RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 GGNBP2Q9H3C7 697 aa19.21■□□□□ 0.67
SHH-201ENST00000297261 KIAA2012Q0VF49 1180 aa19.21■□□□□ 0.67
SHH-201ENST00000297261 DDX11L8A8MPP1 907 aa19.21■□□□□ 0.67
SHH-201ENST00000297261 SMC4Q9NTJ3 1288 aa19.21■□□□□ 0.67
SHH-201ENST00000297261 NGDNQ8NEJ9 315 aaKnown RBP19.2■□□□□ 0.66
SHH-201ENST00000297261 SCAF11Q99590 1463 aaKnown RBP19.2■□□□□ 0.66
SHH-201ENST00000297261 DDX49Q9Y6V7 483 aaKnown RBP19.19■□□□□ 0.66
SHH-201ENST00000297261 PTMSP20962 102 aa19.19■□□□□ 0.66
SHH-201ENST00000297261 ZRSR1Q15695 479 aaKnown RBP19.18■□□□□ 0.66
SHH-201ENST00000297261 IPO8O15397 1037 aaKnown RBP19.18■□□□□ 0.66
SHH-201ENST00000297261 MAST1Q9Y2H9 1570 aa19.18■□□□□ 0.66
SHH-201ENST00000297261 UHRF1BP1Q6BDS2 1440 aa19.17■□□□□ 0.66
SHH-201ENST00000297261 TXNDC2Q86VQ3 553 aa19.17■□□□□ 0.66
SHH-201ENST00000297261 FAM13BQ9NYF5 915 aa19.16■□□□□ 0.66
SHH-201ENST00000297261 ABCC1P33527 1531 aa19.16■□□□□ 0.66
SHH-201ENST00000297261 MTHFSP49914 203 aa19.15■□□□□ 0.66
SHH-201ENST00000297261 FOXD4L5Q5VV16 416 aaPredicted RBP19.15■□□□□ 0.66
SHH-201ENST00000297261 FOXD4L4Q8WXT5 416 aaPredicted RBP19.15■□□□□ 0.66
SHH-201ENST00000297261 C14orf93Q9H972 538 aaKnown RBP19.15■□□□□ 0.66
SHH-201ENST00000297261 DRC7Q8IY82 874 aa19.14■□□□□ 0.65
SHH-201ENST00000297261 GOLGA6L4A6NEF3 574 aa19.14■□□□□ 0.65
SHH-201ENST00000297261 COG3Q96JB2 828 aa19.14■□□□□ 0.65
SHH-201ENST00000297261 TESK2Q96S53 571 aa19.14■□□□□ 0.65
SHH-201ENST00000297261 CHMP5Q9NZZ3 219 aa19.14■□□□□ 0.65
SHH-201ENST00000297261 CLASP1Q7Z460 1538 aa19.13■□□□□ 0.65
SHH-201ENST00000297261 SKAP1Q86WV1 359 aa19.13■□□□□ 0.65
SHH-201ENST00000297261 PKNOX2Q96KN3 472 aa19.13■□□□□ 0.65
SHH-201ENST00000297261 FAM43AQ8N2R8 423 aa19.13■□□□□ 0.65
SHH-201ENST00000297261 CDK19Q9BWU1 502 aa19.12■□□□□ 0.65
SHH-201ENST00000297261 POGZQ7Z3K3 1410 aa19.12■□□□□ 0.65
SHH-201ENST00000297261 CABP1Q9NZU7 370 aa19.11■□□□□ 0.65
SHH-201ENST00000297261 E9PSI1 815 aa19.1■□□□□ 0.65
SHH-201ENST00000297261 KCNJ4P48050 445 aa19.1■□□□□ 0.65
SHH-201ENST00000297261 NOL8Q76FK4 1167 aaKnown RBP19.1■□□□□ 0.65
SHH-201ENST00000297261 SLC26A8Q96RN1 970 aa19.09■□□□□ 0.65
SHH-201ENST00000297261 TAOK2Q9UL54 1235 aa19.09■□□□□ 0.65
SHH-201ENST00000297261 DIAPH1O60610 1272 aaKnown RBP19.09■□□□□ 0.65
SHH-201ENST00000297261 NSD3Q9BZ95 1437 aa19.08■□□□□ 0.65
SHH-201ENST00000297261 MCCP23508 829 aa19.08■□□□□ 0.64
SHH-201ENST00000297261 WAPLQ7Z5K2 1190 aa19.08■□□□□ 0.64
SHH-201ENST00000297261 CEBPAP49715 358 aaPredicted RBP19.07■□□□□ 0.64
SHH-201ENST00000297261 RUNDC1Q96C34 613 aa19.07■□□□□ 0.64
SHH-201ENST00000297261 HAP1P54257 671 aaPredicted RBP19.07■□□□□ 0.64
SHH-201ENST00000297261 PPP6R1Q9UPN7 881 aa19.07■□□□□ 0.64
SHH-201ENST00000297261 PANK1Q8TE04 598 aa19.06■□□□□ 0.64
SHH-201ENST00000297261 CDC42BPBQ9Y5S2 1711 aa19.06■□□□□ 0.64
SHH-201ENST00000297261 SPATA31E1Q6ZUB1 1445 aa19.06■□□□□ 0.64
SHH-201ENST00000297261 EIF2AK4Q9P2K8 1649 aaKnown RBP19.06■□□□□ 0.64
SHH-201ENST00000297261 FOXD4L6Q3SYB3 417 aaPredicted RBP19.06■□□□□ 0.64
SHH-201ENST00000297261 FOXD4L3Q6VB84 417 aaPredicted RBP19.06■□□□□ 0.64
SHH-201ENST00000297261 SKOR2Q2VWA4 1001 aaPredicted RBP19.05■□□□□ 0.64
SHH-201ENST00000297261 AMPHP49418 695 aa19.05■□□□□ 0.64
SHH-201ENST00000297261 SYAP1Q96A49 352 aaPredicted RBP19.05■□□□□ 0.64
SHH-201ENST00000297261 TRAK2O60296 914 aa19.04■□□□□ 0.64
SHH-201ENST00000297261 MRE11P49959 708 aa19.04■□□□□ 0.64
SHH-201ENST00000297261 NEO1Q92859 1461 aa19.04■□□□□ 0.64
SHH-201ENST00000297261 SMG6Q86US8 1419 aaKnown RBP19.04■□□□□ 0.64
SHH-201ENST00000297261 CFAP44Q96MT7 982 aa19.04■□□□□ 0.64
SHH-201ENST00000297261 SHROOM2Q13796 1616 aa19.04■□□□□ 0.64
SHH-201ENST00000297261 RTF1Q92541 710 aaKnown RBP19.04■□□□□ 0.64
SHH-201ENST00000297261 FGD1P98174 961 aa19.03■□□□□ 0.64
SHH-201ENST00000297261 THEMISQ8N1K5 641 aaPredicted RBP19.03■□□□□ 0.64
SHH-201ENST00000297261 OS9Q13438 667 aaPredicted RBP19.03■□□□□ 0.64
SHH-201ENST00000297261 ANKRD45Q5TZF3 282 aa19.03■□□□□ 0.64
SHH-201ENST00000297261 C22orf23Q9BZE7 217 aa19.02■□□□□ 0.64
SHH-201ENST00000297261 ATAD2Q6PL18 1390 aa19.02■□□□□ 0.64
SHH-201ENST00000297261 CROCC2H7BZ55 1655 aa19.02■□□□□ 0.64
SHH-201ENST00000297261 TCP11L2Q8N4U5 519 aa19.02■□□□□ 0.64
SHH-201ENST00000297261 NGEFQ8N5V2 710 aa19.02■□□□□ 0.63
SHH-201ENST00000297261 LTV1Q96GA3 475 aaPredicted RBP19.02■□□□□ 0.63
SHH-201ENST00000297261 ATP10AO60312 1499 aa19.01■□□□□ 0.63
SHH-201ENST00000297261 KDM5DQ9BY66 1539 aa19.01■□□□□ 0.63
SHH-201ENST00000297261 ZKSCAN2Q63HK3 967 aa19.01■□□□□ 0.63
SHH-201ENST00000297261 PLA2R1Q13018 1463 aa19■□□□□ 0.63
SHH-201ENST00000297261 CFAP65Q6ZU64 1925 aaKnown RBP19■□□□□ 0.63
SHH-201ENST00000297261 ZFYVE16Q7Z3T8 1539 aa19■□□□□ 0.63
SHH-201ENST00000297261 HMOX1P09601 288 aa18.99■□□□□ 0.63
SHH-201ENST00000297261 YEATS2Q9ULM3 1422 aa18.99■□□□□ 0.63
SHH-201ENST00000297261 ELL2O00472 640 aaPredicted RBP18.99■□□□□ 0.63
SHH-201ENST00000297261 NRDCO43847 1150 aa18.99■□□□□ 0.63
SHH-201ENST00000297261 RIPK4P57078 832 aa18.99■□□□□ 0.63
SHH-201ENST00000297261 NAP1L2Q9ULW6 460 aaPredicted RBP18.99■□□□□ 0.63
SHH-201ENST00000297261 GPRASP1Q5JY77 1395 aa18.99■□□□□ 0.63
SHH-201ENST00000297261 NPATQ14207 1427 aa18.98■□□□□ 0.63
SHH-201ENST00000297261 GOLGA6L6A8MZA4 724 aa18.98■□□□□ 0.63
SHH-201ENST00000297261 R3HCC1Q9Y3T6 440 aaKnown RBP18.98■□□□□ 0.63
SHH-201ENST00000297261 PLXNC1O60486 1568 aa18.98■□□□□ 0.63
SHH-201ENST00000297261 ST18O60284 1047 aa18.97■□□□□ 0.63
SHH-201ENST00000297261 COL17A1Q9UMD9 1497 aaPredicted RBP18.97■□□□□ 0.63
SHH-201ENST00000297261 PER1O15534 1290 aaPredicted RBP18.96■□□□□ 0.63
SHH-201ENST00000297261 LNPKQ9C0E8 428 aa18.95■□□□□ 0.62
SHH-201ENST00000297261 LMOD3Q0VAK6 560 aa18.95■□□□□ 0.62
SHH-201ENST00000297261 ARAP3Q8WWN8 1544 aa18.95■□□□□ 0.62
SHH-201ENST00000297261 PARD3Q8TEW0 1356 aa18.95■□□□□ 0.62
SHH-201ENST00000297261 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.95■□□□□ 0.62
SHH-201ENST00000297261 CFAP74Q9C0B2 1584 aa18.94■□□□□ 0.62
SHH-201ENST00000297261 RBM10P98175 930 aaKnown RBP18.94■□□□□ 0.62
SHH-201ENST00000297261 NASPP49321 788 aaPredicted RBP18.94■□□□□ 0.62
SHH-201ENST00000297261 NUDT16Q96DE0 195 aaKnown RBP18.93■□□□□ 0.62
SHH-201ENST00000297261 MLH3Q9UHC1 1453 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms