHGEF28Q8N1W1 1705 aaKnown RBP22.31■■□□□ 1.16
COL9A1-201ENST00000320755 PMFBP1Q8TBY8 1022 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 NSD2O96028 1365 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 NINLQ9Y2I6 1382 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 NFKBIBQ15653 356 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 WAPLQ7Z5K2 1190 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 USP35Q9P2H5 1018 aa22.29■■□□□ 1.16
COL9A1-201ENST00000320755 RIPK4P57078 832 aa22.29■■□□□ 1.16
COL9A1-201ENST00000320755 HDGFL2Q7Z4V5 671 aaPredicted RBP22.29■■□□□ 1.16
COL9A1-201ENST00000320755 PDZRN3Q9UPQ7 1066 aa22.29■■□□□ 1.16
COL9A1-201ENST00000320755 FAM69CQ0P6D2 419 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 ZKSCAN2Q63HK3 967 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 ABCC11Q96J66 1382 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 PIK3C2BO00750 1634 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 TRIM35Q9UPQ4 493 aa22.27■■□□□ 1.16
COL9A1-201ENST00000320755 DZIP1LQ8IYY4 767 aaKnown RBP22.27■■□□□ 1.15
COL9A1-201ENST00000320755 PLEKHF1Q96S99 279 aa22.27■■□□□ 1.15
COL9A1-201ENST00000320755 DIAPH1O60610 1272 aaKnown RBP22.26■■□□□ 1.15
COL9A1-201ENST00000320755 RWDD1Q9H446 243 aaPredicted RBP22.26■■□□□ 1.15
COL9A1-201ENST00000320755 YTHDC2Q9H6S0 1430 aaKnown RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms