RNA–Protein interactions for RNA: ENST00000305366.7

TM4SF1-201, Transcript of transmembrane 4 L six family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM4SF1, Length 1,771 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-201ENST00000305366 ESCO1Q5FWF5 840 aa11.21□□□□□ -0.61
TM4SF1-201ENST00000305366 COL16A1Q07092 1604 aaPredicted RBP11.21□□□□□ -0.61
TM4SF1-201ENST00000305366 XPCQ01831 940 aaPredicted RBP11.21□□□□□ -0.62
TM4SF1-201ENST00000305366 TMEM132EQ6IEE7 984 aa11.21□□□□□ -0.62
TM4SF1-201ENST00000305366 WAPLQ7Z5K2 1190 aa11.21□□□□□ -0.62
TM4SF1-201ENST00000305366 UPF1Q92900 1129 aaKnown RBP eCLIP11.21□□□□□ -0.623e-10■■□□□ 13.9
TM4SF1-201ENST00000305366 RPGRIP1LQ68CZ1 1315 aa11.2□□□□□ -0.62
TM4SF1-201ENST00000305366 ADGRF5Q8IZF2 1346 aa11.2□□□□□ -0.62
TM4SF1-201ENST00000305366 PLEKHG5O94827 1062 aa11.2□□□□□ -0.62
TM4SF1-201ENST00000305366 MPHOSPH9Q99550 1183 aa11.2□□□□□ -0.62
TM4SF1-201ENST00000305366 RAB3GAP2Q9H2M9 1393 aa11.2□□□□□ -0.62
TM4SF1-201ENST00000305366 SETD5Q9C0A6 1442 aa11.2□□□□□ -0.62
TM4SF1-201ENST00000305366 ASXL1Q8IXJ9 1541 aa11.19□□□□□ -0.62
TM4SF1-201ENST00000305366 DCCP43146 1447 aa11.19□□□□□ -0.62
TM4SF1-201ENST00000305366 ADGRL3Q9HAR2 1447 aa11.19□□□□□ -0.62
TM4SF1-201ENST00000305366 SETBP1Q9Y6X0 1596 aa11.19□□□□□ -0.62
TM4SF1-201ENST00000305366 CLTCL1P53675 1640 aa11.19□□□□□ -0.62
TM4SF1-201ENST00000305366 KCNA4P22459 653 aa11.18□□□□□ -0.62
TM4SF1-201ENST00000305366 HFM1A2PYH4 1435 aa11.18□□□□□ -0.62
TM4SF1-201ENST00000305366 FOXO3O43524 673 aa11.18□□□□□ -0.62
TM4SF1-201ENST00000305366 C1orf167Q5SNV9 1468 aa11.18□□□□□ -0.62
TM4SF1-201ENST00000305366 NEXMIFQ5QGS0 1516 aa11.18□□□□□ -0.62
TM4SF1-201ENST00000305366 AHDC1Q5TGY3 1603 aaPredicted RBP11.18□□□□□ -0.62
TM4SF1-201ENST00000305366 NRXN3Q9Y4C0 1643 aa11.18□□□□□ -0.62
TM4SF1-201ENST00000305366 PNPLA6Q8IY17 1366 aa11.17□□□□□ -0.62
TM4SF1-201ENST00000305366 MIER1Q8N108 512 aa11.17□□□□□ -0.62
TM4SF1-201ENST00000305366 SPHKAPQ2M3C7 1700 aa11.16□□□□□ -0.62
TM4SF1-201ENST00000305366 RBM6P78332 1123 aaKnown RBP11.16□□□□□ -0.62
TM4SF1-201ENST00000305366 USP21Q9UK80 565 aa11.16□□□□□ -0.62
TM4SF1-201ENST00000305366 SAFB2Q14151 953 aaKnown RBP eCLIP11.15□□□□□ -0.62
TM4SF1-201ENST00000305366 CCDC144AA2RUR9 1427 aa11.14□□□□□ -0.63
TM4SF1-201ENST00000305366 SOS2Q07890 1332 aaPredicted RBP11.14□□□□□ -0.63
TM4SF1-201ENST00000305366 XRN1Q8IZH2 1706 aaKnown RBP11.14□□□□□ -0.63
TM4SF1-201ENST00000305366 C1QBPQ07021 282 aaKnown RBP11.13□□□□□ -0.63
TM4SF1-201ENST00000305366 SETD1AO15047 1707 aaKnown RBP11.13□□□□□ -0.63
TM4SF1-201ENST00000305366 GTF3C3Q9Y5Q9 886 aa11.13□□□□□ -0.63
TM4SF1-201ENST00000305366 CFAP70Q5T0N1 1121 aa11.12□□□□□ -0.63
TM4SF1-201ENST00000305366 PTCH1Q13635 1447 aa11.12□□□□□ -0.63
TM4SF1-201ENST00000305366 PLEKHH1Q9ULM0 1364 aa11.12□□□□□ -0.63
TM4SF1-201ENST00000305366 NPHP3Q7Z494 1330 aa11.11□□□□□ -0.63
TM4SF1-201ENST00000305366 LMOD2Q6P5Q4 547 aa11.11□□□□□ -0.63
TM4SF1-201ENST00000305366 TRPC5Q9UL62 973 aaPredicted RBP11.11□□□□□ -0.63
TM4SF1-201ENST00000305366 TIMELESSQ9UNS1 1208 aa11.11□□□□□ -0.63
TM4SF1-201ENST00000305366 KDM2AQ9Y2K7 1162 aa11.11□□□□□ -0.63
TM4SF1-201ENST00000305366 SHPRHQ149N8 1683 aa11.1□□□□□ -0.63
TM4SF1-201ENST00000305366 HAP1P54257 671 aaPredicted RBP11.1□□□□□ -0.63
TM4SF1-201ENST00000305366 KRT28Q7Z3Y7 464 aa11.09□□□□□ -0.63
TM4SF1-201ENST00000305366 LRPPRCP42704 1394 aaKnown RBP11.09□□□□□ -0.63
TM4SF1-201ENST00000305366 ANKRD30BQ9BXX2 1392 aa11.09□□□□□ -0.63
TM4SF1-201ENST00000305366 RGS12O14924 1447 aa11.09□□□□□ -0.63
TM4SF1-201ENST00000305366 FNBP4Q8N3X1 1017 aaPredicted RBP11.08□□□□□ -0.64
TM4SF1-201ENST00000305366 POGKQ9P215 609 aa11.08□□□□□ -0.64
TM4SF1-201ENST00000305366 CABLES1Q8TDN4 633 aa11.08□□□□□ -0.64
TM4SF1-201ENST00000305366 PRAM1Q96QH2 718 aa11.08□□□□□ -0.64
TM4SF1-201ENST00000305366 C14orf93Q9H972 538 aaKnown RBP11.08□□□□□ -0.64
TM4SF1-201ENST00000305366 NALCNQ8IZF0 1738 aa11.08□□□□□ -0.64
TM4SF1-201ENST00000305366 SPATA31E1Q6ZUB1 1445 aa11.07□□□□□ -0.64
TM4SF1-201ENST00000305366 KIF1BO60333 1816 aa11.07□□□□□ -0.64
TM4SF1-201ENST00000305366 ABCC11Q96J66 1382 aa11.07□□□□□ -0.64
TM4SF1-201ENST00000305366 PSME1Q06323 249 aa11.06□□□□□ -0.64
TM4SF1-201ENST00000305366 PMFBP1Q8TBY8 1022 aa11.06□□□□□ -0.64
TM4SF1-201ENST00000305366 HIRIP3Q9BW71 556 aaPredicted RBP11.06□□□□□ -0.64
TM4SF1-201ENST00000305366 PHF8Q9UPP1 1060 aa11.06□□□□□ -0.64
TM4SF1-201ENST00000305366 TRAK1Q9UPV9 953 aa11.05□□□□□ -0.64
TM4SF1-201ENST00000305366 CCDC9Q9Y3X0 531 aaKnown RBP11.05□□□□□ -0.64
TM4SF1-201ENST00000305366 YTHDC2Q9H6S0 1430 aaKnown RBP11.05□□□□□ -0.64
TM4SF1-201ENST00000305366 NHSL1Q5SYE7 1610 aa11.05□□□□□ -0.64
TM4SF1-201ENST00000305366 GJD4Q96KN9 370 aaPredicted RBP11.05□□□□□ -0.64
TM4SF1-201ENST00000305366 CDK12Q9NYV4 1490 aaPredicted RBP11.05□□□□□ -0.64
TM4SF1-201ENST00000305366 DCAF11Q8TEB1 546 aa11.04□□□□□ -0.64
TM4SF1-201ENST00000305366 SPATA31A3Q5VYP0 1347 aa11.04□□□□□ -0.64
TM4SF1-201ENST00000305366 YTHDC1Q96MU7 727 aaKnown RBP11.03□□□□□ -0.64
TM4SF1-201ENST00000305366 MINK1Q8N4C8 1332 aaPredicted RBP11.03□□□□□ -0.64
TM4SF1-201ENST00000305366 ATAD2Q6PL18 1390 aa11.03□□□□□ -0.64
TM4SF1-201ENST00000305366 UNC5CLQ8IV45 518 aa11.03□□□□□ -0.64
TM4SF1-201ENST00000305366 PIK3C2GO75747 1445 aa11.02□□□□□ -0.64
TM4SF1-201ENST00000305366 SIRT1Q96EB6 747 aa11.02□□□□□ -0.65
TM4SF1-201ENST00000305366 PRAG1Q86YV5 1406 aa11.02□□□□□ -0.65
TM4SF1-201ENST00000305366 PXDNQ92626 1479 aa11.02□□□□□ -0.65
TM4SF1-201ENST00000305366 A0A0G2JS52 829 aa11.01□□□□□ -0.65
TM4SF1-201ENST00000305366 ATRNO75882 1429 aa11.01□□□□□ -0.65
TM4SF1-201ENST00000305366 BCL9LQ86UU0 1499 aa11.01□□□□□ -0.65
TM4SF1-201ENST00000305366 HOMEZQ8IX15 550 aa11□□□□□ -0.65
TM4SF1-201ENST00000305366 TECPR2O15040 1411 aa11□□□□□ -0.65
TM4SF1-201ENST00000305366 MYOM2P54296 1465 aa11□□□□□ -0.65
TM4SF1-201ENST00000305366 PPLO60437 1756 aa11□□□□□ -0.65
TM4SF1-201ENST00000305366 PAK3O75914 559 aaPredicted RBP11□□□□□ -0.65
TM4SF1-201ENST00000305366 FAM83GA6ND36 823 aa10.99□□□□□ -0.65
TM4SF1-201ENST00000305366 CDC42BPGQ6DT37 1551 aa10.99□□□□□ -0.65
TM4SF1-201ENST00000305366 SEPT12Q8IYM1 358 aa10.99□□□□□ -0.65
TM4SF1-201ENST00000305366 ZRANB1Q9UGI0 708 aa10.99□□□□□ -0.65
TM4SF1-201ENST00000305366 NGDNQ8NEJ9 315 aaKnown RBP10.98□□□□□ -0.65
TM4SF1-201ENST00000305366 SIN3AQ96ST3 1273 aa10.98□□□□□ -0.65
TM4SF1-201ENST00000305366 DEFB132Q7Z7B7 95 aa10.96□□□□□ -0.65
TM4SF1-201ENST00000305366 WASLO00401 505 aaPredicted RBP10.95□□□□□ -0.66
TM4SF1-201ENST00000305366 SF3B2Q13435 895 aaKnown RBP10.95□□□□□ -0.66
TM4SF1-201ENST00000305366 VPS72Q15906 364 aa10.95□□□□□ -0.66
TM4SF1-201ENST00000305366 NUTM2GQ5VZR2 741 aa10.95□□□□□ -0.66
TM4SF1-201ENST00000305366 BTG4Q9NY30 223 aa10.95□□□□□ -0.66
TM4SF1-201ENST00000305366 PRR36Q9H6K5 1346 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms