RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ORAI2Q96SN7 254 aa28.75■■■□□ 2.19
LIME1-201ENST00000309546 LRRC59Q96AG4 307 aaKnown RBP28.74■■■□□ 2.19
LIME1-201ENST00000309546 NRXN1Q9ULB1 1477 aa28.73■■■□□ 2.19
LIME1-201ENST00000309546 WAPLQ7Z5K2 1190 aa28.73■■■□□ 2.19
LIME1-201ENST00000309546 YTHDC2Q9H6S0 1430 aaKnown RBP28.73■■■□□ 2.19
LIME1-201ENST00000309546 ABCC11Q96J66 1382 aa28.72■■■□□ 2.19
LIME1-201ENST00000309546 PLEKHH1Q9ULM0 1364 aa28.71■■■□□ 2.19
LIME1-201ENST00000309546 PNPLA6Q8IY17 1366 aa28.69■■■□□ 2.18
LIME1-201ENST00000309546 CFAP70Q5T0N1 1121 aa28.68■■■□□ 2.18
LIME1-201ENST00000309546 C14orf93Q9H972 538 aaKnown RBP28.68■■■□□ 2.18
LIME1-201ENST00000309546 NUTM2FA1L443 756 aa28.66■■■□□ 2.18
LIME1-201ENST00000309546 HRCP23327 699 aa28.65■■■□□ 2.18
LIME1-201ENST00000309546 ESCO1Q5FWF5 840 aa28.65■■■□□ 2.18
LIME1-201ENST00000309546 DHX57Q6P158 1386 aaKnown RBP28.64■■■□□ 2.18
LIME1-201ENST00000309546 FMN2Q9NZ56 1722 aa28.64■■■□□ 2.18
LIME1-201ENST00000309546 ZNF772Q68DY9 489 aaPredicted RBP28.64■■■□□ 2.18
LIME1-201ENST00000309546 SOS2Q07890 1332 aaPredicted RBP28.63■■■□□ 2.17
LIME1-201ENST00000309546 KDM2AQ9Y2K7 1162 aa28.6■■■□□ 2.17
LIME1-201ENST00000309546 DCAF11Q8TEB1 546 aa28.58■■■□□ 2.17
LIME1-201ENST00000309546 C8orf37Q96NL8 207 aa28.58■■■□□ 2.17
LIME1-201ENST00000309546 AFF2P51816 1311 aa28.58■■■□□ 2.17
LIME1-201ENST00000309546 NPHP3Q7Z494 1330 aa28.58■■■□□ 2.17
LIME1-201ENST00000309546 SAFB2Q14151 953 aaKnown RBP eCLIP28.57■■■□□ 2.16
LIME1-201ENST00000309546 XPCQ01831 940 aaPredicted RBP28.56■■■□□ 2.16
LIME1-201ENST00000309546 SIRT1Q96EB6 747 aa28.56■■■□□ 2.16
LIME1-201ENST00000309546 RGPD8O14715 1765 aaPredicted RBP28.55■■■□□ 2.16
LIME1-201ENST00000309546 ADGRB1O14514 1584 aa28.55■■■□□ 2.16
LIME1-201ENST00000309546 FOXO3O43524 673 aa28.55■■■□□ 2.16
LIME1-201ENST00000309546 PRAM1Q96QH2 718 aa28.55■■■□□ 2.16
LIME1-201ENST00000309546 KIF1AQ12756 1690 aa28.54■■■□□ 2.16
LIME1-201ENST00000309546 DLC1Q96QB1 1528 aa28.54■■■□□ 2.16
LIME1-201ENST00000309546 PXDNQ92626 1479 aa28.54■■■□□ 2.16
LIME1-201ENST00000309546 ADAMTS2O95450 1211 aa28.54■■■□□ 2.16
LIME1-201ENST00000309546 COL22A1Q8NFW1 1626 aaPredicted RBP28.54■■■□□ 2.16
LIME1-201ENST00000309546 POGKQ9P215 609 aa28.52■■■□□ 2.16
LIME1-201ENST00000309546 TRAK1Q9UPV9 953 aa28.49■■■□□ 2.15
LIME1-201ENST00000309546 RXRBP28702 533 aa28.48■■■□□ 2.15
LIME1-201ENST00000309546 NGLY1Q96IV0 654 aa28.47■■■□□ 2.15
LIME1-201ENST00000309546 ADGRB2O60241 1585 aa28.45■■■□□ 2.15
LIME1-201ENST00000309546 STAC3Q96MF2 364 aa28.45■■■□□ 2.14
LIME1-201ENST00000309546 MARF1Q9Y4F3 1742 aaKnown RBP28.43■■■□□ 2.14
LIME1-201ENST00000309546 PHF8Q9UPP1 1060 aa28.42■■■□□ 2.14
LIME1-201ENST00000309546 USP32Q8NFA0 1604 aa28.42■■■□□ 2.14
LIME1-201ENST00000309546 HIRIP3Q9BW71 556 aaPredicted RBP28.41■■■□□ 2.14
LIME1-201ENST00000309546 QTRT2Q9H974 415 aaKnown RBP28.41■■■□□ 2.14
LIME1-201ENST00000309546 MINK1Q8N4C8 1332 aaPredicted RBP28.41■■■□□ 2.14
LIME1-201ENST00000309546 ARHGEF28Q8N1W1 1705 aaKnown RBP28.4■■■□□ 2.14
LIME1-201ENST00000309546 CDK12Q9NYV4 1490 aaPredicted RBP28.4■■■□□ 2.14
LIME1-201ENST00000309546 KRT28Q7Z3Y7 464 aa28.39■■■□□ 2.14
LIME1-201ENST00000309546 ANKARQ7Z5J8 1434 aa28.38■■■□□ 2.13
LIME1-201ENST00000309546 USP21Q9UK80 565 aa28.38■■■□□ 2.13
LIME1-201ENST00000309546 SPATA31A3Q5VYP0 1347 aa28.37■■■□□ 2.13
LIME1-201ENST00000309546 RBM6P78332 1123 aaKnown RBP28.36■■■□□ 2.13
LIME1-201ENST00000309546 RGS12O14924 1447 aa28.35■■■□□ 2.13
LIME1-201ENST00000309546 PMFBP1Q8TBY8 1022 aa28.34■■■□□ 2.13
LIME1-201ENST00000309546 KIAA1210Q9ULL0 1709 aa28.34■■■□□ 2.13
LIME1-201ENST00000309546 TNS3Q68CZ2 1445 aa28.34■■■□□ 2.13
LIME1-201ENST00000309546 TULP4Q9NRJ4 1543 aa28.33■■■□□ 2.13
LIME1-201ENST00000309546 PSME1Q06323 249 aa28.33■■■□□ 2.13
LIME1-201ENST00000309546 EIF3AQ14152 1382 aaKnown RBP28.33■■■□□ 2.13
LIME1-201ENST00000309546 PLEKHG5O94827 1062 aa28.31■■■□□ 2.12
LIME1-201ENST00000309546 FNBP4Q8N3X1 1017 aaPredicted RBP28.31■■■□□ 2.12
LIME1-201ENST00000309546 TRPC5Q9UL62 973 aaPredicted RBP28.31■■■□□ 2.12
LIME1-201ENST00000309546 WASLO00401 505 aaPredicted RBP28.29■■■□□ 2.12
LIME1-201ENST00000309546 LMOD2Q6P5Q4 547 aa28.29■■■□□ 2.12
LIME1-201ENST00000309546 SBNO1A3KN83 1393 aa28.28■■■□□ 2.12
LIME1-201ENST00000309546 PRR36Q9H6K5 1346 aa28.28■■■□□ 2.12
LIME1-201ENST00000309546 HAP1P54257 671 aaPredicted RBP28.28■■■□□ 2.12
LIME1-201ENST00000309546 ABCA3Q99758 1704 aa28.27■■■□□ 2.12
LIME1-201ENST00000309546 ATRNO75882 1429 aa28.26■■■□□ 2.12
LIME1-201ENST00000309546 UPF1Q92900 1129 aaKnown RBP eCLIP28.26■■■□□ 2.111e-14■□□□□ 10.4
LIME1-201ENST00000309546 ITSN1Q15811 1721 aa28.26■■■□□ 2.11
LIME1-201ENST00000309546 TRPM3Q9HCF6 1732 aaPredicted RBP28.25■■■□□ 2.11
LIME1-201ENST00000309546 ARHGEF10O15013 1369 aa28.24■■■□□ 2.11
LIME1-201ENST00000309546 BCL9LQ86UU0 1499 aa28.24■■■□□ 2.11
LIME1-201ENST00000309546 CABLES1Q8TDN4 633 aa28.24■■■□□ 2.11
LIME1-201ENST00000309546 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.23■■■□□ 2.11
LIME1-201ENST00000309546 GPRASP1Q5JY77 1395 aa28.23■■■□□ 2.11
LIME1-201ENST00000309546 NBPF1Q3BBV0 1214 aa28.21■■■□□ 2.11
LIME1-201ENST00000309546 ATP7BP35670 1465 aa28.21■■■□□ 2.11
LIME1-201ENST00000309546 PLCH1Q4KWH8 1693 aa28.19■■■□□ 2.1
LIME1-201ENST00000309546 NGDNQ8NEJ9 315 aaKnown RBP28.19■■■□□ 2.1
LIME1-201ENST00000309546 ALS2Q96Q42 1657 aa28.19■■■□□ 2.1
LIME1-201ENST00000309546 SLIT2O94813 1529 aa28.18■■■□□ 2.1
LIME1-201ENST00000309546 SIN3AQ96ST3 1273 aa28.18■■■□□ 2.1
LIME1-201ENST00000309546 L3MBTL2Q969R5 705 aa28.16■■■□□ 2.1
LIME1-201ENST00000309546 NUDT16Q96DE0 195 aaKnown RBP28.16■■■□□ 2.1
LIME1-201ENST00000309546 NEUROD1Q13562 356 aa28.15■■■□□ 2.1
LIME1-201ENST00000309546 UNC5CLQ8IV45 518 aa28.15■■■□□ 2.1
LIME1-201ENST00000309546 CDK19Q9BWU1 502 aa28.15■■■□□ 2.1
LIME1-201ENST00000309546 TOPAZ1Q8N9V7 1692 aa28.15■■■□□ 2.1
LIME1-201ENST00000309546 GJD4Q96KN9 370 aaPredicted RBP28.14■■■□□ 2.1
LIME1-201ENST00000309546 NWD2Q9ULI1 1742 aa28.13■■■□□ 2.09
LIME1-201ENST00000309546 PAK3O75914 559 aaPredicted RBP28.13■■■□□ 2.09
LIME1-201ENST00000309546 QRICH2Q9H0J4 1663 aa28.13■■■□□ 2.09
LIME1-201ENST00000309546 GLI3P10071 1580 aa28.11■■■□□ 2.09
LIME1-201ENST00000309546 ATAD2Q6PL18 1390 aa28.11■■■□□ 2.09
LIME1-201ENST00000309546 TRPM1Q7Z4N2 1603 aa28.1■■■□□ 2.09
LIME1-201ENST00000309546 RALGAPBQ86X10 1494 aa28.1■■■□□ 2.09
LIME1-201ENST00000309546 CENPJQ9HC77 1338 aaPredicted RBP28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms