RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 COL22A1Q8NFW1 1626 aaPredicted RBP31.12■■■□□ 2.57
SMCO4-201ENST00000298966 HFM1A2PYH4 1435 aa31.08■■■□□ 2.57
SMCO4-201ENST00000298966 PRAG1Q86YV5 1406 aa31.08■■■□□ 2.57
SMCO4-201ENST00000298966 SRCAPQ6ZRS2 3230 aa31.08■■■□□ 2.57
SMCO4-201ENST00000298966 NPHP3Q7Z494 1330 aa31.05■■■□□ 2.56
SMCO4-201ENST00000298966 MYOM2P54296 1465 aa31.04■■■□□ 2.56
SMCO4-201ENST00000298966 CCDC125Q86Z20 511 aa31.04■■■□□ 2.56
SMCO4-201ENST00000298966 RPGRIP1LQ68CZ1 1315 aa31.03■■■□□ 2.56
SMCO4-201ENST00000298966 MARF1Q9Y4F3 1742 aaKnown RBP31.02■■■□□ 2.56
SMCO4-201ENST00000298966 ESCO1Q5FWF5 840 aa31.02■■■□□ 2.56
SMCO4-201ENST00000298966 CDC42BPGQ6DT37 1551 aa31■■■□□ 2.55
SMCO4-201ENST00000298966 BCL9LQ86UU0 1499 aa30.99■■■□□ 2.55
SMCO4-201ENST00000298966 PPLO60437 1756 aa30.97■■■□□ 2.55
SMCO4-201ENST00000298966 PXDNQ92626 1479 aa30.97■■■□□ 2.55
SMCO4-201ENST00000298966 GJD4Q96KN9 370 aaPredicted RBP30.96■■■□□ 2.55
SMCO4-201ENST00000298966 EP400Q96L91 3159 aa30.95■■■□□ 2.55
SMCO4-201ENST00000298966 LRPPRCP42704 1394 aaKnown RBP30.94■■■□□ 2.54
SMCO4-201ENST00000298966 FOXO3O43524 673 aa30.94■■■□□ 2.54
SMCO4-201ENST00000298966 XPCQ01831 940 aaPredicted RBP30.94■■■□□ 2.54
SMCO4-201ENST00000298966 NAIPQ13075 1403 aa30.94■■■□□ 2.54
SMCO4-201ENST00000298966 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.91■■■□□ 2.54
SMCO4-201ENST00000298966 HRCP23327 699 aa30.9■■■□□ 2.54
SMCO4-201ENST00000298966 ACIN1Q9UKV3 1341 aaKnown RBP30.87■■■□□ 2.53
SMCO4-201ENST00000298966 NUTM2FA1L443 756 aa30.86■■■□□ 2.53
SMCO4-201ENST00000298966 UNC5CLQ8IV45 518 aa30.86■■■□□ 2.53
SMCO4-201ENST00000298966 SLC4A1APQ9BWU0 796 aaKnown RBP30.86■■■□□ 2.53
SMCO4-201ENST00000298966 BLMP54132 1417 aaPredicted RBP30.84■■■□□ 2.53
SMCO4-201ENST00000298966 STK26Q9P289 416 aa30.84■■■□□ 2.53
SMCO4-201ENST00000298966 GLI3P10071 1580 aa30.83■■■□□ 2.53
SMCO4-201ENST00000298966 RALGAPBQ86X10 1494 aa30.83■■■□□ 2.53
SMCO4-201ENST00000298966 WAPLQ7Z5K2 1190 aa30.82■■■□□ 2.52
SMCO4-201ENST00000298966 SLIT2O94813 1529 aa30.82■■■□□ 2.52
SMCO4-201ENST00000298966 TECPR2O15040 1411 aa30.81■■■□□ 2.52
SMCO4-201ENST00000298966 SPATA31A3Q5VYP0 1347 aa30.8■■■□□ 2.52
SMCO4-201ENST00000298966 ADGRF5Q8IZF2 1346 aa30.79■■■□□ 2.52
SMCO4-201ENST00000298966 KIF1AQ12756 1690 aa30.79■■■□□ 2.52
SMCO4-201ENST00000298966 CCDC144AA2RUR9 1427 aa30.78■■■□□ 2.52
SMCO4-201ENST00000298966 BRWD3Q6RI45 1802 aa30.77■■■□□ 2.52
SMCO4-201ENST00000298966 SF3B2Q13435 895 aaKnown RBP30.77■■■□□ 2.52
SMCO4-201ENST00000298966 FMN2Q9NZ56 1722 aa30.77■■■□□ 2.52
SMCO4-201ENST00000298966 RAB3GAP2Q9H2M9 1393 aa30.77■■■□□ 2.52
SMCO4-201ENST00000298966 USP32Q8NFA0 1604 aa30.76■■■□□ 2.52
SMCO4-201ENST00000298966 KNDC1Q76NI1 1749 aa30.76■■■□□ 2.52
SMCO4-201ENST00000298966 ABCC11Q96J66 1382 aa30.76■■■□□ 2.51
SMCO4-201ENST00000298966 HAP1P54257 671 aaPredicted RBP30.75■■■□□ 2.51
SMCO4-201ENST00000298966 KRT28Q7Z3Y7 464 aa30.74■■■□□ 2.51
SMCO4-201ENST00000298966 DEFB132Q7Z7B7 95 aa30.74■■■□□ 2.51
SMCO4-201ENST00000298966 PLEKHH1Q9ULM0 1364 aa30.73■■■□□ 2.51
SMCO4-201ENST00000298966 ANKRD30BQ9BXX2 1392 aa30.72■■■□□ 2.51
SMCO4-201ENST00000298966 RGL3Q3MIN7 710 aa30.72■■■□□ 2.51
SMCO4-201ENST00000298966 SEPT12Q8IYM1 358 aa30.72■■■□□ 2.51
SMCO4-201ENST00000298966 TMEM132EQ6IEE7 984 aa30.71■■■□□ 2.51
SMCO4-201ENST00000298966 IFT172Q9UG01 1749 aa30.7■■■□□ 2.5
SMCO4-201ENST00000298966 VPS72Q15906 364 aa30.69■■■□□ 2.5
SMCO4-201ENST00000298966 PSME1Q06323 249 aa30.68■■■□□ 2.5
SMCO4-201ENST00000298966 CCDC9Q9Y3X0 531 aaKnown RBP30.68■■■□□ 2.5
SMCO4-201ENST00000298966 TNS3Q68CZ2 1445 aa30.67■■■□□ 2.5
SMCO4-201ENST00000298966 ZEB1P37275 1124 aaPredicted RBP30.67■■■□□ 2.5
SMCO4-201ENST00000298966 CCER1Q8TC90 406 aaPredicted RBP30.66■■■□□ 2.5
SMCO4-201ENST00000298966 NWD2Q9ULI1 1742 aa30.66■■■□□ 2.5
SMCO4-201ENST00000298966 SPATA31E1Q6ZUB1 1445 aa30.65■■■□□ 2.5
SMCO4-201ENST00000298966 YTHDC2Q9H6S0 1430 aaKnown RBP30.65■■■□□ 2.5
SMCO4-201ENST00000298966 PLCH1Q4KWH8 1693 aa30.65■■■□□ 2.5
SMCO4-201ENST00000298966 RGPD8O14715 1765 aaPredicted RBP30.65■■■□□ 2.5
SMCO4-201ENST00000298966 PHF8Q9UPP1 1060 aa30.65■■■□□ 2.5
SMCO4-201ENST00000298966 CABLES1Q8TDN4 633 aa30.64■■■□□ 2.5
SMCO4-201ENST00000298966 CLSPNQ9HAW4 1339 aa30.64■■■□□ 2.5
SMCO4-201ENST00000298966 PIK3C2GO75747 1445 aa30.64■■■□□ 2.49
SMCO4-201ENST00000298966 PLEKHG5O94827 1062 aa30.63■■■□□ 2.49
SMCO4-201ENST00000298966 KRT27Q7Z3Y8 459 aa30.63■■■□□ 2.49
SMCO4-201ENST00000298966 LRP5O75197 1615 aa30.62■■■□□ 2.49
SMCO4-201ENST00000298966 ONECUT3O60422 494 aaPredicted RBP30.62■■■□□ 2.49
SMCO4-201ENST00000298966 SIRT1Q96EB6 747 aa30.62■■■□□ 2.49
SMCO4-201ENST00000298966 SBNO1A3KN83 1393 aa30.6■■■□□ 2.49
SMCO4-201ENST00000298966 LMOD2Q6P5Q4 547 aa30.6■■■□□ 2.49
SMCO4-201ENST00000298966 ABCA3Q99758 1704 aa30.59■■■□□ 2.49
SMCO4-201ENST00000298966 ARHGEF10O15013 1369 aa30.58■■■□□ 2.49
SMCO4-201ENST00000298966 DHX57Q6P158 1386 aaKnown RBP30.57■■■□□ 2.48
SMCO4-201ENST00000298966 A0A0G2JS52 829 aa30.57■■■□□ 2.48
SMCO4-201ENST00000298966 BAG6P46379 1132 aa30.57■■■□□ 2.48
SMCO4-201ENST00000298966 MYT1Q01538 1121 aa30.57■■■□□ 2.48
SMCO4-201ENST00000298966 NRXN1Q9ULB1 1477 aa30.56■■■□□ 2.48
SMCO4-201ENST00000298966 C14orf93Q9H972 538 aaKnown RBP30.52■■■□□ 2.48
SMCO4-201ENST00000298966 PSDA5PKW4 1024 aaPredicted RBP30.51■■■□□ 2.47
SMCO4-201ENST00000298966 FAM83GA6ND36 823 aa30.51■■■□□ 2.47
SMCO4-201ENST00000298966 MPHOSPH9Q99550 1183 aa30.51■■■□□ 2.47
SMCO4-201ENST00000298966 SAFB2Q14151 953 aaKnown RBP eCLIP30.48■■■□□ 2.47
SMCO4-201ENST00000298966 FAM98CQ17RN3 349 aaKnown RBP30.48■■■□□ 2.47
SMCO4-201ENST00000298966 NRAPQ86VF7 1730 aa30.47■■■□□ 2.47
SMCO4-201ENST00000298966 PMFBP1Q8TBY8 1022 aa30.47■■■□□ 2.47
SMCO4-201ENST00000298966 PRAM1Q96QH2 718 aa30.47■■■□□ 2.47
SMCO4-201ENST00000298966 ANKARQ7Z5J8 1434 aa30.46■■■□□ 2.47
SMCO4-201ENST00000298966 CFAP70Q5T0N1 1121 aa30.45■■■□□ 2.47
SMCO4-201ENST00000298966 BTG4Q9NY30 223 aa30.45■■■□□ 2.47
SMCO4-201ENST00000298966 POGKQ9P215 609 aa30.44■■■□□ 2.46
SMCO4-201ENST00000298966 RGPD1P0DJD0 1748 aa30.44■■■□□ 2.46
SMCO4-201ENST00000298966 COL14A1Q05707 1796 aaKnown RBP30.43■■■□□ 2.46
SMCO4-201ENST00000298966 TRPM3Q9HCF6 1732 aaPredicted RBP30.4■■■□□ 2.46
SMCO4-201ENST00000298966 EN1Q05925 392 aaPredicted RBP30.4■■■□□ 2.46
SMCO4-201ENST00000298966 DLC1Q96QB1 1528 aa30.4■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms